Wall clock time and date at job start Mon Mar 30 2020 03:32:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.38234 * 120.00348 * 2 1 4 4 C 1.38237 * 119.99999 * 179.97438 * 3 2 1 5 5 C 1.38235 * 120.00176 * 359.95940 * 4 3 2 6 6 C 1.50697 * 119.99700 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.46999 * 90.00313 * 6 5 4 8 8 C 1.52995 * 109.47235 * 185.14882 * 7 6 5 9 9 C 1.50697 * 115.55302 * 294.78467 * 8 7 6 10 10 H 1.08003 * 120.00039 * 95.19601 * 9 8 7 11 11 C 1.37877 * 119.99907 * 274.92889 * 9 8 7 12 12 N 1.31512 * 119.99904 * 355.41512 * 11 9 8 13 13 Si 1.86805 * 119.99963 * 175.41907 * 11 9 8 14 14 H 1.48498 * 109.47081 * 359.97438 * 13 11 9 15 15 H 1.48494 * 109.47235 * 119.99862 * 13 11 9 16 16 H 1.48503 * 109.46842 * 240.00007 * 13 11 9 17 17 C 1.53005 * 117.49643 * 80.45069 * 8 7 6 18 18 C 1.52999 * 117.50004 * 149.11108 * 8 7 6 19 19 C 1.38238 * 119.99841 * 0.27412 * 5 4 3 20 20 C 1.38235 * 119.99793 * 179.97438 * 2 1 3 21 21 H 1.09004 * 109.46765 * 90.00062 * 1 2 3 22 22 H 1.08993 * 109.47690 * 209.99997 * 1 2 3 23 23 H 1.08999 * 109.46978 * 330.00801 * 1 2 3 24 24 H 1.08003 * 119.99698 * 359.97438 * 3 2 1 25 25 H 1.08000 * 119.99639 * 179.97438 * 4 3 2 26 26 H 1.08999 * 109.47546 * 330.00041 * 6 5 4 27 27 H 1.09003 * 109.46911 * 209.99422 * 6 5 4 28 28 H 1.09002 * 109.46622 * 65.14941 * 7 6 5 29 29 H 1.09000 * 109.46799 * 305.15479 * 7 6 5 30 30 H 0.96999 * 119.99904 * 185.00305 * 12 11 9 31 31 H 1.08997 * 117.49691 * 214.99867 * 17 8 7 32 32 H 1.08996 * 117.49856 * 0.02673 * 17 8 7 33 33 H 1.09002 * 117.49320 * 359.97438 * 18 8 7 34 34 H 1.09000 * 117.50039 * 144.97580 * 18 8 7 35 35 H 1.07994 * 119.99658 * 179.72517 * 19 5 4 36 36 H 1.08002 * 120.00339 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1970 0.0005 5 6 4.2717 -0.0002 0.0019 6 6 5.7787 -0.0001 0.0019 7 6 6.2887 0.0015 1.4445 8 6 7.8131 0.1310 1.4463 9 6 8.5646 -1.0270 0.8419 10 1 8.8732 -0.9896 -0.1925 11 6 8.8630 -2.1319 1.6108 12 7 8.5724 -2.1383 2.8933 13 14 9.6803 -3.6195 0.8307 14 1 9.9000 -3.3622 -0.6152 15 1 10.9853 -3.8715 1.4930 16 1 8.8047 -4.8077 0.9941 17 6 8.4035 1.5303 1.2607 18 6 8.4595 0.8511 2.6314 19 6 3.5805 -1.1973 -0.0030 20 6 2.1981 -1.1972 0.0005 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3634 -0.8899 0.5138 23 1 -0.3633 0.8901 0.5137 24 1 1.6582 2.1324 -0.0004 25 1 4.1206 2.1323 0.0001 26 1 6.1421 0.8892 -0.5129 27 1 6.1420 -0.8908 -0.5108 28 1 6.0026 -0.9305 1.9319 29 1 5.8519 0.8423 1.9833 30 1 8.8470 -2.8844 3.4491 31 1 9.3354 1.6132 0.7015 32 1 7.7058 2.3586 1.1377 33 1 7.7986 1.2330 3.4095 34 1 9.4281 0.4871 2.9741 35 1 4.1205 -2.1325 -0.0064 36 1 1.6581 -2.1325 0.0005 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259665668.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:16 Heat of formation + Delta-G solvation = 10.289092 kcal Electronic energy + Delta-G solvation = -15382.223054 eV Core-core repulsion = 13023.378795 eV Total energy + Delta-G solvation = -2358.844259 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.33632 -38.56488 -35.01347 -33.94052 -31.74474 -31.46496 -27.90208 -27.07607 -24.11546 -23.52830 -22.82651 -21.38317 -20.81199 -17.86693 -16.88264 -16.63747 -16.35349 -15.92868 -15.63871 -14.91361 -14.54206 -14.30052 -14.10019 -13.90758 -13.51246 -13.16747 -12.99574 -12.86739 -12.85574 -12.39810 -12.32239 -11.98897 -11.92262 -11.85557 -11.54776 -11.11992 -10.77994 -10.36660 -9.87095 -9.76441 -9.22288 -8.06683 -6.19228 0.50833 0.56052 1.38850 1.42067 1.52303 2.43105 2.90225 3.20978 3.55103 3.97458 3.99202 4.16301 4.22434 4.36147 4.47335 4.57287 4.60844 4.69336 4.76756 4.89158 4.90965 4.92585 5.02517 5.03523 5.11036 5.17881 5.28991 5.34119 5.40289 5.54046 5.61108 5.69300 5.75207 5.75765 5.88077 5.97143 6.22317 6.46186 6.88972 7.48577 9.00673 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.029742 B = 0.006371 C = 0.005618 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.219349 B = 4393.963524 C = 4982.936648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.105 4.105 3 C -0.123 4.123 4 C -0.126 4.126 5 C -0.093 4.093 6 C -0.058 4.058 7 C -0.047 4.047 8 C 0.015 3.985 9 C -0.502 4.502 10 H 0.052 0.948 11 C 0.024 3.976 12 N -0.910 5.910 13 Si 0.945 3.055 14 H -0.266 1.266 15 H -0.282 1.282 16 H -0.282 1.282 17 C -0.189 4.189 18 C -0.165 4.165 19 C -0.134 4.134 20 C -0.127 4.127 21 H 0.079 0.921 22 H 0.071 0.929 23 H 0.076 0.924 24 H 0.144 0.856 25 H 0.129 0.871 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.028 0.972 29 H 0.039 0.961 30 H 0.258 0.742 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.067 0.933 34 H 0.055 0.945 35 H 0.111 0.889 36 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.746 4.800 -5.642 15.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.105 4.105 3 C -0.141 4.141 4 C -0.144 4.144 5 C -0.093 4.093 6 C -0.095 4.095 7 C -0.085 4.085 8 C 0.015 3.985 9 C -0.540 4.540 10 H 0.070 0.930 11 C -0.176 4.176 12 N -0.548 5.548 13 Si 0.771 3.229 14 H -0.191 1.191 15 H -0.208 1.208 16 H -0.208 1.208 17 C -0.226 4.226 18 C -0.202 4.202 19 C -0.152 4.152 20 C -0.144 4.144 21 H 0.098 0.902 22 H 0.090 0.910 23 H 0.095 0.905 24 H 0.162 0.838 25 H 0.147 0.853 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.046 0.954 29 H 0.057 0.943 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.109 0.891 33 H 0.085 0.915 34 H 0.073 0.927 35 H 0.129 0.871 36 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -13.792 4.658 -5.497 15.561 hybrid contribution 1.060 -1.073 0.097 1.511 sum -12.732 3.585 -5.400 14.287 Atomic orbital electron populations 1.20793 0.89002 1.03539 1.03068 1.20265 0.97655 0.92762 0.99847 1.21303 0.93635 0.98609 1.00561 1.21235 0.94932 0.97462 1.00760 1.20170 0.95894 0.93975 0.99220 1.20327 0.89949 1.02072 0.97172 1.20823 0.94327 0.98461 0.94929 1.19091 0.91530 0.89901 0.97982 1.20745 1.35912 1.00594 0.96784 0.92977 1.25653 0.96170 1.00526 0.95257 1.70130 1.46850 1.32173 1.05671 0.85706 0.78086 0.80033 0.79071 1.19056 1.20817 1.20796 1.22993 1.02339 0.97158 1.00082 1.22384 1.01283 1.05620 0.90932 1.21212 0.95128 0.97668 1.01218 1.21244 0.93436 0.98790 1.00974 0.90233 0.90997 0.90502 0.83784 0.85278 0.91246 0.92547 0.95362 0.94279 0.93313 0.90766 0.89103 0.91470 0.92672 0.87100 0.84630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 10.01 71.24 0.71 -1.02 16 2 C -0.11 -2.53 5.88 -19.87 -0.12 -2.65 16 3 C -0.12 -3.05 9.70 22.27 0.22 -2.83 16 4 C -0.13 -3.70 9.70 22.27 0.22 -3.48 16 5 C -0.09 -3.19 5.13 -19.87 -0.10 -3.29 16 6 C -0.06 -2.27 5.15 29.85 0.15 -2.11 16 7 C -0.05 -2.15 5.07 30.59 0.16 -2.00 16 8 C 0.02 0.76 1.42 -52.93 -0.08 0.68 16 9 C -0.50 -27.58 8.32 25.60 0.21 -27.37 16 10 H 0.05 2.85 7.82 -2.91 -0.02 2.83 16 11 C 0.02 1.32 5.43 84.66 0.46 1.77 16 12 N -0.91 -53.08 12.65 21.45 0.27 -52.81 16 13 Si 0.94 43.85 29.54 68.60 2.03 45.88 16 14 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 15 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 16 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 17 C -0.19 -8.19 9.96 30.62 0.30 -7.89 16 18 C -0.16 -8.05 9.14 30.62 0.28 -7.77 16 19 C -0.13 -4.44 9.70 22.27 0.22 -4.23 16 20 C -0.13 -3.45 9.70 22.27 0.22 -3.23 16 21 H 0.08 1.10 8.14 -2.38 -0.02 1.08 16 22 H 0.07 1.05 8.08 -2.39 -0.02 1.03 16 23 H 0.08 1.04 8.09 -2.39 -0.02 1.02 16 24 H 0.14 2.67 8.06 -2.91 -0.02 2.64 16 25 H 0.13 3.41 8.06 -2.91 -0.02 3.38 16 26 H 0.07 2.55 8.09 -2.39 -0.02 2.53 16 27 H 0.06 2.39 7.81 -2.39 -0.02 2.37 16 28 H 0.03 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.04 1.65 8.09 -2.39 -0.02 1.64 16 30 H 0.26 14.37 8.32 -92.71 -0.77 13.60 16 31 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 32 H 0.09 3.41 8.14 -2.39 -0.02 3.39 16 33 H 0.07 3.11 8.14 -2.39 -0.02 3.09 16 34 H 0.05 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.11 3.78 8.06 -2.91 -0.02 3.76 16 36 H 0.14 3.03 8.06 -2.91 -0.02 3.01 16 Total: -1.00 -61.28 305.21 6.17 -55.11 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: 1.02 Total: 17.24 kcal Atomic # 6 Polarization: -68.27 SS G_CDS: 2.85 Total: -65.42 kcal Atomic # 7 Polarization: -53.08 SS G_CDS: 0.27 Total: -52.81 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Total: -61.28 6.17 -55.11 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259665668.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.402 kcal (2) G-P(sol) polarization free energy of solvation -61.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.113 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.289 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds