Wall clock time and date at job start Mon Mar 30 2020 03:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30825 * 1 3 3 Si 1.86793 * 120.00489 * 2 1 4 4 H 1.48504 * 109.47367 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47030 * 299.99729 * 3 2 1 6 6 H 1.48503 * 109.47405 * 59.99843 * 3 2 1 7 7 C 1.39948 * 119.99584 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00106 * 197.86811 * 7 2 1 9 9 C 1.41397 * 119.99863 * 17.87231 * 7 2 1 10 10 C 1.40707 * 120.24553 * 24.37899 * 9 7 2 11 11 C 1.37624 * 119.74716 * 180.02562 * 10 9 7 12 12 C 1.38635 * 120.24236 * 0.02562 * 11 10 9 13 13 C 1.50707 * 119.74644 * 179.97438 * 12 11 10 14 14 C 1.52999 * 109.46974 * 90.00044 * 13 12 11 15 15 C 1.55238 * 110.57946 * 289.87388 * 14 13 12 16 16 C 1.54898 * 102.58794 * 203.33864 * 15 14 13 17 17 C 1.54264 * 104.30838 * 37.93470 * 16 15 14 18 18 C 1.53876 * 106.60291 * 336.31993 * 17 16 15 19 19 C 1.38631 * 120.50731 * 0.25766 * 12 11 10 20 20 C 1.37615 * 120.24287 * 359.43940 * 19 12 11 21 21 H 0.97003 * 119.99492 * 359.97438 * 1 2 3 22 22 H 1.07996 * 120.13073 * 0.02562 * 10 9 7 23 23 H 1.07996 * 119.87998 * 179.97438 * 11 10 9 24 24 H 1.09003 * 109.46941 * 330.00518 * 13 12 11 25 25 H 1.08997 * 109.47524 * 210.00479 * 13 12 11 26 26 H 1.08994 * 110.43724 * 52.45753 * 14 13 12 27 27 H 1.09002 * 110.89931 * 85.05314 * 15 14 13 28 28 H 1.09003 * 110.77235 * 321.56885 * 15 14 13 29 29 H 1.09002 * 110.48414 * 279.18920 * 16 15 14 30 30 H 1.08996 * 110.48480 * 156.67877 * 16 15 14 31 31 H 1.08993 * 110.03362 * 95.61102 * 17 16 15 32 32 H 1.09004 * 110.02801 * 216.99008 * 17 16 15 33 33 H 1.09001 * 110.02709 * 119.28624 * 18 17 16 34 34 H 1.08992 * 110.03765 * 240.67010 * 18 17 16 35 35 H 1.07999 * 119.87900 * 179.70417 * 19 12 11 36 36 H 1.08005 * 120.12725 * 180.27606 * 20 19 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3082 0.0000 0.0000 3 14 2.2423 1.6176 0.0000 4 1 3.7024 1.3462 0.0006 5 1 1.8837 2.3963 -1.2125 6 1 1.8837 2.3964 1.2125 7 6 2.0079 -1.2120 0.0005 8 1 3.0488 -1.2346 0.2875 9 6 1.3520 -2.4071 -0.3747 10 6 0.2209 -2.3625 -1.2105 11 6 -0.4099 -3.5319 -1.5690 12 6 0.0649 -4.7506 -1.1093 13 6 -0.6349 -6.0243 -1.5083 14 6 -0.0194 -6.5605 -2.8023 15 6 -0.3880 -5.6464 -4.0016 16 6 -0.2397 -6.6014 -5.2121 17 6 -0.7729 -7.9545 -4.6978 18 6 -0.6328 -7.9286 -3.1656 19 6 1.1749 -4.8062 -0.2806 20 6 1.8251 -3.6499 0.0855 21 1 -0.4849 0.8401 0.0004 22 1 -0.1508 -1.4141 -1.5694 23 1 -1.2784 -3.5001 -2.2100 24 1 -1.6944 -5.8227 -1.6663 25 1 -0.5201 -6.7652 -0.7171 26 1 1.0631 -6.6419 -2.7037 27 1 0.3072 -4.8106 -4.0816 28 1 -1.4143 -5.2895 -3.9146 29 1 0.8072 -6.6893 -5.5026 30 1 -0.8392 -6.2492 -6.0515 31 1 -1.8204 -8.0727 -4.9750 32 1 -0.1824 -8.7709 -5.1137 33 1 -1.6124 -8.0342 -2.6993 34 1 0.0255 -8.7328 -2.8372 35 1 1.5332 -5.7608 0.0754 36 1 2.6923 -3.6958 0.7276 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259890233.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:04 Heat of formation + Delta-G solvation = -30.242228 kcal Electronic energy + Delta-G solvation = -15475.461081 eV Core-core repulsion = 13114.859252 eV Total energy + Delta-G solvation = -2360.601829 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.93186 -38.58836 -35.72922 -33.29956 -31.19487 -30.43291 -29.43222 -27.46181 -24.90117 -22.93352 -21.77941 -21.09795 -20.49880 -19.20621 -17.17629 -16.81625 -15.90652 -15.76500 -15.49389 -15.45094 -14.34417 -14.26274 -14.10857 -13.77979 -13.35396 -13.17489 -13.03786 -12.73472 -12.39643 -12.20867 -12.00389 -11.84203 -11.72863 -11.59154 -11.37163 -11.25595 -11.12013 -11.08109 -10.93197 -9.32348 -9.13211 -8.62204 -6.30814 0.98720 1.16052 1.36875 1.50353 1.52697 2.20951 2.73303 3.70171 3.80386 3.87210 3.98940 4.36995 4.42931 4.54510 4.63005 4.67015 4.73390 4.80295 4.84389 4.95686 4.98844 5.07178 5.15336 5.17609 5.19594 5.22194 5.34608 5.41387 5.45148 5.49442 5.58719 5.65522 5.74533 6.03775 6.12846 6.30941 6.42196 6.73423 6.96470 7.07077 8.35083 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.047218 B = 0.005486 C = 0.005253 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 592.853364 B = 5102.542465 C = 5328.503183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.035 3.965 3 Si 0.981 3.019 4 H -0.259 1.259 5 H -0.264 1.264 6 H -0.265 1.265 7 C -0.506 4.506 8 H 0.071 0.929 9 C 0.073 3.927 10 C -0.190 4.190 11 C -0.097 4.097 12 C -0.192 4.192 13 C -0.045 4.045 14 C -0.083 4.083 15 C -0.118 4.118 16 C -0.124 4.124 17 C -0.119 4.119 18 C -0.118 4.118 19 C -0.095 4.095 20 C -0.243 4.243 21 H 0.287 0.713 22 H 0.097 0.903 23 H 0.102 0.898 24 H 0.060 0.940 25 H 0.065 0.935 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.068 0.932 34 H 0.068 0.932 35 H 0.115 0.885 36 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.994 -9.861 -6.969 12.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.456 5.456 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.183 1.183 5 H -0.188 1.188 6 H -0.190 1.190 7 C -0.536 4.536 8 H 0.090 0.910 9 C 0.071 3.929 10 C -0.209 4.209 11 C -0.116 4.116 12 C -0.193 4.193 13 C -0.082 4.082 14 C -0.101 4.101 15 C -0.155 4.155 16 C -0.161 4.161 17 C -0.157 4.157 18 C -0.155 4.155 19 C -0.113 4.113 20 C -0.263 4.263 21 H 0.097 0.903 22 H 0.115 0.885 23 H 0.120 0.880 24 H 0.079 0.921 25 H 0.084 0.916 26 H 0.076 0.924 27 H 0.061 0.939 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.133 0.867 36 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.203 -9.725 -6.952 12.155 hybrid contribution 0.409 1.147 0.312 1.257 sum -1.794 -8.578 -6.640 10.995 Atomic orbital electron populations 1.69895 1.09011 1.30322 1.36365 1.26738 0.95476 1.04454 0.91247 0.85181 0.79377 0.76267 0.78989 1.18286 1.18824 1.18955 1.19837 0.98253 0.92754 1.42748 0.91038 1.17959 0.92195 0.93049 0.89709 1.21286 1.00240 0.97141 1.02268 1.20751 0.98766 0.92520 0.99529 1.19550 0.99984 0.94615 1.05176 1.20323 0.97946 0.93193 0.96772 1.22001 0.99194 0.94975 0.93942 1.22552 1.00560 0.97375 0.95034 1.22367 1.01059 0.95409 0.97310 1.22113 1.01483 0.97070 0.95017 1.22207 1.01060 0.96032 0.96239 1.20729 0.95819 0.96720 0.98026 1.21175 1.04256 0.93420 1.07401 0.90271 0.88467 0.87959 0.92102 0.91636 0.92434 0.93929 0.91981 0.92010 0.91174 0.91181 0.91012 0.91323 0.91342 0.86739 0.88906 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -44.98 10.95 21.83 0.24 -44.74 16 2 C 0.03 1.83 5.14 85.26 0.44 2.27 16 3 Si 0.98 39.52 29.59 68.60 2.03 41.55 16 4 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 5 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 6 H -0.26 -10.14 7.11 99.48 0.71 -9.44 16 7 C -0.51 -28.56 9.05 23.46 0.21 -28.35 16 8 H 0.07 3.92 7.91 -2.91 -0.02 3.89 16 9 C 0.07 4.11 5.58 -21.29 -0.12 4.00 16 10 C -0.19 -10.36 8.70 22.73 0.20 -10.16 16 11 C -0.10 -4.58 9.05 22.22 0.20 -4.38 16 12 C -0.19 -8.16 4.97 -19.67 -0.10 -8.26 16 13 C -0.05 -1.47 4.71 29.85 0.14 -1.33 16 14 C -0.08 -2.36 2.84 -9.60 -0.03 -2.39 16 15 C -0.12 -3.39 5.51 32.01 0.18 -3.21 16 16 C -0.12 -2.80 6.82 31.67 0.22 -2.59 16 17 C -0.12 -2.32 6.80 31.32 0.21 -2.11 16 18 C -0.12 -2.58 6.37 31.32 0.20 -2.38 16 19 C -0.09 -4.24 9.67 22.22 0.21 -4.03 16 20 C -0.24 -12.45 9.80 22.73 0.22 -12.22 16 21 H 0.29 13.98 8.30 -92.71 -0.77 13.21 16 22 H 0.10 5.57 6.16 -2.91 -0.02 5.55 16 23 H 0.10 4.35 8.06 -2.91 -0.02 4.32 16 24 H 0.06 1.90 7.97 -2.39 -0.02 1.88 16 25 H 0.07 1.96 8.08 -2.39 -0.02 1.94 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 1.78 7.98 -2.39 -0.02 1.76 16 29 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 30 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.07 1.21 8.14 -2.38 -0.02 1.19 16 33 H 0.07 1.42 7.84 -2.39 -0.02 1.40 16 34 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 35 H 0.11 4.37 8.06 -2.91 -0.02 4.35 16 36 H 0.09 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -59.74 292.26 5.49 -54.26 By element: Atomic # 1 Polarization: 23.06 SS G_CDS: 1.03 Total: 24.09 kcal Atomic # 6 Polarization: -77.34 SS G_CDS: 2.19 Total: -75.15 kcal Atomic # 7 Polarization: -44.98 SS G_CDS: 0.24 Total: -44.74 kcal Atomic # 14 Polarization: 39.52 SS G_CDS: 2.03 Total: 41.55 kcal Total: -59.74 5.49 -54.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259890233.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.016 kcal (2) G-P(sol) polarization free energy of solvation -59.745 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.259 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds