Wall clock time and date at job start Mon Mar 30 2020 03:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.38251 * 119.99657 * 2 1 4 4 C 1.38215 * 120.00066 * 180.29665 * 3 2 1 5 5 C 1.38267 * 119.99377 * 359.70273 * 4 3 2 6 6 C 1.38209 * 120.00062 * 0.02562 * 5 4 3 7 7 C 1.38204 * 119.99725 * 179.74730 * 2 1 3 8 8 C 1.50695 * 120.00621 * 359.97438 * 7 2 1 9 9 C 1.52998 * 115.55102 * 279.65352 * 8 7 2 10 10 H 1.09004 * 109.47074 * 63.22805 * 9 8 7 11 11 C 1.53006 * 109.47180 * 183.22720 * 9 8 7 12 12 C 1.50701 * 109.47413 * 303.23102 * 9 8 7 13 13 H 1.08002 * 119.99233 * 354.56517 * 12 9 8 14 14 C 1.37871 * 120.00455 * 174.56545 * 12 9 8 15 15 N 1.31522 * 119.99808 * 4.18778 * 14 12 9 16 16 Si 1.86802 * 120.00308 * 184.18751 * 14 12 9 17 17 H 1.48501 * 109.46720 * 5.00098 * 16 14 12 18 18 H 1.48500 * 109.46954 * 125.00109 * 16 14 12 19 19 H 1.48498 * 109.47291 * 245.00228 * 16 14 12 20 20 C 1.53001 * 117.50104 * 133.94528 * 8 7 2 21 21 C 1.53003 * 60.00050 * 252.51057 * 20 8 7 22 22 H 1.09006 * 109.47008 * 274.86214 * 1 2 3 23 23 H 1.09001 * 109.46973 * 34.86515 * 1 2 3 24 24 H 1.09000 * 109.47258 * 154.86274 * 1 2 3 25 25 H 1.08007 * 120.00621 * 0.02562 * 3 2 1 26 26 H 1.07999 * 120.00548 * 179.72778 * 4 3 2 27 27 H 1.08004 * 119.99803 * 179.97438 * 5 4 3 28 28 H 1.07999 * 119.99699 * 179.97438 * 6 5 4 29 29 H 1.08995 * 109.46971 * 60.00333 * 11 9 8 30 30 H 1.08998 * 109.46665 * 180.02562 * 11 9 8 31 31 H 1.08998 * 109.47045 * 300.00004 * 11 9 8 32 32 H 0.96997 * 119.99849 * 180.02562 * 15 14 12 33 33 H 1.08997 * 117.50120 * 359.97438 * 20 8 7 34 34 H 1.08998 * 117.50019 * 145.02885 * 20 8 7 35 35 H 1.08996 * 117.50103 * 252.51063 * 21 20 8 36 36 H 1.08997 * 117.51599 * 107.48124 * 21 20 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1974 -0.0062 5 6 4.2717 0.0000 -0.0062 6 6 3.5807 -1.1969 -0.0005 7 6 2.1981 -1.1969 0.0053 8 6 1.4447 -2.5020 0.0116 9 6 0.9148 -2.9515 1.3747 10 1 0.1854 -2.2273 1.7378 11 6 0.2479 -4.3215 1.2362 12 6 2.0581 -3.0458 2.3519 13 1 3.0723 -2.8947 2.0126 14 6 1.8096 -3.3250 3.6790 15 7 0.5844 -3.5903 4.0769 16 14 3.2129 -3.3266 4.9120 17 1 4.4614 -2.8829 4.2414 18 1 2.8933 -2.3993 6.0269 19 1 3.3997 -4.6990 5.4477 20 6 1.9067 -3.5892 -0.9607 21 6 0.6002 -2.8362 -1.2197 22 1 -0.3633 0.0871 1.0240 23 1 -0.3633 0.8432 -0.5875 24 1 -0.3634 -0.9303 -0.4365 25 1 1.6583 2.1327 0.0004 26 1 4.1204 2.1327 -0.0106 27 1 5.3517 0.0000 -0.0114 28 1 4.1207 -2.1322 -0.0009 29 1 0.9772 -5.0456 0.8732 30 1 -0.1300 -4.6415 2.2072 31 1 -0.5791 -4.2532 0.5294 32 1 0.4094 -3.7864 5.0106 33 1 2.7554 -3.3604 -1.6052 34 1 1.8333 -4.6250 -0.6293 35 1 -0.3325 -3.3766 -1.0587 36 1 0.5894 -2.1120 -2.0342 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259865240.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:08 Heat of formation + Delta-G solvation = 23.068283 kcal Electronic energy + Delta-G solvation = -16343.669294 eV Core-core repulsion = 13985.379182 eV Total energy + Delta-G solvation = -2358.290112 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.90588 -38.37401 -35.01640 -33.44400 -31.64731 -31.27805 -27.82698 -27.04758 -25.08583 -23.38614 -22.61335 -21.94553 -19.62997 -18.18151 -17.31998 -16.68511 -16.05691 -15.92388 -15.56773 -14.78040 -14.69959 -14.45985 -13.85323 -13.81079 -13.10532 -12.95332 -12.89493 -12.77696 -12.65460 -12.50515 -12.18872 -12.16740 -11.89415 -11.79910 -11.27804 -11.05747 -10.88549 -10.40443 -10.15263 -9.49125 -9.23219 -8.04545 -6.12676 0.63331 0.67732 1.36710 1.39740 1.49940 2.44476 3.01143 3.12085 3.25465 3.91287 4.10745 4.17007 4.27133 4.31814 4.37936 4.52050 4.66061 4.75440 4.80770 4.89909 4.92693 5.02486 5.03619 5.09077 5.14729 5.28596 5.41528 5.44198 5.47109 5.52627 5.67430 5.72432 5.82060 5.94603 6.06353 6.15714 6.33460 6.47502 6.97285 7.53343 9.01412 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.020844 B = 0.011171 C = 0.009017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1343.016026 B = 2505.980791 C = 3104.399817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.099 4.099 3 C -0.131 4.131 4 C -0.133 4.133 5 C -0.137 4.137 6 C -0.123 4.123 7 C -0.032 4.032 8 C -0.076 4.076 9 C 0.087 3.913 10 H -0.001 1.001 11 C -0.129 4.129 12 C -0.502 4.502 13 H 0.051 0.949 14 C 0.011 3.989 15 N -0.921 5.921 16 Si 0.939 3.061 17 H -0.270 1.270 18 H -0.286 1.286 19 H -0.281 1.281 20 C -0.171 4.171 21 C -0.167 4.167 22 H 0.051 0.949 23 H 0.082 0.918 24 H 0.070 0.930 25 H 0.140 0.860 26 H 0.146 0.854 27 H 0.137 0.863 28 H 0.110 0.890 29 H 0.034 0.966 30 H 0.046 0.954 31 H 0.033 0.967 32 H 0.257 0.743 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.096 0.904 36 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.834 6.703 -9.949 12.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.099 4.099 3 C -0.148 4.148 4 C -0.150 4.150 5 C -0.155 4.155 6 C -0.141 4.141 7 C -0.032 4.032 8 C -0.076 4.076 9 C 0.068 3.932 10 H 0.017 0.983 11 C -0.187 4.187 12 C -0.540 4.540 13 H 0.069 0.931 14 C -0.187 4.187 15 N -0.562 5.562 16 Si 0.766 3.234 17 H -0.194 1.194 18 H -0.212 1.212 19 H -0.207 1.207 20 C -0.207 4.207 21 C -0.203 4.203 22 H 0.070 0.930 23 H 0.101 0.899 24 H 0.089 0.911 25 H 0.157 0.843 26 H 0.163 0.837 27 H 0.154 0.846 28 H 0.128 0.872 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.066 0.934 33 H 0.111 0.889 34 H 0.108 0.892 35 H 0.114 0.886 36 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 2.741 6.656 -9.796 12.157 hybrid contribution 0.593 -0.361 1.233 1.415 sum 3.334 6.296 -8.562 11.139 Atomic orbital electron populations 1.20837 0.90999 1.03440 1.01629 1.19992 0.96868 0.92838 1.00220 1.21245 0.94826 0.97435 1.01330 1.21341 0.94261 0.98511 1.00921 1.21330 1.00544 0.92346 1.01243 1.21085 0.93925 0.98438 1.00686 1.19079 0.93278 0.93122 0.97720 1.20266 1.01878 0.93069 0.92370 1.18012 0.93797 0.92529 0.88830 0.98265 1.21790 0.98038 0.98926 0.99921 1.21439 0.93714 1.45709 0.93175 0.93100 1.25610 0.97252 0.95699 1.00105 1.70041 1.20548 1.49462 1.16128 0.85785 0.80616 0.77502 0.79492 1.19399 1.21178 1.20725 1.23041 0.98012 0.97361 1.02317 1.23097 0.95198 1.03235 0.98812 0.92983 0.89891 0.91119 0.84250 0.83665 0.84552 0.87183 0.94702 0.93542 0.94782 0.93421 0.88871 0.89157 0.88592 0.88357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.65 9.35 71.24 0.67 -2.98 16 2 C -0.10 -3.54 5.87 -19.87 -0.12 -3.66 16 3 C -0.13 -3.97 9.72 22.27 0.22 -3.76 16 4 C -0.13 -3.78 10.05 22.27 0.22 -3.55 16 5 C -0.14 -4.28 10.05 22.27 0.22 -4.06 16 6 C -0.12 -4.58 8.46 22.27 0.19 -4.39 16 7 C -0.03 -1.25 4.45 -19.87 -0.09 -1.34 16 8 C -0.08 -3.07 0.83 -52.93 -0.04 -3.11 16 9 C 0.09 4.30 2.39 -11.54 -0.03 4.28 16 10 H 0.00 -0.04 7.84 -2.39 -0.02 -0.06 16 11 C -0.13 -6.15 8.09 71.98 0.58 -5.57 16 12 C -0.50 -27.63 8.02 25.60 0.21 -27.43 16 13 H 0.05 2.81 6.80 -2.91 -0.02 2.79 16 14 C 0.01 0.61 5.36 84.65 0.45 1.06 16 15 N -0.92 -54.09 11.57 21.45 0.25 -53.84 16 16 Si 0.94 44.94 29.54 68.60 2.03 46.97 16 17 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 18 H -0.29 -13.56 7.11 99.48 0.71 -12.85 16 19 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 20 C -0.17 -6.07 9.13 30.60 0.28 -5.79 16 21 C -0.17 -5.59 7.54 30.60 0.23 -5.36 16 22 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 23 H 0.08 2.11 8.12 -2.39 -0.02 2.09 16 24 H 0.07 2.33 5.15 -2.39 -0.01 2.32 16 25 H 0.14 3.39 8.06 -2.91 -0.02 3.37 16 26 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 27 H 0.14 3.48 8.06 -2.91 -0.02 3.45 16 28 H 0.11 4.11 7.92 -2.91 -0.02 4.08 16 29 H 0.03 1.58 6.30 -2.39 -0.02 1.56 16 30 H 0.05 2.49 6.35 -2.39 -0.02 2.47 16 31 H 0.03 1.41 6.34 -2.39 -0.02 1.39 16 32 H 0.26 14.44 8.31 -92.71 -0.77 13.67 16 33 H 0.09 3.01 8.00 -2.39 -0.02 2.99 16 34 H 0.09 3.32 6.14 -2.39 -0.01 3.30 16 35 H 0.10 3.16 6.36 -2.39 -0.02 3.14 16 36 H 0.10 2.93 8.07 -2.39 -0.02 2.91 16 Total: -1.00 -61.67 285.75 6.32 -55.35 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: 1.05 Total: 17.18 kcal Atomic # 6 Polarization: -68.66 SS G_CDS: 2.99 Total: -65.67 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: 0.25 Total: -53.84 kcal Atomic # 14 Polarization: 44.94 SS G_CDS: 2.03 Total: 46.97 kcal Total: -61.67 6.32 -55.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259865240.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.422 kcal (2) G-P(sol) polarization free energy of solvation -61.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.747 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.353 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds