Wall clock time and date at job start Mon Mar 30 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.47201 * 109.47254 * 2 1 4 4 N 2.60805 * 109.47187 * 359.97438 * 2 1 3 5 5 C 1.52997 * 109.46941 * 240.00261 * 2 1 3 6 6 C 1.50698 * 109.47588 * 60.00223 * 5 2 1 7 7 H 1.08005 * 119.99730 * 359.97438 * 6 5 2 8 8 C 1.37877 * 120.00191 * 180.02562 * 6 5 2 9 9 N 1.31514 * 119.99872 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00145 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46632 * 90.00356 * 10 8 6 12 12 H 1.48492 * 109.47480 * 210.00319 * 10 8 6 13 13 H 1.48503 * 109.47144 * 330.01136 * 10 8 6 14 14 C 1.50698 * 109.47127 * 119.99799 * 2 1 3 15 15 C 1.38288 * 119.92134 * 119.72441 * 14 2 1 16 16 C 1.38107 * 120.07582 * 180.28015 * 15 14 2 17 17 C 1.38910 * 119.92007 * 359.97438 * 16 15 14 18 18 N 1.39676 * 120.07453 * 180.02562 * 17 16 15 19 19 C 1.38912 * 119.85498 * 0.02562 * 17 16 15 20 20 C 1.38099 * 119.92393 * 359.97438 * 19 17 16 21 21 H 1.09003 * 109.46891 * 300.00611 * 1 2 3 22 22 H 1.09000 * 109.47342 * 59.99555 * 1 2 3 23 23 H 1.08990 * 109.47351 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47140 * 179.97438 * 5 2 1 25 25 H 1.08997 * 109.47322 * 299.99591 * 5 2 1 26 26 H 0.97002 * 120.00330 * 179.97438 * 9 8 6 27 27 H 1.07997 * 119.96260 * 0.25959 * 15 14 2 28 28 H 1.07996 * 120.03881 * 179.97438 * 16 15 14 29 29 H 0.96992 * 120.00695 * 179.97438 * 18 17 16 30 30 H 0.97001 * 119.99607 * 359.97438 * 18 17 16 31 31 H 1.08001 * 120.03609 * 179.97438 * 19 17 16 32 32 H 1.07995 * 119.96616 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3994 2.4589 -0.0011 5 6 2.0399 -0.7212 -1.2493 6 6 1.5377 -0.0108 -2.4797 7 1 0.9164 0.8671 -2.3806 8 6 1.8703 -0.4821 -3.7320 9 7 1.4324 0.1382 -4.8058 10 14 2.9442 -2.0009 -3.9034 11 1 2.0855 -3.2117 -3.9484 12 1 3.7357 -1.9087 -5.1564 13 1 3.8648 -2.0900 -2.7416 14 6 2.0323 -0.7104 1.2305 15 6 2.8225 -1.8379 1.1017 16 6 3.2798 -2.4947 2.2272 17 6 2.9456 -2.0212 3.4896 18 7 3.4067 -2.6827 4.6301 19 6 2.1516 -0.8883 3.6153 20 6 1.6977 -0.2363 2.4857 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0275 0.0005 24 1 3.1300 -0.7208 -1.2495 25 1 1.6767 -1.7488 -1.2493 26 1 1.6667 -0.1932 -5.6868 27 1 3.0821 -2.2054 0.1200 28 1 3.8966 -3.3755 2.1260 29 1 3.1730 -2.3510 5.5111 30 1 3.9608 -3.4739 4.5411 31 1 1.8896 -0.5178 4.5954 32 1 1.0807 0.6447 2.5826 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259748717.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:39 Heat of formation + Delta-G solvation = 42.190493 kcal Electronic energy + Delta-G solvation = -15345.602713 eV Core-core repulsion = 12884.601459 eV Total energy + Delta-G solvation = -2461.001254 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.63491 -37.07875 -34.68912 -33.43856 -32.03189 -30.79696 -28.26216 -27.38979 -24.15221 -22.82643 -21.50856 -20.63617 -17.60924 -16.83444 -16.58831 -16.26114 -14.75697 -14.27244 -14.09503 -13.66482 -13.29916 -13.11706 -12.95440 -12.74191 -12.60096 -12.15889 -11.93762 -11.40428 -11.22420 -11.02197 -10.84498 -10.64445 -10.47203 -10.22375 -9.82441 -9.66633 -9.16089 -8.70436 -8.57397 -7.35850 -6.07196 -4.06852 1.66594 1.77615 3.27792 3.36762 3.36958 3.63355 3.68766 3.87947 4.06964 4.41063 4.82866 5.09886 5.18677 5.26797 5.30849 5.67336 5.70911 5.82910 5.92077 5.99903 6.29480 6.38715 6.43896 6.52860 6.63417 6.89244 6.95162 7.03565 7.07969 7.14720 7.54139 7.68574 7.73465 8.42130 8.48289 8.96164 9.52937 11.05715 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029050 B = 0.008072 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.622590 B = 3467.819929 C = 4105.568782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.090 3.910 3 C 0.251 3.749 4 N -0.467 5.467 5 C -0.003 4.003 6 C -0.523 4.523 7 H 0.077 0.923 8 C 0.072 3.928 9 N -0.897 5.897 10 Si 0.873 3.127 11 H -0.274 1.274 12 H -0.288 1.288 13 H -0.264 1.264 14 C -0.123 4.123 15 C -0.057 4.057 16 C -0.198 4.198 17 C 0.207 3.793 18 N -0.884 5.884 19 C -0.199 4.199 20 C -0.062 4.062 21 H 0.045 0.955 22 H 0.080 0.920 23 H 0.069 0.931 24 H 0.027 0.973 25 H 0.036 0.964 26 H 0.264 0.736 27 H 0.134 0.866 28 H 0.118 0.882 29 H 0.394 0.606 30 H 0.395 0.605 31 H 0.116 0.884 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.349 -8.123 16.599 18.529 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.087 3.913 3 C -0.067 4.067 4 N -0.142 5.142 5 C -0.041 4.041 6 C -0.561 4.561 7 H 0.095 0.905 8 C -0.130 4.130 9 N -0.536 5.536 10 Si 0.700 3.300 11 H -0.200 1.200 12 H -0.214 1.214 13 H -0.188 1.188 14 C -0.126 4.126 15 C -0.076 4.076 16 C -0.221 4.221 17 C 0.104 3.896 18 N -0.423 5.423 19 C -0.222 4.222 20 C -0.081 4.081 21 H 0.064 0.936 22 H 0.099 0.901 23 H 0.088 0.912 24 H 0.045 0.955 25 H 0.054 0.946 26 H 0.074 0.926 27 H 0.152 0.848 28 H 0.136 0.864 29 H 0.222 0.778 30 H 0.223 0.777 31 H 0.134 0.866 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 1.910 -6.459 16.350 17.683 hybrid contribution 0.599 -1.367 -0.006 1.493 sum 2.509 -7.826 16.344 18.294 Atomic orbital electron populations 1.21803 0.91416 1.03028 1.02139 1.17072 0.96364 0.82957 0.94951 1.28854 0.92429 0.94260 0.91125 1.81012 1.09818 1.12860 1.10523 1.19794 0.96901 0.96065 0.91369 1.21051 1.32669 1.13644 0.88737 0.90501 1.24967 0.95457 0.96779 0.95821 1.69902 1.45396 1.40308 0.97957 0.86880 0.81327 0.83811 0.77976 1.19994 1.21352 1.18813 1.19531 1.01814 0.97813 0.93431 1.21083 0.94010 0.93761 0.98717 1.20563 1.07269 1.03333 0.90909 1.17786 0.92953 0.91714 0.87195 1.42418 1.60476 1.33756 1.05666 1.20453 1.04992 0.98104 0.98612 1.20767 0.97470 0.98367 0.91515 0.93631 0.90145 0.91177 0.95524 0.94582 0.92629 0.84810 0.86432 0.77811 0.77731 0.86637 0.86328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 7.99 37.16 0.30 -1.85 16 2 C 0.09 1.72 0.56 -158.45 -0.09 1.63 16 3 C 0.25 5.39 12.48 -20.76 -0.26 5.13 16 4 N -0.47 -10.82 18.54 42.16 0.78 -10.04 16 5 C 0.00 -0.07 1.74 -27.89 -0.05 -0.12 16 6 C -0.52 -14.02 8.35 -34.44 -0.29 -14.31 16 7 H 0.08 2.25 6.63 -52.48 -0.35 1.90 16 8 C 0.07 2.01 5.47 -17.82 -0.10 1.91 16 9 N -0.90 -27.02 13.96 55.43 0.77 -26.24 16 10 Si 0.87 20.63 27.47 -169.99 -4.67 15.96 16 11 H -0.27 -6.28 7.11 56.52 0.40 -5.87 16 12 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 13 H -0.26 -5.87 6.54 56.52 0.37 -5.50 16 14 C -0.12 -2.02 4.74 -104.59 -0.50 -2.52 16 15 C -0.06 -0.89 8.97 -39.61 -0.36 -1.24 16 16 C -0.20 -2.63 9.90 -39.38 -0.39 -3.02 16 17 C 0.21 2.53 6.75 -83.79 -0.57 1.96 16 18 N -0.88 -7.54 9.09 32.41 0.29 -7.24 16 19 C -0.20 -2.53 9.90 -39.38 -0.39 -2.92 16 20 C -0.06 -0.91 8.79 -39.62 -0.35 -1.26 16 21 H 0.04 0.66 7.39 -51.93 -0.38 0.28 16 22 H 0.08 1.55 6.62 -51.93 -0.34 1.20 16 23 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 24 H 0.03 0.60 6.58 -51.93 -0.34 0.26 16 25 H 0.04 0.74 6.93 -51.93 -0.36 0.38 16 26 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 27 H 0.13 2.13 5.88 -52.49 -0.31 1.82 16 28 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 29 H 0.39 2.62 8.84 -40.82 -0.36 2.26 16 30 H 0.40 2.68 8.84 -40.82 -0.36 2.32 16 31 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 32 H 0.12 1.62 7.56 -52.49 -0.40 1.22 16 LS Contribution 273.29 15.07 4.12 4.12 Total: -1.00 -31.45 273.29 -5.37 -36.82 By element: Atomic # 1 Polarization: 6.88 SS G_CDS: -3.64 Total: 3.24 kcal Atomic # 6 Polarization: -13.58 SS G_CDS: -3.03 Total: -16.61 kcal Atomic # 7 Polarization: -45.38 SS G_CDS: 1.85 Total: -43.53 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -31.45 -5.37 -36.82 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259748717.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.011 kcal (2) G-P(sol) polarization free energy of solvation -31.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.370 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.190 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds