Wall clock time and date at job start Mon Mar 30 2020 02:55:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.47201 * 109.47254 * 2 1 4 4 N 2.60805 * 109.47187 * 359.97438 * 2 1 3 5 5 C 1.52997 * 109.46941 * 240.00261 * 2 1 3 6 6 C 1.50698 * 109.47588 * 60.00223 * 5 2 1 7 7 H 1.08005 * 119.99730 * 359.97438 * 6 5 2 8 8 C 1.37877 * 120.00191 * 180.02562 * 6 5 2 9 9 N 1.31514 * 119.99872 * 180.02562 * 8 6 5 10 10 Si 1.86797 * 120.00145 * 359.97438 * 8 6 5 11 11 H 1.48501 * 109.46632 * 90.00356 * 10 8 6 12 12 H 1.48492 * 109.47480 * 210.00319 * 10 8 6 13 13 H 1.48503 * 109.47144 * 330.01136 * 10 8 6 14 14 C 1.50698 * 109.47127 * 119.99799 * 2 1 3 15 15 C 1.38288 * 119.92134 * 119.72441 * 14 2 1 16 16 C 1.38107 * 120.07582 * 180.28015 * 15 14 2 17 17 C 1.38910 * 119.92007 * 359.97438 * 16 15 14 18 18 N 1.39676 * 120.07453 * 180.02562 * 17 16 15 19 19 C 1.38912 * 119.85498 * 0.02562 * 17 16 15 20 20 C 1.38099 * 119.92393 * 359.97438 * 19 17 16 21 21 H 1.09003 * 109.46891 * 300.00611 * 1 2 3 22 22 H 1.09000 * 109.47342 * 59.99555 * 1 2 3 23 23 H 1.08990 * 109.47351 * 180.02562 * 1 2 3 24 24 H 1.09005 * 109.47140 * 179.97438 * 5 2 1 25 25 H 1.08997 * 109.47322 * 299.99591 * 5 2 1 26 26 H 0.97002 * 120.00330 * 179.97438 * 9 8 6 27 27 H 1.07997 * 119.96260 * 0.25959 * 15 14 2 28 28 H 1.07996 * 120.03881 * 179.97438 * 16 15 14 29 29 H 0.96992 * 120.00695 * 179.97438 * 18 17 16 30 30 H 0.97001 * 119.99607 * 359.97438 * 18 17 16 31 31 H 1.08001 * 120.03609 * 179.97438 * 19 17 16 32 32 H 1.07995 * 119.96616 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0207 1.3878 0.0000 4 7 2.3994 2.4589 -0.0011 5 6 2.0399 -0.7212 -1.2493 6 6 1.5377 -0.0108 -2.4797 7 1 0.9164 0.8671 -2.3806 8 6 1.8703 -0.4821 -3.7320 9 7 1.4324 0.1382 -4.8058 10 14 2.9442 -2.0009 -3.9034 11 1 2.0855 -3.2117 -3.9484 12 1 3.7357 -1.9087 -5.1564 13 1 3.8648 -2.0900 -2.7416 14 6 2.0323 -0.7104 1.2305 15 6 2.8225 -1.8379 1.1017 16 6 3.2798 -2.4947 2.2272 17 6 2.9456 -2.0212 3.4896 18 7 3.4067 -2.6827 4.6301 19 6 2.1516 -0.8883 3.6153 20 6 1.6977 -0.2363 2.4857 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 0.5139 -0.8899 23 1 -0.3633 -1.0275 0.0005 24 1 3.1300 -0.7208 -1.2495 25 1 1.6767 -1.7488 -1.2493 26 1 1.6667 -0.1932 -5.6868 27 1 3.0821 -2.2054 0.1200 28 1 3.8966 -3.3755 2.1260 29 1 3.1730 -2.3510 5.5111 30 1 3.9608 -3.4739 4.5411 31 1 1.8896 -0.5178 4.5954 32 1 1.0807 0.6447 2.5826 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259748717.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:39 Heat of formation + Delta-G solvation = 21.576926 kcal Electronic energy + Delta-G solvation = -15346.496584 eV Core-core repulsion = 12884.601459 eV Total energy + Delta-G solvation = -2461.895125 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.80209 -38.45358 -36.22450 -34.96395 -33.72540 -31.86491 -29.86881 -28.62780 -25.73687 -24.10250 -22.82941 -22.02011 -19.28783 -17.94376 -17.85455 -17.46393 -16.29298 -16.00172 -15.36752 -14.87991 -14.73054 -14.54096 -14.31997 -14.11480 -14.06037 -13.70342 -13.42360 -13.14962 -12.81464 -12.61557 -12.29271 -12.15196 -11.92321 -11.68763 -11.31819 -11.23874 -11.05029 -10.70356 -9.73271 -8.27834 -8.21499 -6.25805 0.63693 0.70047 1.41989 1.44751 1.54717 1.93949 1.97829 2.42412 2.93230 3.13020 3.14918 3.35735 3.94263 4.07526 4.24857 4.34527 4.37460 4.63525 4.80800 4.98589 5.03336 5.08738 5.17528 5.26972 5.34084 5.45396 5.49106 5.54593 5.74841 5.91811 6.04644 6.30658 6.70361 6.74491 6.82119 7.12263 7.37628 8.94902 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.029050 B = 0.008072 C = 0.006818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.622590 B = 3467.819929 C = 4105.568782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.094 3.906 3 C 0.259 3.741 4 N -0.506 5.506 5 C 0.002 3.998 6 C -0.521 4.521 7 H 0.036 0.964 8 C 0.006 3.994 9 N -0.953 5.953 10 Si 0.940 3.060 11 H -0.257 1.257 12 H -0.294 1.294 13 H -0.238 1.238 14 C -0.146 4.146 15 C -0.070 4.070 16 C -0.202 4.202 17 C 0.215 3.785 18 N -0.867 5.867 19 C -0.201 4.201 20 C -0.067 4.067 21 H 0.070 0.930 22 H 0.048 0.952 23 H 0.087 0.913 24 H 0.025 0.975 25 H 0.058 0.942 26 H 0.264 0.736 27 H 0.127 0.873 28 H 0.140 0.860 29 H 0.407 0.593 30 H 0.407 0.593 31 H 0.141 0.859 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.327 -10.697 19.408 22.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.090 3.910 3 C -0.057 4.057 4 N -0.182 5.182 5 C -0.036 4.036 6 C -0.559 4.559 7 H 0.054 0.946 8 C -0.191 4.191 9 N -0.593 5.593 10 Si 0.763 3.237 11 H -0.181 1.181 12 H -0.221 1.221 13 H -0.161 1.161 14 C -0.149 4.149 15 C -0.088 4.088 16 C -0.225 4.225 17 C 0.109 3.891 18 N -0.407 5.407 19 C -0.224 4.224 20 C -0.086 4.086 21 H 0.089 0.911 22 H 0.067 0.933 23 H 0.106 0.894 24 H 0.043 0.957 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.145 0.855 28 H 0.158 0.842 29 H 0.236 0.764 30 H 0.236 0.764 31 H 0.158 0.842 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 2.895 -9.056 19.225 21.447 hybrid contribution 0.274 -0.531 -0.762 0.968 sum 3.169 -9.588 18.463 21.044 Atomic orbital electron populations 1.21780 0.90337 1.04091 1.01809 1.17133 0.97244 0.81312 0.95310 1.29567 0.91445 0.94806 0.89926 1.80992 1.11238 1.14118 1.11882 1.19722 0.96609 0.96850 0.90454 1.21350 1.31300 1.12404 0.90878 0.94611 1.25952 0.97210 1.00538 0.95383 1.70079 1.47807 1.42824 0.98639 0.85814 0.79793 0.79784 0.78353 1.18125 1.22080 1.16142 1.19262 1.04168 0.98852 0.92605 1.21085 0.94471 0.93941 0.99349 1.20756 1.07265 1.03852 0.90601 1.17895 0.91914 0.91331 0.87954 1.42409 1.59502 1.33538 1.05272 1.20703 1.04552 0.98025 0.99077 1.20834 0.97681 0.98652 0.91426 0.91102 0.93296 0.89379 0.95700 0.92366 0.92737 0.85527 0.84235 0.76385 0.76393 0.84166 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.14 7.99 71.98 0.57 -3.57 16 2 C 0.09 3.52 0.56 -54.74 -0.03 3.49 16 3 C 0.26 11.31 12.48 89.44 1.12 12.43 16 4 N -0.51 -24.03 18.54 20.01 0.37 -23.65 16 5 C 0.00 0.08 1.74 29.85 0.05 0.14 16 6 C -0.52 -28.66 8.35 25.60 0.21 -28.45 16 7 H 0.04 2.21 6.63 -2.91 -0.02 2.19 16 8 C 0.01 0.33 5.47 84.65 0.46 0.79 16 9 N -0.95 -59.46 13.96 21.45 0.30 -59.16 16 10 Si 0.94 42.19 27.47 68.60 1.88 44.07 16 11 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 12 H -0.29 -13.48 7.11 99.48 0.71 -12.77 16 13 H -0.24 -9.64 6.54 99.48 0.65 -8.99 16 14 C -0.15 -4.54 4.74 -19.84 -0.09 -4.63 16 15 C -0.07 -2.00 8.97 22.25 0.20 -1.80 16 16 C -0.20 -4.64 9.90 22.40 0.22 -4.42 16 17 C 0.21 4.38 6.75 38.21 0.26 4.64 16 18 N -0.87 -10.83 9.09 -51.37 -0.47 -11.30 16 19 C -0.20 -4.39 9.90 22.40 0.22 -4.17 16 20 C -0.07 -1.80 8.79 22.25 0.20 -1.60 16 21 H 0.07 2.00 7.39 -2.39 -0.02 1.99 16 22 H 0.05 1.95 6.62 -2.39 -0.02 1.93 16 23 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 24 H 0.02 1.09 6.58 -2.38 -0.02 1.07 16 25 H 0.06 2.29 6.93 -2.39 -0.02 2.27 16 26 H 0.26 15.46 8.31 -92.71 -0.77 14.69 16 27 H 0.13 3.72 5.88 -2.91 -0.02 3.70 16 28 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 29 H 0.41 3.49 8.84 -92.71 -0.82 2.67 16 30 H 0.41 3.62 8.84 -92.71 -0.82 2.80 16 31 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 32 H 0.12 3.09 7.56 -2.91 -0.02 3.07 16 Total: -1.00 -70.16 273.29 4.94 -65.22 By element: Atomic # 1 Polarization: 12.52 SS G_CDS: -0.54 Total: 11.98 kcal Atomic # 6 Polarization: -30.55 SS G_CDS: 3.39 Total: -27.15 kcal Atomic # 7 Polarization: -94.32 SS G_CDS: 0.20 Total: -94.12 kcal Atomic # 14 Polarization: 42.19 SS G_CDS: 1.88 Total: 44.07 kcal Total: -70.16 4.94 -65.22 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259748717.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.797 kcal (2) G-P(sol) polarization free energy of solvation -70.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds