Wall clock time and date at job start Mon Mar 30 2020 03:08:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46902 * 110.99687 * 2 1 4 4 C 1.50699 * 109.46867 * 293.95305 * 3 2 1 5 5 H 1.07998 * 120.00356 * 0.02562 * 4 3 2 6 6 C 1.37882 * 120.00075 * 180.02562 * 4 3 2 7 7 N 1.31514 * 119.99765 * 359.97438 * 6 4 3 8 8 Si 1.86794 * 120.00223 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47296 * 89.99727 * 8 6 4 10 10 H 1.48502 * 109.47038 * 209.99822 * 8 6 4 11 11 H 1.48506 * 109.47144 * 329.99667 * 8 6 4 12 12 C 1.40724 * 110.99859 * 123.94948 * 2 1 3 13 13 C 1.34595 * 126.52011 * 296.02135 * 12 2 1 14 14 N 1.37626 * 109.74243 * 180.02562 * 13 12 2 15 15 H 0.96996 * 125.08212 * 180.02562 * 14 13 12 16 16 C 1.37653 * 109.83643 * 0.02562 * 14 13 12 17 17 C 1.39173 * 133.38028 * 179.97438 * 16 14 13 18 18 C 1.37735 * 119.77895 * 179.97438 * 17 16 14 19 19 C 1.38854 * 120.65889 * 0.02841 * 18 17 16 20 20 C 1.36611 * 120.53015 * 359.96998 * 19 18 17 21 21 C 1.39613 * 119.77788 * 0.02562 * 20 19 18 22 22 H 1.09007 * 109.47002 * 296.04966 * 1 2 3 23 23 H 1.09004 * 109.47384 * 56.04827 * 1 2 3 24 24 H 1.08994 * 109.47149 * 176.04833 * 1 2 3 25 25 H 1.08994 * 109.47327 * 53.95021 * 3 2 1 26 26 H 1.09003 * 109.46895 * 173.95604 * 3 2 1 27 27 H 0.97002 * 120.00210 * 180.02562 * 7 6 4 28 28 H 1.07992 * 125.12885 * 359.97438 * 13 12 2 29 29 H 1.07996 * 120.11102 * 0.26478 * 17 16 14 30 30 H 1.07997 * 119.66872 * 179.97438 * 18 17 16 31 31 H 1.08002 * 119.73205 * 179.97438 * 19 18 17 32 32 H 1.07995 * 120.11197 * 179.97438 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0471 -1.2985 5 1 1.0739 1.5114 -2.0485 6 6 2.0275 3.3491 -1.5290 7 7 2.7126 4.0016 -0.6155 8 14 1.5825 4.1869 -3.1382 9 1 0.2705 4.8678 -2.9955 10 1 2.6250 5.1876 -3.4801 11 1 1.4981 3.1711 -4.2182 12 6 1.9733 -0.7337 1.0898 13 6 1.8173 -0.4400 2.3940 14 7 2.4527 -1.3879 3.1633 15 1 2.4805 -1.3918 4.1329 16 6 3.0428 -2.3297 2.3511 17 6 3.7930 -3.4744 2.6034 18 6 4.2575 -4.2334 1.5521 19 6 3.9854 -3.8680 0.2404 20 6 3.2510 -2.7483 -0.0299 21 6 2.7701 -1.9642 1.0204 22 1 -0.3633 0.4513 0.9233 23 1 -0.3634 0.5740 -0.8525 24 1 -0.3633 -1.0252 -0.0708 25 1 1.5610 1.9274 0.8308 26 1 3.0797 1.3445 0.1082 27 1 2.9872 4.9178 -0.7775 28 1 1.2760 0.4116 2.7788 29 1 4.0063 -3.7692 3.6202 30 1 4.8398 -5.1212 1.7499 31 1 4.3574 -4.4739 -0.5725 32 1 3.0437 -2.4701 -1.0526 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258970231.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:57 Heat of formation + Delta-G solvation = 43.569197 kcal Electronic energy + Delta-G solvation = -15327.411961 eV Core-core repulsion = 12866.470492 eV Total energy + Delta-G solvation = -2460.941469 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.09995 -38.37164 -37.25412 -34.66864 -32.24988 -30.22351 -29.59516 -28.83201 -26.47515 -23.85395 -23.63084 -22.54662 -20.20259 -18.91333 -18.36605 -17.18942 -16.74475 -16.30222 -15.85077 -15.64919 -14.92813 -14.79913 -14.72511 -14.51090 -13.93324 -13.62666 -13.16129 -12.83298 -12.65326 -12.53284 -12.46916 -12.32152 -12.04830 -11.75799 -11.29806 -10.62626 -10.43313 -9.11254 -9.07953 -8.50520 -8.19395 -6.31040 0.25850 0.77685 1.41638 1.43719 1.55422 1.70922 2.23702 2.41764 3.06824 3.12069 3.32845 3.92068 4.07854 4.30676 4.36913 4.50785 4.60403 4.68857 4.73504 4.85486 4.96602 5.05578 5.15918 5.24140 5.27765 5.61347 5.64734 5.72904 5.78099 5.86428 6.10081 6.29173 6.30536 6.72261 6.84610 6.96219 7.38742 8.90866 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038262 B = 0.006321 C = 0.006001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 731.615054 B = 4428.664627 C = 4664.578427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.491 5.491 3 C 0.222 3.778 4 C -0.526 4.526 5 H 0.065 0.935 6 C 0.002 3.998 7 N -0.935 5.935 8 Si 0.972 3.028 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.265 1.265 12 C -0.012 4.012 13 C 0.015 3.985 14 N -0.581 5.581 15 H 0.431 0.569 16 C 0.089 3.911 17 C -0.135 4.135 18 C -0.096 4.096 19 C -0.153 4.153 20 C -0.082 4.082 21 C -0.126 4.126 22 H 0.019 0.981 23 H 0.065 0.935 24 H 0.067 0.933 25 H -0.030 1.030 26 H -0.009 1.009 27 H 0.265 0.735 28 H 0.171 0.829 29 H 0.151 0.849 30 H 0.160 0.840 31 H 0.143 0.857 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.164 -14.456 7.323 16.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 N -0.212 5.212 3 C 0.097 3.903 4 C -0.564 4.564 5 H 0.083 0.917 6 C -0.196 4.196 7 N -0.576 5.576 8 Si 0.796 3.204 9 H -0.195 1.195 10 H -0.208 1.208 11 H -0.190 1.190 12 C -0.114 4.114 13 C -0.113 4.113 14 N -0.187 5.187 15 H 0.271 0.729 16 C -0.019 4.019 17 C -0.156 4.156 18 C -0.115 4.115 19 C -0.172 4.172 20 C -0.101 4.101 21 C -0.132 4.132 22 H 0.037 0.963 23 H 0.084 0.916 24 H 0.085 0.915 25 H -0.012 1.012 26 H 0.009 0.991 27 H 0.073 0.927 28 H 0.189 0.811 29 H 0.168 0.832 30 H 0.178 0.822 31 H 0.161 0.839 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 0.363 -14.469 7.051 16.100 hybrid contribution -0.430 1.536 0.369 1.637 sum -0.067 -12.933 7.420 14.911 Atomic orbital electron populations 1.22208 0.86334 1.00885 1.00276 1.59450 1.08086 1.14861 1.38828 1.19350 0.92983 0.82677 0.95340 1.21482 1.35013 0.97542 1.02370 0.91711 1.25934 0.94853 0.97967 1.00832 1.70097 1.39258 1.11870 1.36326 0.85341 0.78040 0.78029 0.78960 1.19468 1.20766 1.18954 1.19498 1.05357 0.97277 0.89237 1.22360 1.01760 0.95749 0.91429 1.41556 1.46961 1.21412 1.08731 0.72930 1.18540 1.00072 0.94003 0.89300 1.20386 1.00697 0.93235 1.01256 1.21217 0.99108 0.99912 0.91285 1.20935 1.00809 0.97257 0.98225 1.20465 0.97184 0.94668 0.97771 1.19381 1.03118 0.96746 0.93940 0.96286 0.91642 0.91462 1.01190 0.99101 0.92655 0.81135 0.83172 0.82219 0.83902 0.87381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 2.06 9.28 127.69 1.19 3.25 16 2 N -0.49 -23.42 4.87 -718.93 -3.50 -26.91 16 3 C 0.22 12.46 4.45 85.56 0.38 12.84 16 4 C -0.53 -30.75 8.46 25.60 0.22 -30.54 16 5 H 0.06 3.70 7.12 -2.91 -0.02 3.68 16 6 C 0.00 0.12 5.46 84.66 0.46 0.58 16 7 N -0.94 -57.37 13.29 21.45 0.28 -57.09 16 8 Si 0.97 44.95 29.54 68.60 2.03 46.98 16 9 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 12 C -0.01 -0.52 5.17 39.10 0.20 -0.32 16 13 C 0.02 0.54 11.14 82.95 0.92 1.46 16 14 N -0.58 -16.37 6.10 -186.75 -1.14 -17.51 16 15 H 0.43 8.34 8.96 -92.71 -0.83 7.51 16 16 C 0.09 2.76 7.27 39.05 0.28 3.04 16 17 C -0.14 -3.20 10.08 22.38 0.23 -2.98 16 18 C -0.10 -2.12 10.01 22.30 0.22 -1.90 16 19 C -0.15 -4.05 9.97 22.04 0.22 -3.83 16 20 C -0.08 -2.88 10.05 22.22 0.22 -2.65 16 21 C -0.13 -4.84 6.37 -20.13 -0.13 -4.97 16 22 H 0.02 0.73 7.92 -2.38 -0.02 0.71 16 23 H 0.06 2.80 6.76 -2.39 -0.02 2.79 16 24 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 25 H -0.03 -1.74 8.09 -2.39 -0.02 -1.76 16 26 H -0.01 -0.58 8.06 -2.39 -0.02 -0.60 16 27 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 28 H 0.17 5.63 8.06 -2.91 -0.02 5.60 16 29 H 0.15 2.45 8.06 -2.91 -0.02 2.42 16 30 H 0.16 2.23 8.06 -2.91 -0.02 2.20 16 31 H 0.14 2.94 8.06 -2.91 -0.02 2.92 16 32 H 0.11 3.99 8.06 -2.91 -0.02 3.97 16 Total: -1.00 -71.00 276.48 2.38 -68.62 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: 0.29 Total: 11.92 kcal Atomic # 6 Polarization: -30.43 SS G_CDS: 4.42 Total: -26.01 kcal Atomic # 7 Polarization: -97.16 SS G_CDS: -4.35 Total: -101.51 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Total: -71.00 2.38 -68.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258970231.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.192 kcal (2) G-P(sol) polarization free energy of solvation -71.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.622 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds