Wall clock time and date at job start Mon Mar 30 2020 03:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38251 * 119.99657 * 2 1 4 4 C 1.38215 * 120.00066 * 180.29665 * 3 2 1 5 5 C 1.38267 * 119.99377 * 359.70273 * 4 3 2 6 6 C 1.38209 * 120.00062 * 0.02562 * 5 4 3 7 7 C 1.38204 * 119.99725 * 179.74730 * 2 1 3 8 8 C 1.50695 * 120.00621 * 359.97438 * 7 2 1 9 9 C 1.52998 * 115.55102 * 279.65352 * 8 7 2 10 10 H 1.09004 * 109.47074 * 63.22805 * 9 8 7 11 11 C 1.53006 * 109.47180 * 183.22720 * 9 8 7 12 12 C 1.50701 * 109.47413 * 303.23102 * 9 8 7 13 13 H 1.08002 * 119.99233 * 354.56517 * 12 9 8 14 14 C 1.37871 * 120.00455 * 174.56545 * 12 9 8 15 15 N 1.31522 * 119.99808 * 4.18778 * 14 12 9 16 16 Si 1.86802 * 120.00308 * 184.18751 * 14 12 9 17 17 H 1.48501 * 109.46720 * 5.00098 * 16 14 12 18 18 H 1.48500 * 109.46954 * 125.00109 * 16 14 12 19 19 H 1.48498 * 109.47291 * 245.00228 * 16 14 12 20 20 C 1.53001 * 117.50104 * 133.94528 * 8 7 2 21 21 C 1.53003 * 60.00050 * 252.51057 * 20 8 7 22 22 H 1.09006 * 109.47008 * 274.86214 * 1 2 3 23 23 H 1.09001 * 109.46973 * 34.86515 * 1 2 3 24 24 H 1.09000 * 109.47258 * 154.86274 * 1 2 3 25 25 H 1.08007 * 120.00621 * 0.02562 * 3 2 1 26 26 H 1.07999 * 120.00548 * 179.72778 * 4 3 2 27 27 H 1.08004 * 119.99803 * 179.97438 * 5 4 3 28 28 H 1.07999 * 119.99699 * 179.97438 * 6 5 4 29 29 H 1.08995 * 109.46971 * 60.00333 * 11 9 8 30 30 H 1.08998 * 109.46665 * 180.02562 * 11 9 8 31 31 H 1.08998 * 109.47045 * 300.00004 * 11 9 8 32 32 H 0.96997 * 119.99849 * 180.02562 * 15 14 12 33 33 H 1.08997 * 117.50120 * 359.97438 * 20 8 7 34 34 H 1.08998 * 117.50019 * 145.02885 * 20 8 7 35 35 H 1.08996 * 117.50103 * 252.51063 * 21 20 8 36 36 H 1.08997 * 117.51599 * 107.48124 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0062 5 6 4.2717 0.0000 -0.0062 6 6 3.5807 -1.1969 -0.0005 7 6 2.1981 -1.1969 0.0053 8 6 1.4447 -2.5020 0.0116 9 6 0.9148 -2.9515 1.3747 10 1 0.1854 -2.2273 1.7378 11 6 0.2479 -4.3215 1.2362 12 6 2.0581 -3.0458 2.3519 13 1 3.0723 -2.8947 2.0126 14 6 1.8096 -3.3250 3.6790 15 7 0.5844 -3.5903 4.0769 16 14 3.2129 -3.3266 4.9120 17 1 4.4614 -2.8829 4.2414 18 1 2.8933 -2.3993 6.0269 19 1 3.3997 -4.6990 5.4477 20 6 1.9067 -3.5892 -0.9607 21 6 0.6002 -2.8362 -1.2197 22 1 -0.3633 0.0871 1.0240 23 1 -0.3633 0.8432 -0.5875 24 1 -0.3634 -0.9303 -0.4365 25 1 1.6583 2.1327 0.0004 26 1 4.1204 2.1327 -0.0106 27 1 5.3517 0.0000 -0.0114 28 1 4.1207 -2.1322 -0.0009 29 1 0.9772 -5.0456 0.8732 30 1 -0.1300 -4.6415 2.2072 31 1 -0.5791 -4.2532 0.5294 32 1 0.4094 -3.7864 5.0106 33 1 2.7554 -3.3604 -1.6052 34 1 1.8333 -4.6250 -0.6293 35 1 -0.3325 -3.3766 -1.0587 36 1 0.5894 -2.1120 -2.0342 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259865240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:09 Heat of formation + Delta-G solvation = 36.054190 kcal Electronic energy + Delta-G solvation = -16343.106183 eV Core-core repulsion = 13985.379182 eV Total energy + Delta-G solvation = -2357.727001 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.48847 -36.89793 -33.01974 -32.12902 -30.16739 -29.47343 -26.47650 -25.08210 -23.47032 -21.91045 -21.11264 -20.54674 -18.01121 -16.27950 -15.68125 -15.10174 -14.58834 -14.36369 -14.07023 -13.30959 -13.11570 -12.76386 -12.54616 -12.04299 -11.73643 -11.45861 -11.21946 -11.08937 -10.97196 -10.67828 -10.57122 -10.51251 -10.22093 -10.07567 -9.63823 -9.32178 -9.25153 -8.45544 -8.26493 -8.13821 -7.84313 -5.93368 -3.96059 1.96430 2.01229 3.32939 3.41126 3.45849 4.35668 4.45579 4.62772 5.30189 5.38229 5.39433 5.46543 5.58475 5.73996 5.76241 5.81249 6.01444 6.12053 6.21414 6.27730 6.30865 6.40838 6.50092 6.68498 6.72040 6.79054 6.82895 6.97950 7.01759 7.09858 7.23663 7.36318 7.40774 7.63473 7.77767 8.00701 8.15117 8.51921 9.06860 9.67605 11.13849 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.020844 B = 0.011171 C = 0.009017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.016026 B = 2505.980791 C = 3104.399817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.078 4.078 3 C -0.127 4.127 4 C -0.135 4.135 5 C -0.133 4.133 6 C -0.101 4.101 7 C -0.007 4.007 8 C -0.057 4.057 9 C 0.084 3.916 10 H 0.034 0.966 11 C -0.139 4.139 12 C -0.497 4.497 13 H 0.057 0.943 14 C 0.060 3.940 15 N -0.893 5.893 16 Si 0.884 3.116 17 H -0.273 1.273 18 H -0.286 1.286 19 H -0.286 1.286 20 C -0.176 4.176 21 C -0.189 4.189 22 H 0.070 0.930 23 H 0.052 0.948 24 H 0.077 0.923 25 H 0.112 0.888 26 H 0.111 0.889 27 H 0.112 0.888 28 H 0.118 0.882 29 H 0.030 0.970 30 H 0.077 0.923 31 H 0.010 0.990 32 H 0.257 0.743 33 H 0.078 0.922 34 H 0.097 0.903 35 H 0.094 0.906 36 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.844 5.377 -8.811 10.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.078 4.078 3 C -0.146 4.146 4 C -0.153 4.153 5 C -0.151 4.151 6 C -0.119 4.119 7 C -0.007 4.007 8 C -0.057 4.057 9 C 0.066 3.934 10 H 0.052 0.948 11 C -0.197 4.197 12 C -0.535 4.535 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.533 5.533 16 Si 0.713 3.287 17 H -0.198 1.198 18 H -0.212 1.212 19 H -0.212 1.212 20 C -0.212 4.212 21 C -0.226 4.226 22 H 0.089 0.911 23 H 0.071 0.929 24 H 0.095 0.905 25 H 0.130 0.870 26 H 0.129 0.871 27 H 0.130 0.870 28 H 0.136 0.864 29 H 0.049 0.951 30 H 0.096 0.904 31 H 0.029 0.971 32 H 0.067 0.933 33 H 0.096 0.904 34 H 0.116 0.884 35 H 0.112 0.888 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 1.746 5.334 -8.649 10.311 hybrid contribution 0.891 0.006 0.903 1.268 sum 2.637 5.340 -7.747 9.771 Atomic orbital electron populations 1.20870 0.91660 1.02453 1.02327 1.19691 0.96032 0.92420 0.99687 1.20862 0.94150 0.97052 1.02491 1.20909 0.94273 0.97444 1.02704 1.20991 0.99147 0.92752 1.02181 1.20966 0.93934 0.97657 0.99358 1.18971 0.92754 0.92944 0.95981 1.20551 0.99765 0.91711 0.93701 1.18202 0.95304 0.93119 0.86801 0.94786 1.21950 0.97316 0.99286 1.01101 1.21142 0.93189 1.46760 0.92404 0.92468 1.24919 0.95286 0.95503 0.98341 1.69918 1.19036 1.48362 1.15981 0.86649 0.83016 0.77480 0.81580 1.19791 1.21212 1.21210 1.23022 0.96862 0.98333 1.03018 1.23088 0.95671 1.03768 1.00086 0.91133 0.92883 0.90470 0.86952 0.87104 0.86998 0.86410 0.95121 0.90401 0.97071 0.93277 0.90368 0.88427 0.88781 0.90253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.94 9.35 36.01 0.34 -1.61 16 2 C -0.08 -1.45 5.87 -104.62 -0.61 -2.06 16 3 C -0.13 -2.11 9.72 -39.58 -0.38 -2.50 16 4 C -0.14 -2.15 10.05 -39.58 -0.40 -2.54 16 5 C -0.13 -2.23 10.05 -39.58 -0.40 -2.62 16 6 C -0.10 -1.92 8.46 -39.58 -0.33 -2.26 16 7 C -0.01 -0.13 4.45 -104.63 -0.47 -0.60 16 8 C -0.06 -1.17 0.83 -155.66 -0.13 -1.30 16 9 C 0.08 2.05 2.39 -91.77 -0.22 1.83 16 10 H 0.03 0.92 7.84 -51.93 -0.41 0.51 16 11 C -0.14 -3.26 8.09 37.16 0.30 -2.96 16 12 C -0.50 -13.44 8.02 -34.44 -0.28 -13.71 16 13 H 0.06 1.56 6.80 -52.49 -0.36 1.20 16 14 C 0.06 1.66 5.36 -17.82 -0.10 1.57 16 15 N -0.89 -25.61 11.57 55.43 0.64 -24.97 16 16 Si 0.88 21.69 29.54 -169.99 -5.02 16.67 16 17 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 20 C -0.18 -3.21 9.13 -26.73 -0.24 -3.46 16 21 C -0.19 -3.31 7.54 -26.73 -0.20 -3.51 16 22 H 0.07 1.24 8.14 -51.93 -0.42 0.82 16 23 H 0.05 0.73 8.12 -51.93 -0.42 0.31 16 24 H 0.08 1.30 5.15 -51.93 -0.27 1.03 16 25 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 26 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 27 H 0.11 1.59 8.06 -52.48 -0.42 1.17 16 28 H 0.12 2.20 7.92 -52.49 -0.42 1.78 16 29 H 0.03 0.69 6.30 -51.93 -0.33 0.36 16 30 H 0.08 2.04 6.35 -51.93 -0.33 1.71 16 31 H 0.01 0.22 6.34 -51.93 -0.33 -0.11 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 33 H 0.08 1.32 8.00 -51.93 -0.42 0.90 16 34 H 0.10 1.83 6.14 -51.93 -0.32 1.51 16 35 H 0.09 1.62 6.36 -51.93 -0.33 1.29 16 36 H 0.08 1.28 8.07 -51.93 -0.42 0.86 16 LS Contribution 285.75 15.07 4.31 4.31 Total: -1.00 -28.55 285.75 -8.36 -36.91 By element: Atomic # 1 Polarization: 7.97 SS G_CDS: -5.16 Total: 2.81 kcal Atomic # 6 Polarization: -32.61 SS G_CDS: -3.12 Total: -35.73 kcal Atomic # 7 Polarization: -25.61 SS G_CDS: 0.64 Total: -24.97 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -28.55 -8.36 -36.91 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.965 kcal (2) G-P(sol) polarization free energy of solvation -28.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.911 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds