Wall clock time and date at job start Mon Mar 30 2020 03:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99687 * 2 1 4 4 C 1.50699 * 109.46867 * 293.95305 * 3 2 1 5 5 H 1.07998 * 120.00356 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00075 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99765 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00223 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47296 * 89.99727 * 8 6 4 10 10 H 1.48502 * 109.47038 * 209.99822 * 8 6 4 11 11 H 1.48506 * 109.47144 * 329.99667 * 8 6 4 12 12 C 1.40724 * 110.99859 * 123.94948 * 2 1 3 13 13 C 1.34595 * 126.52011 * 296.02135 * 12 2 1 14 14 N 1.37626 * 109.74243 * 180.02562 * 13 12 2 15 15 H 0.96996 * 125.08212 * 180.02562 * 14 13 12 16 16 C 1.37653 * 109.83643 * 0.02562 * 14 13 12 17 17 C 1.39173 * 133.38028 * 179.97438 * 16 14 13 18 18 C 1.37735 * 119.77895 * 179.97438 * 17 16 14 19 19 C 1.38854 * 120.65889 * 0.02841 * 18 17 16 20 20 C 1.36611 * 120.53015 * 359.96998 * 19 18 17 21 21 C 1.39613 * 119.77788 * 0.02562 * 20 19 18 22 22 H 1.09007 * 109.47002 * 296.04966 * 1 2 3 23 23 H 1.09004 * 109.47384 * 56.04827 * 1 2 3 24 24 H 1.08994 * 109.47149 * 176.04833 * 1 2 3 25 25 H 1.08994 * 109.47327 * 53.95021 * 3 2 1 26 26 H 1.09003 * 109.46895 * 173.95604 * 3 2 1 27 27 H 0.97002 * 120.00210 * 180.02562 * 7 6 4 28 28 H 1.07992 * 125.12885 * 359.97438 * 13 12 2 29 29 H 1.07996 * 120.11102 * 0.26478 * 17 16 14 30 30 H 1.07997 * 119.66872 * 179.97438 * 18 17 16 31 31 H 1.08002 * 119.73205 * 179.97438 * 19 18 17 32 32 H 1.07995 * 120.11197 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 -1.2985 5 1 1.0739 1.5114 -2.0485 6 6 2.0275 3.3491 -1.5290 7 7 2.7126 4.0016 -0.6155 8 14 1.5825 4.1869 -3.1382 9 1 0.2705 4.8678 -2.9955 10 1 2.6250 5.1876 -3.4801 11 1 1.4981 3.1711 -4.2182 12 6 1.9733 -0.7337 1.0898 13 6 1.8173 -0.4400 2.3940 14 7 2.4527 -1.3879 3.1633 15 1 2.4805 -1.3918 4.1329 16 6 3.0428 -2.3297 2.3511 17 6 3.7930 -3.4744 2.6034 18 6 4.2575 -4.2334 1.5521 19 6 3.9854 -3.8680 0.2404 20 6 3.2510 -2.7483 -0.0299 21 6 2.7701 -1.9642 1.0204 22 1 -0.3633 0.4513 0.9233 23 1 -0.3634 0.5740 -0.8525 24 1 -0.3633 -1.0252 -0.0708 25 1 1.5610 1.9274 0.8308 26 1 3.0797 1.3445 0.1082 27 1 2.9872 4.9178 -0.7775 28 1 1.2760 0.4116 2.7788 29 1 4.0063 -3.7692 3.6202 30 1 4.8398 -5.1212 1.7499 31 1 4.3574 -4.4739 -0.5725 32 1 3.0437 -2.4701 -1.0526 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258970231.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:57 Heat of formation + Delta-G solvation = 63.970494 kcal Electronic energy + Delta-G solvation = -15326.527294 eV Core-core repulsion = 12866.470492 eV Total energy + Delta-G solvation = -2460.056802 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.81950 -36.92494 -35.79186 -32.54973 -30.95410 -29.00100 -27.98924 -27.04733 -24.66268 -22.49281 -21.90551 -21.31326 -18.72775 -17.51989 -16.40413 -15.83315 -15.16513 -14.78478 -14.27753 -14.06205 -13.57684 -13.42911 -13.16795 -12.99016 -12.29453 -11.96073 -11.42891 -11.35144 -11.22277 -10.89875 -10.80740 -10.55199 -10.42477 -9.99645 -9.25919 -9.10162 -8.43403 -7.86242 -7.32925 -7.19232 -6.01220 -4.02695 1.47437 1.96033 3.09143 3.33175 3.39407 3.43372 3.45045 4.27545 4.44251 4.89480 5.06883 5.32599 5.34212 5.42375 5.48834 5.78059 5.88003 6.05050 6.14430 6.24077 6.30556 6.43541 6.74495 6.79435 6.92830 6.97854 7.08864 7.32121 7.41215 7.54126 7.81032 7.89512 8.17916 8.21452 8.71381 9.04758 9.61269 11.09583 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038262 B = 0.006321 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.615054 B = 4428.664627 C = 4664.578427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.482 5.482 3 C 0.200 3.800 4 C -0.508 4.508 5 H 0.065 0.935 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.898 3.102 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.039 3.961 13 C 0.004 3.996 14 N -0.598 5.598 15 H 0.410 0.590 16 C 0.099 3.901 17 C -0.142 4.142 18 C -0.102 4.102 19 C -0.163 4.163 20 C -0.048 4.048 21 C -0.091 4.091 22 H 0.012 0.988 23 H 0.078 0.922 24 H 0.046 0.954 25 H -0.008 1.008 26 H 0.031 0.969 27 H 0.261 0.739 28 H 0.164 0.836 29 H 0.113 0.887 30 H 0.118 0.882 31 H 0.117 0.883 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.171 -12.712 6.750 14.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 N -0.204 5.204 3 C 0.076 3.924 4 C -0.546 4.546 5 H 0.083 0.917 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.062 4.062 13 C -0.122 4.122 14 N -0.203 5.203 15 H 0.246 0.754 16 C -0.009 4.009 17 C -0.163 4.163 18 C -0.121 4.121 19 C -0.183 4.183 20 C -0.066 4.066 21 C -0.097 4.097 22 H 0.030 0.970 23 H 0.096 0.904 24 H 0.065 0.935 25 H 0.010 0.990 26 H 0.049 0.951 27 H 0.071 0.929 28 H 0.181 0.819 29 H 0.131 0.869 30 H 0.136 0.864 31 H 0.135 0.865 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 0.031 -12.687 6.442 14.229 hybrid contribution -0.387 1.124 0.472 1.279 sum -0.356 -11.563 6.913 13.477 Atomic orbital electron populations 1.22237 0.87624 0.99797 1.00573 1.59660 1.06795 1.17317 1.36605 1.19793 0.95579 0.80388 0.96608 1.21175 1.34815 0.96908 1.01749 0.91698 1.24985 0.95251 0.97336 0.97015 1.69966 1.38335 1.11410 1.34143 0.86489 0.77939 0.79224 0.83730 1.20754 1.21277 1.19697 1.19298 1.02453 0.95629 0.88805 1.22359 1.02525 0.95530 0.91836 1.41668 1.48154 1.22576 1.07872 0.75357 1.18234 0.99438 0.92958 0.90266 1.19900 1.02527 0.94815 0.99063 1.20702 0.99988 0.99085 0.92340 1.20576 1.02711 0.98630 0.96337 1.20399 0.94764 0.92793 0.98690 1.19138 1.02083 0.96550 0.91921 0.96953 0.90368 0.93529 0.99022 0.95103 0.92942 0.81909 0.86851 0.86388 0.86494 0.85597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.90 9.28 60.07 0.56 1.46 16 2 N -0.48 -10.98 4.87 -178.59 -0.87 -11.85 16 3 C 0.20 5.33 4.45 -4.98 -0.02 5.31 16 4 C -0.51 -14.36 8.46 -34.44 -0.29 -14.65 16 5 H 0.06 1.81 7.12 -52.49 -0.37 1.43 16 6 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -26.88 13.29 55.43 0.74 -26.14 16 8 Si 0.90 21.68 29.54 -169.99 -5.02 16.66 16 9 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 10 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.04 0.81 5.17 -81.62 -0.42 0.38 16 13 C 0.00 0.06 11.14 -16.24 -0.18 -0.12 16 14 N -0.60 -8.81 6.10 -10.38 -0.06 -8.88 16 15 H 0.41 4.44 8.96 -40.82 -0.37 4.07 16 16 C 0.10 1.61 7.27 -83.99 -0.61 1.00 16 17 C -0.14 -1.94 10.08 -39.42 -0.40 -2.34 16 18 C -0.10 -1.33 10.01 -39.54 -0.40 -1.72 16 19 C -0.16 -2.33 9.97 -39.94 -0.40 -2.73 16 20 C -0.05 -0.83 10.05 -39.66 -0.40 -1.23 16 21 C -0.09 -1.72 6.37 -105.03 -0.67 -2.39 16 22 H 0.01 0.23 7.92 -51.93 -0.41 -0.18 16 23 H 0.08 1.62 6.76 -51.93 -0.35 1.27 16 24 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 25 H -0.01 -0.22 8.09 -51.93 -0.42 -0.64 16 26 H 0.03 0.90 8.06 -51.93 -0.42 0.49 16 27 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 28 H 0.16 2.63 8.06 -52.49 -0.42 2.21 16 29 H 0.11 1.23 8.06 -52.49 -0.42 0.80 16 30 H 0.12 1.17 8.06 -52.49 -0.42 0.75 16 31 H 0.12 1.37 8.06 -52.49 -0.42 0.95 16 32 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 LS Contribution 276.48 15.07 4.17 4.17 Total: -1.00 -31.65 276.48 -8.39 -40.04 By element: Atomic # 1 Polarization: 5.55 SS G_CDS: -4.01 Total: 1.54 kcal Atomic # 6 Polarization: -12.21 SS G_CDS: -3.33 Total: -15.54 kcal Atomic # 7 Polarization: -46.67 SS G_CDS: -0.20 Total: -46.87 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -31.65 -8.39 -40.04 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258970231.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.008 kcal (2) G-P(sol) polarization free energy of solvation -31.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.359 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds