Wall clock time and date at job start Mon Mar 30 2020 02:55:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52989 * 1 3 3 C 1.47204 * 109.47463 * 2 1 4 4 N 2.60801 * 109.47188 * 0.02562 * 2 1 3 5 5 C 1.52998 * 109.47501 * 239.99669 * 2 1 3 6 6 C 1.50701 * 109.46773 * 64.19528 * 5 2 1 7 7 H 1.07996 * 120.00488 * 0.02562 * 6 5 2 8 8 C 1.37881 * 119.99778 * 180.02562 * 6 5 2 9 9 N 1.31513 * 119.99994 * 359.97438 * 8 6 5 10 10 Si 1.86794 * 119.99995 * 180.02562 * 8 6 5 11 11 H 1.48499 * 109.47036 * 359.97438 * 10 8 6 12 12 H 1.48496 * 109.47348 * 119.99995 * 10 8 6 13 13 H 1.48504 * 109.46921 * 240.00196 * 10 8 6 14 14 C 1.50707 * 109.46970 * 119.99807 * 2 1 3 15 15 C 1.38119 * 120.03613 * 5.47908 * 14 2 1 16 16 C 1.38268 * 120.07278 * 179.97438 * 15 14 2 17 17 C 1.38304 * 120.15298 * 0.02562 * 16 15 14 18 18 C 1.38089 * 120.07416 * 359.95743 * 17 16 15 19 19 C 1.38897 * 120.03674 * 185.71420 * 14 2 1 20 20 N 1.39678 * 120.07428 * 359.97438 * 19 14 2 21 21 H 1.09002 * 109.47397 * 304.51762 * 1 2 3 22 22 H 1.09003 * 109.47236 * 64.51771 * 1 2 3 23 23 H 1.09000 * 109.47282 * 184.51401 * 1 2 3 24 24 H 1.09002 * 109.47162 * 184.19459 * 5 2 1 25 25 H 1.08993 * 109.46948 * 304.19872 * 5 2 1 26 26 H 0.97000 * 119.99955 * 180.02562 * 9 8 6 27 27 H 1.07995 * 119.96663 * 0.02562 * 15 14 2 28 28 H 1.08000 * 119.92410 * 179.97438 * 16 15 14 29 29 H 1.08000 * 119.96969 * 179.97438 * 17 16 15 30 30 H 1.07991 * 120.03862 * 180.02562 * 18 17 16 31 31 H 0.96995 * 119.99479 * 178.38108 * 20 19 14 32 32 H 0.96995 * 119.99761 * 358.37466 * 20 19 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3993 2.4588 0.0011 5 6 2.0400 -0.7213 -1.2492 6 6 1.6243 0.0466 -2.4774 7 1 1.0538 0.9580 -2.3772 8 6 1.9724 -0.4146 -3.7294 9 7 2.6675 -1.5243 -3.8515 10 14 1.4578 0.5375 -5.2518 11 1 0.6901 1.7422 -4.8463 12 1 2.6664 0.9517 -6.0087 13 1 0.6072 -0.3249 -6.1109 14 6 2.0322 -0.7104 1.2305 15 6 1.1405 -1.3335 2.0815 16 6 1.6005 -1.9860 3.2105 17 6 2.9543 -2.0166 3.4919 18 6 3.8513 -1.3960 2.6452 19 6 3.3920 -0.7351 1.5127 20 7 4.2961 -0.1022 0.6566 21 1 -0.3634 0.5823 0.8467 22 1 -0.3634 0.4421 -0.9277 23 1 -0.3634 -1.0245 0.0809 24 1 3.1274 -0.7868 -1.2123 25 1 1.6166 -1.7249 -1.2875 26 1 2.9127 -1.8486 -4.7322 27 1 0.0827 -1.3118 1.8646 28 1 0.9011 -2.4720 3.8745 29 1 3.3104 -2.5268 4.3747 30 1 4.9083 -1.4207 2.8653 31 1 5.2430 -0.1000 0.8670 32 1 3.9771 0.3349 -0.1484 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259481259.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:32 Heat of formation + Delta-G solvation = 42.878359 kcal Electronic energy + Delta-G solvation = -15720.164094 eV Core-core repulsion = 13259.192668 eV Total energy + Delta-G solvation = -2460.971426 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.76995 -36.59770 -34.25674 -34.06617 -32.51290 -29.55216 -28.13613 -27.11440 -24.80237 -22.17585 -21.47353 -20.87785 -17.54699 -16.74769 -16.44910 -15.45691 -15.02430 -14.37858 -13.77622 -13.55537 -13.50099 -13.16963 -12.83603 -12.69958 -12.20240 -11.99149 -11.43971 -11.37236 -11.13155 -10.99228 -10.90174 -10.70242 -10.41598 -10.25728 -10.14607 -9.64449 -9.18789 -8.48305 -8.38557 -7.08322 -6.12341 -4.16079 1.76464 2.02028 3.25359 3.34039 3.38514 3.51215 3.61180 4.19130 4.34361 4.39095 4.82053 5.19464 5.24757 5.25521 5.45358 5.68672 5.82947 5.88385 5.97391 6.18485 6.28403 6.40505 6.59335 6.63016 6.82757 6.90785 7.00204 7.26150 7.43970 7.47959 7.81606 7.92668 8.18100 8.18942 8.36007 8.88208 9.49277 10.97731 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.033162 B = 0.007897 C = 0.007811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.127628 B = 3544.664812 C = 3583.828381 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.077 3.923 3 C 0.247 3.753 4 N -0.468 5.468 5 C 0.035 3.965 6 C -0.527 4.527 7 H 0.059 0.941 8 C 0.064 3.936 9 N -0.888 5.888 10 Si 0.889 3.111 11 H -0.272 1.272 12 H -0.284 1.284 13 H -0.282 1.282 14 C -0.146 4.146 15 C -0.065 4.065 16 C -0.187 4.187 17 C -0.077 4.077 18 C -0.206 4.206 19 C 0.234 3.766 20 N -0.872 5.872 21 H 0.046 0.954 22 H 0.077 0.923 23 H 0.072 0.928 24 H 0.031 0.969 25 H 0.041 0.959 26 H 0.262 0.738 27 H 0.128 0.872 28 H 0.114 0.886 29 H 0.114 0.886 30 H 0.115 0.885 31 H 0.392 0.608 32 H 0.407 0.593 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.015 -2.194 11.176 11.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.073 3.927 3 C -0.069 4.069 4 N -0.144 5.144 5 C -0.004 4.004 6 C -0.565 4.565 7 H 0.077 0.923 8 C -0.138 4.138 9 N -0.526 5.526 10 Si 0.717 3.283 11 H -0.197 1.197 12 H -0.210 1.210 13 H -0.208 1.208 14 C -0.152 4.152 15 C -0.084 4.084 16 C -0.208 4.208 17 C -0.096 4.096 18 C -0.229 4.229 19 C 0.128 3.872 20 N -0.413 5.413 21 H 0.066 0.934 22 H 0.096 0.904 23 H 0.091 0.909 24 H 0.050 0.950 25 H 0.059 0.941 26 H 0.072 0.928 27 H 0.146 0.854 28 H 0.132 0.868 29 H 0.132 0.868 30 H 0.133 0.867 31 H 0.219 0.781 32 H 0.241 0.759 Dipole moment (debyes) X Y Z Total from point charges -0.377 -0.670 11.036 11.062 hybrid contribution 0.018 0.139 -1.241 1.249 sum -0.359 -0.531 9.795 9.815 Atomic orbital electron populations 1.21849 0.92054 1.02624 1.02386 1.17379 0.96474 0.82706 0.96125 1.29055 0.92493 0.94532 0.90862 1.81023 1.09838 1.12620 1.10925 1.19363 0.97272 0.95960 0.87766 1.21197 1.35490 1.09109 0.90683 0.92299 1.24947 0.94902 0.94925 0.99074 1.69959 1.37839 1.21121 1.23691 0.86570 0.78484 0.80133 0.83127 1.19685 1.21000 1.20809 1.19259 0.91688 1.05984 0.98232 1.20929 0.99344 0.95213 0.92893 1.20783 0.95413 1.05211 0.99368 1.20771 0.93263 0.97530 0.98032 1.20480 0.99416 1.05973 0.97006 1.17663 0.89261 0.90638 0.89654 1.43011 1.08277 1.62428 1.27595 0.93445 0.90412 0.90867 0.95046 0.94065 0.92841 0.85410 0.86771 0.86784 0.86694 0.78087 0.75910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.21 7.02 37.15 0.26 -1.95 16 2 C 0.08 1.49 0.48 -158.45 -0.08 1.42 16 3 C 0.25 5.20 10.07 -20.76 -0.21 4.99 16 4 N -0.47 -10.37 18.54 42.15 0.78 -9.59 16 5 C 0.03 0.81 3.78 -27.88 -0.11 0.70 16 6 C -0.53 -13.70 7.71 -34.44 -0.27 -13.96 16 7 H 0.06 1.54 6.53 -52.49 -0.34 1.19 16 8 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 9 N -0.89 -25.04 13.29 55.43 0.74 -24.31 16 10 Si 0.89 21.04 29.54 -169.99 -5.02 16.02 16 11 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 14 C -0.15 -2.57 4.74 -104.42 -0.50 -3.06 16 15 C -0.07 -0.98 9.02 -39.61 -0.36 -1.34 16 16 C -0.19 -2.53 10.04 -39.55 -0.40 -2.93 16 17 C -0.08 -1.03 10.04 -39.61 -0.40 -1.43 16 18 C -0.21 -3.03 9.90 -39.38 -0.39 -3.42 16 19 C 0.23 4.02 6.36 -83.78 -0.53 3.48 16 20 N -0.87 -14.87 8.02 32.41 0.26 -14.61 16 21 H 0.05 0.69 8.01 -51.93 -0.42 0.28 16 22 H 0.08 1.42 6.77 -51.93 -0.35 1.06 16 23 H 0.07 1.10 6.95 -51.93 -0.36 0.74 16 24 H 0.03 0.77 5.75 -51.93 -0.30 0.48 16 25 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 26 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 27 H 0.13 1.67 5.88 -52.49 -0.31 1.36 16 28 H 0.11 1.24 8.06 -52.49 -0.42 0.82 16 29 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.12 1.45 8.06 -52.49 -0.42 1.02 16 31 H 0.39 5.51 8.84 -40.82 -0.36 5.15 16 32 H 0.41 7.94 4.55 -40.82 -0.19 7.76 16 LS Contribution 269.22 15.07 4.06 4.06 Total: -1.00 -29.22 269.22 -5.70 -34.91 By element: Atomic # 1 Polarization: 12.83 SS G_CDS: -3.45 Total: 9.38 kcal Atomic # 6 Polarization: -12.80 SS G_CDS: -3.06 Total: -15.87 kcal Atomic # 7 Polarization: -50.29 SS G_CDS: 1.78 Total: -48.51 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -29.22 -5.70 -34.91 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259481259.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.793 kcal (2) G-P(sol) polarization free energy of solvation -29.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.915 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds