Wall clock time and date at job start Mon Mar 30 2020 03:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86793 * 120.00489 * 2 1 4 4 H 1.48504 * 109.47367 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47030 * 299.99729 * 3 2 1 6 6 H 1.48503 * 109.47405 * 59.99843 * 3 2 1 7 7 C 1.39948 * 119.99584 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00106 * 197.86811 * 7 2 1 9 9 C 1.41397 * 119.99863 * 17.87231 * 7 2 1 10 10 C 1.40707 * 120.24553 * 24.37899 * 9 7 2 11 11 C 1.37624 * 119.74716 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24236 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.74644 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46974 * 90.00044 * 13 12 11 15 15 C 1.55238 * 110.57946 * 289.87388 * 14 13 12 16 16 C 1.54898 * 102.58794 * 203.33864 * 15 14 13 17 17 C 1.54264 * 104.30838 * 37.93470 * 16 15 14 18 18 C 1.53876 * 106.60291 * 336.31993 * 17 16 15 19 19 C 1.38631 * 120.50731 * 0.25766 * 12 11 10 20 20 C 1.37615 * 120.24287 * 359.43940 * 19 12 11 21 21 H 0.97003 * 119.99492 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.13073 * 0.02562 * 10 9 7 23 23 H 1.07996 * 119.87998 * 179.97438 * 11 10 9 24 24 H 1.09003 * 109.46941 * 330.00518 * 13 12 11 25 25 H 1.08997 * 109.47524 * 210.00479 * 13 12 11 26 26 H 1.08994 * 110.43724 * 52.45753 * 14 13 12 27 27 H 1.09002 * 110.89931 * 85.05314 * 15 14 13 28 28 H 1.09003 * 110.77235 * 321.56885 * 15 14 13 29 29 H 1.09002 * 110.48414 * 279.18920 * 16 15 14 30 30 H 1.08996 * 110.48480 * 156.67877 * 16 15 14 31 31 H 1.08993 * 110.03362 * 95.61102 * 17 16 15 32 32 H 1.09004 * 110.02801 * 216.99008 * 17 16 15 33 33 H 1.09001 * 110.02709 * 119.28624 * 18 17 16 34 34 H 1.08992 * 110.03765 * 240.67010 * 18 17 16 35 35 H 1.07999 * 119.87900 * 179.70417 * 19 12 11 36 36 H 1.08005 * 120.12725 * 180.27606 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7024 1.3462 0.0006 5 1 1.8837 2.3963 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0488 -1.2346 0.2875 9 6 1.3520 -2.4071 -0.3747 10 6 0.2209 -2.3625 -1.2105 11 6 -0.4099 -3.5319 -1.5690 12 6 0.0649 -4.7506 -1.1093 13 6 -0.6349 -6.0243 -1.5083 14 6 -0.0194 -6.5605 -2.8023 15 6 -0.3880 -5.6464 -4.0016 16 6 -0.2397 -6.6014 -5.2121 17 6 -0.7729 -7.9545 -4.6978 18 6 -0.6328 -7.9286 -3.1656 19 6 1.1749 -4.8062 -0.2806 20 6 1.8251 -3.6499 0.0855 21 1 -0.4849 0.8401 0.0004 22 1 -0.1508 -1.4141 -1.5694 23 1 -1.2784 -3.5001 -2.2100 24 1 -1.6944 -5.8227 -1.6663 25 1 -0.5201 -6.7652 -0.7171 26 1 1.0631 -6.6419 -2.7037 27 1 0.3072 -4.8106 -4.0816 28 1 -1.4143 -5.2895 -3.9146 29 1 0.8072 -6.6893 -5.5026 30 1 -0.8392 -6.2492 -6.0515 31 1 -1.8204 -8.0727 -4.9750 32 1 -0.1824 -8.7709 -5.1137 33 1 -1.6124 -8.0342 -2.6993 34 1 0.0255 -8.7328 -2.8372 35 1 1.5332 -5.7608 0.0754 36 1 2.6923 -3.6958 0.7276 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259890233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:04 Heat of formation + Delta-G solvation = -19.073591 kcal Electronic energy + Delta-G solvation = -15474.976773 eV Core-core repulsion = 13114.859252 eV Total energy + Delta-G solvation = -2360.117521 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -38.44493 -37.05780 -33.89096 -31.69460 -29.31898 -28.80160 -28.33276 -25.83120 -23.28666 -21.08657 -20.16868 -19.86391 -19.25102 -17.24649 -15.67031 -15.24111 -14.70690 -14.18446 -13.82184 -13.69531 -13.10412 -12.83126 -12.53571 -11.90006 -11.65346 -11.57940 -11.46114 -11.08853 -11.02767 -10.77136 -10.75029 -10.48338 -10.33281 -10.20478 -10.11253 -9.99618 -9.43967 -9.30620 -9.05445 -7.39000 -7.21067 -6.71503 -4.29116 2.79747 3.08949 3.12021 3.14777 3.23397 3.96338 4.63186 4.87025 4.92063 4.99527 5.57935 5.64547 5.70685 5.80615 5.85226 5.93377 5.98853 6.04858 6.08330 6.23779 6.29007 6.41159 6.47858 6.51416 6.53409 6.58470 6.68007 6.87252 7.01159 7.12863 7.35790 7.43902 7.67205 7.94178 8.10892 8.20406 8.35870 8.69838 8.95048 9.03670 10.23193 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.047218 B = 0.005486 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.853364 B = 5102.542465 C = 5328.503183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.796 5.796 2 C 0.076 3.924 3 Si 0.905 3.095 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.275 1.275 7 C -0.465 4.465 8 H 0.076 0.924 9 C 0.107 3.893 10 C -0.165 4.165 11 C -0.095 4.095 12 C -0.206 4.206 13 C -0.048 4.048 14 C -0.083 4.083 15 C -0.113 4.113 16 C -0.127 4.127 17 C -0.123 4.123 18 C -0.123 4.123 19 C -0.091 4.091 20 C -0.226 4.226 21 H 0.279 0.721 22 H 0.116 0.884 23 H 0.085 0.915 24 H 0.052 0.948 25 H 0.050 0.950 26 H 0.070 0.930 27 H 0.069 0.931 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.056 0.944 35 H 0.084 0.916 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.568 -8.364 -6.233 10.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.141 4.141 3 Si 0.730 3.270 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.201 1.201 7 C -0.495 4.495 8 H 0.094 0.906 9 C 0.105 3.895 10 C -0.184 4.184 11 C -0.113 4.113 12 C -0.207 4.207 13 C -0.085 4.085 14 C -0.102 4.102 15 C -0.151 4.151 16 C -0.165 4.165 17 C -0.161 4.161 18 C -0.161 4.161 19 C -0.109 4.109 20 C -0.245 4.245 21 H 0.089 0.911 22 H 0.134 0.866 23 H 0.103 0.897 24 H 0.070 0.930 25 H 0.068 0.932 26 H 0.088 0.912 27 H 0.088 0.912 28 H 0.081 0.919 29 H 0.079 0.921 30 H 0.077 0.923 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.103 0.897 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.772 -8.206 -6.215 10.445 hybrid contribution 0.327 0.811 0.096 0.880 sum -1.444 -7.395 -6.120 9.707 Atomic orbital electron populations 1.69845 1.07564 1.28935 1.35807 1.25887 0.94683 1.01210 0.92310 0.86314 0.81042 0.81162 0.78501 1.18447 1.19750 1.20059 1.19604 0.98112 0.91347 1.40465 0.90577 1.17611 0.91236 0.91972 0.88675 1.21312 0.99342 0.96748 1.01032 1.20522 0.98501 0.92689 0.99616 1.19051 1.00919 0.93290 1.07419 1.20269 0.97891 0.95157 0.95178 1.22068 0.99904 0.93107 0.95109 1.22560 1.01460 0.97578 0.93453 1.22384 1.00573 0.95403 0.98114 1.22117 1.00446 0.97469 0.96033 1.22250 1.00716 0.97865 0.95237 1.20370 0.95910 0.96246 0.98355 1.20957 1.03636 0.93026 1.06901 0.91057 0.86610 0.89713 0.92975 0.93154 0.91188 0.91247 0.91856 0.92060 0.92327 0.92397 0.92546 0.92087 0.92480 0.89745 0.89259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.93 10.95 55.55 0.61 -20.32 16 2 C 0.08 1.95 5.14 -17.34 -0.09 1.86 16 3 Si 0.91 18.93 29.59 -169.99 -5.03 13.90 16 4 H -0.26 -5.40 7.11 56.52 0.40 -5.00 16 5 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 6 H -0.28 -5.65 7.11 56.52 0.40 -5.25 16 7 C -0.47 -12.61 9.05 -37.74 -0.34 -12.95 16 8 H 0.08 1.99 7.91 -52.49 -0.41 1.58 16 9 C 0.11 2.91 5.58 -106.83 -0.60 2.32 16 10 C -0.16 -4.34 8.70 -38.87 -0.34 -4.68 16 11 C -0.09 -2.21 9.05 -39.66 -0.36 -2.57 16 12 C -0.21 -4.46 4.97 -104.33 -0.52 -4.98 16 13 C -0.05 -0.83 4.71 -27.88 -0.13 -0.96 16 14 C -0.08 -1.29 2.84 -88.77 -0.25 -1.54 16 15 C -0.11 -1.71 5.51 -24.54 -0.14 -1.84 16 16 C -0.13 -1.59 6.82 -25.07 -0.17 -1.76 16 17 C -0.12 -1.42 6.80 -25.61 -0.17 -1.60 16 18 C -0.12 -1.57 6.37 -25.61 -0.16 -1.73 16 19 C -0.09 -2.06 9.67 -39.66 -0.38 -2.44 16 20 C -0.23 -5.66 9.80 -38.87 -0.38 -6.04 16 21 H 0.28 6.64 8.30 -40.82 -0.34 6.30 16 22 H 0.12 3.15 6.16 -52.49 -0.32 2.83 16 23 H 0.08 1.81 8.06 -52.49 -0.42 1.38 16 24 H 0.05 0.89 7.97 -51.93 -0.41 0.47 16 25 H 0.05 0.84 8.08 -51.93 -0.42 0.42 16 26 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.74 16 28 H 0.06 0.96 7.98 -51.93 -0.41 0.54 16 29 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.06 0.75 7.84 -51.93 -0.41 0.35 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.08 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.09 2.12 8.06 -52.48 -0.42 1.70 16 LS Contribution 292.26 15.07 4.40 4.40 Total: -1.00 -27.04 292.26 -9.81 -36.85 By element: Atomic # 1 Polarization: 9.85 SS G_CDS: -5.76 Total: 4.09 kcal Atomic # 6 Polarization: -34.89 SS G_CDS: -4.03 Total: -38.92 kcal Atomic # 7 Polarization: -20.93 SS G_CDS: 0.61 Total: -20.32 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 4.40 Total: 4.40 kcal Total: -27.04 -9.81 -36.85 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259890233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.777 kcal (2) G-P(sol) polarization free energy of solvation -27.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.268 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.806 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.850 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds