Wall clock time and date at job start Mon Mar 30 2020 03:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38262 * 120.11292 * 2 1 4 4 C 1.37926 * 119.77726 * 179.89299 * 3 2 1 5 5 C 1.50699 * 119.73505 * 180.02562 * 4 3 2 6 6 C 1.38921 * 120.54028 * 0.03299 * 4 3 2 7 7 C 1.37653 * 119.68088 * 0.20233 * 6 4 3 8 8 C 1.37929 * 120.11803 * 180.02562 * 2 1 3 9 9 C 1.50639 * 122.56614 * 179.32647 * 7 6 4 10 10 C 1.52736 * 110.57428 * 17.83294 * 9 7 6 11 11 H 1.09007 * 109.71640 * 68.58923 * 10 9 7 12 12 C 1.50701 * 109.68584 * 189.12602 * 10 9 7 13 13 H 1.08002 * 119.99761 * 118.91497 * 12 10 9 14 14 C 1.37871 * 119.99694 * 299.20060 * 12 10 9 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 10 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 10 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 C 1.53327 * 108.37821 * 308.85059 * 10 9 7 21 21 C 1.50635 * 117.75262 * 180.25440 * 6 4 3 22 22 H 1.09001 * 109.46597 * 269.97067 * 1 2 3 23 23 H 1.08993 * 109.46996 * 29.97516 * 1 2 3 24 24 H 1.09002 * 109.46567 * 149.97624 * 1 2 3 25 25 H 1.08005 * 120.11528 * 359.91805 * 3 2 1 26 26 H 1.08994 * 109.47414 * 269.99641 * 5 4 3 27 27 H 1.09007 * 109.46602 * 29.99242 * 5 4 3 28 28 H 1.08995 * 109.47384 * 149.98844 * 5 4 3 29 29 H 1.08002 * 119.72837 * 359.97438 * 8 2 1 30 30 H 1.08996 * 109.24800 * 257.55764 * 9 7 6 31 31 H 1.09000 * 109.26043 * 138.11527 * 9 7 6 32 32 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 33 33 H 1.08999 * 109.67959 * 189.59287 * 20 10 9 34 34 H 1.09003 * 109.67696 * 310.10087 * 20 10 9 35 35 H 1.08996 * 109.25347 * 77.38286 * 21 6 4 36 36 H 1.09000 * 109.24915 * 317.95768 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2007 1.1960 0.0000 4 6 3.5800 1.1879 0.0022 5 6 4.3351 2.4921 0.0028 6 6 4.2789 -0.0127 0.0038 7 6 3.5882 -1.2034 -0.0011 8 6 2.1992 -1.1931 -0.0005 9 6 4.2796 -2.5417 -0.0147 10 6 5.7377 -2.3970 0.4163 11 1 5.7845 -2.1343 1.4732 12 6 6.4672 -3.6949 0.1833 13 1 7.3073 -3.7280 -0.4945 14 6 6.0582 -4.8413 0.8309 15 7 5.0351 -4.8010 1.6563 16 14 6.9575 -6.4519 0.5362 17 1 8.0640 -6.2315 -0.4293 18 1 7.5123 -6.9512 1.8200 19 1 6.0108 -7.4535 -0.0168 20 6 6.3813 -1.2854 -0.4211 21 6 5.7838 0.0518 0.0121 22 1 -0.3632 -0.0005 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3632 -0.8898 -0.5142 25 1 1.6644 2.1335 -0.0013 26 1 4.5189 2.8060 -1.0246 27 1 3.7459 3.2527 0.5153 28 1 5.2864 2.3609 0.5184 29 1 1.6567 -2.1270 -0.0005 30 1 4.2420 -2.9553 -1.0224 31 1 3.7678 -3.2178 0.6702 32 1 4.7472 -5.6076 2.1116 33 1 7.4584 -1.2773 -0.2546 34 1 6.1745 -1.4554 -1.4777 35 1 6.1278 0.2898 1.0186 36 1 6.1139 0.8320 -0.6738 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259897987.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:49 Heat of formation + Delta-G solvation = -13.179975 kcal Electronic energy + Delta-G solvation = -15911.264819 eV Core-core repulsion = 13551.402864 eV Total energy + Delta-G solvation = -2359.861954 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.56860 -35.89866 -33.69602 -32.28681 -30.81647 -28.81112 -27.14658 -25.63698 -24.92985 -22.10154 -20.89886 -19.98858 -18.11551 -16.40184 -15.46557 -14.89454 -14.57860 -14.13607 -13.71043 -13.20123 -12.99148 -12.85275 -12.55381 -12.47045 -12.11389 -11.96180 -11.72531 -11.49819 -11.32906 -10.93146 -10.64819 -10.61449 -10.40196 -10.18519 -10.13936 -9.51175 -8.98313 -8.72194 -8.39750 -7.87618 -7.68214 -5.98398 -4.03942 1.90244 2.02135 3.30140 3.38461 3.42332 4.27286 4.44741 5.16302 5.23928 5.32061 5.44194 5.51818 5.62211 5.70408 5.80029 5.84451 5.91228 5.99695 6.04863 6.09582 6.14666 6.31626 6.34539 6.65270 6.73328 6.76385 6.85692 6.96984 7.03631 7.08935 7.14973 7.23599 7.62069 7.66572 7.77338 8.00181 8.10298 8.46258 9.00593 9.61048 11.08417 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.033323 B = 0.007404 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.052286 B = 3780.597413 C = 4477.512433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.096 4.096 3 C -0.141 4.141 4 C -0.093 4.093 5 C -0.111 4.111 6 C -0.083 4.083 7 C -0.043 4.043 8 C -0.132 4.132 9 C -0.077 4.077 10 C 0.050 3.950 11 H 0.028 0.972 12 C -0.513 4.513 13 H 0.056 0.944 14 C 0.061 3.939 15 N -0.891 5.891 16 Si 0.889 3.111 17 H -0.273 1.273 18 H -0.285 1.285 19 H -0.285 1.285 20 C -0.111 4.111 21 C -0.076 4.076 22 H 0.064 0.936 23 H 0.058 0.942 24 H 0.061 0.939 25 H 0.110 0.890 26 H 0.063 0.937 27 H 0.058 0.942 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.055 0.945 31 H 0.098 0.902 32 H 0.259 0.741 33 H 0.053 0.947 34 H 0.048 0.952 35 H 0.066 0.934 36 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.092 10.546 -2.989 12.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.096 4.096 3 C -0.159 4.159 4 C -0.093 4.093 5 C -0.167 4.167 6 C -0.083 4.083 7 C -0.043 4.043 8 C -0.150 4.150 9 C -0.114 4.114 10 C 0.032 3.968 11 H 0.047 0.953 12 C -0.551 4.551 13 H 0.075 0.925 14 C -0.140 4.140 15 N -0.530 5.530 16 Si 0.717 3.283 17 H -0.198 1.198 18 H -0.211 1.211 19 H -0.211 1.211 20 C -0.149 4.149 21 C -0.113 4.113 22 H 0.082 0.918 23 H 0.077 0.923 24 H 0.080 0.920 25 H 0.128 0.872 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.073 0.927 31 H 0.116 0.884 32 H 0.069 0.931 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.084 0.916 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -5.194 10.432 -2.873 12.002 hybrid contribution 0.275 -0.961 -0.074 1.002 sum -4.919 9.471 -2.948 11.072 Atomic orbital electron populations 1.20706 0.92030 1.01968 1.01707 1.19706 0.95333 0.93414 1.01193 1.20568 0.93369 0.96855 1.05149 1.19841 0.93599 0.94707 1.01105 1.20773 1.00075 0.94254 1.01646 1.19565 0.95741 0.91722 1.01273 1.20385 0.93110 0.96588 0.94237 1.21101 0.94155 0.97019 1.02735 1.20746 0.98821 0.90545 1.01305 1.18647 0.90778 0.92456 0.94916 0.95350 1.21250 1.14619 0.93305 1.25914 0.92530 1.24989 0.95078 0.98923 0.95014 1.69902 1.26048 1.28304 1.28712 0.86580 0.79814 0.83896 0.77980 1.19806 1.21080 1.21087 1.21658 0.99097 0.94196 0.99936 1.20503 0.91040 0.99057 1.00736 0.91768 0.92265 0.91953 0.87215 0.91785 0.92323 0.91464 0.86728 0.92657 0.88383 0.93081 0.92854 0.93300 0.91585 0.92390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.02 36.01 0.36 -1.01 16 2 C -0.10 -1.59 5.87 -104.72 -0.61 -2.21 16 3 C -0.14 -2.26 9.35 -39.69 -0.37 -2.63 16 4 C -0.09 -1.56 5.89 -104.48 -0.62 -2.17 16 5 C -0.11 -1.46 9.14 36.00 0.33 -1.13 16 6 C -0.08 -1.61 5.74 -104.61 -0.60 -2.21 16 7 C -0.04 -0.91 5.74 -104.62 -0.60 -1.51 16 8 C -0.13 -2.51 9.27 -39.45 -0.37 -2.88 16 9 C -0.08 -1.85 4.64 -28.05 -0.13 -1.98 16 10 C 0.05 1.26 2.11 -91.74 -0.19 1.07 16 11 H 0.03 0.78 8.10 -51.93 -0.42 0.36 16 12 C -0.51 -14.02 8.54 -34.44 -0.29 -14.32 16 13 H 0.06 1.53 7.75 -52.49 -0.41 1.12 16 14 C 0.06 1.68 5.31 -17.82 -0.09 1.59 16 15 N -0.89 -25.39 11.50 55.43 0.64 -24.76 16 16 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 17 H -0.27 -6.44 7.11 56.52 0.40 -6.03 16 18 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 20 C -0.11 -2.35 5.23 -26.70 -0.14 -2.49 16 21 C -0.08 -1.40 4.46 -28.05 -0.12 -1.53 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 24 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 25 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.67 8.08 -51.92 -0.42 0.25 16 28 H 0.07 0.86 6.71 -51.93 -0.35 0.51 16 29 H 0.11 2.09 8.05 -52.49 -0.42 1.66 16 30 H 0.06 1.35 8.11 -51.93 -0.42 0.92 16 31 H 0.10 2.59 6.41 -51.93 -0.33 2.26 16 32 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 33 H 0.05 1.09 8.12 -51.93 -0.42 0.66 16 34 H 0.05 1.02 8.10 -51.93 -0.42 0.60 16 35 H 0.07 1.19 8.11 -51.93 -0.42 0.77 16 36 H 0.06 0.92 7.18 -51.93 -0.37 0.55 16 LS Contribution 287.18 15.07 4.33 4.33 Total: -1.00 -28.57 287.18 -9.16 -37.73 By element: Atomic # 1 Polarization: 5.56 SS G_CDS: -5.65 Total: -0.09 kcal Atomic # 6 Polarization: -29.95 SS G_CDS: -3.45 Total: -33.40 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.64 Total: -24.76 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.57 -9.16 -37.73 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259897987.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.546 kcal (2) G-P(sol) polarization free energy of solvation -28.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.726 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds