Wall clock time and date at job start Mon Mar 30 2020 03:25:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.38262 * 120.11292 * 2 1 4 4 C 1.37926 * 119.77726 * 179.89299 * 3 2 1 5 5 C 1.50699 * 119.73505 * 180.02562 * 4 3 2 6 6 C 1.38921 * 120.54028 * 0.03299 * 4 3 2 7 7 C 1.37653 * 119.68088 * 0.20233 * 6 4 3 8 8 C 1.37929 * 120.11803 * 180.02562 * 2 1 3 9 9 C 1.50639 * 122.56614 * 179.32647 * 7 6 4 10 10 C 1.52736 * 110.57428 * 17.83294 * 9 7 6 11 11 H 1.09007 * 109.71640 * 68.58923 * 10 9 7 12 12 C 1.50701 * 109.68584 * 189.12602 * 10 9 7 13 13 H 1.08002 * 119.99761 * 118.91497 * 12 10 9 14 14 C 1.37871 * 119.99694 * 299.20060 * 12 10 9 15 15 N 1.31514 * 120.00482 * 359.71466 * 14 12 10 16 16 Si 1.86801 * 119.99746 * 179.72062 * 14 12 10 17 17 H 1.48494 * 109.47230 * 359.97438 * 16 14 12 18 18 H 1.48505 * 109.47301 * 119.99669 * 16 14 12 19 19 H 1.48498 * 109.47430 * 239.99516 * 16 14 12 20 20 C 1.53327 * 108.37821 * 308.85059 * 10 9 7 21 21 C 1.50635 * 117.75262 * 180.25440 * 6 4 3 22 22 H 1.09001 * 109.46597 * 269.97067 * 1 2 3 23 23 H 1.08993 * 109.46996 * 29.97516 * 1 2 3 24 24 H 1.09002 * 109.46567 * 149.97624 * 1 2 3 25 25 H 1.08005 * 120.11528 * 359.91805 * 3 2 1 26 26 H 1.08994 * 109.47414 * 269.99641 * 5 4 3 27 27 H 1.09007 * 109.46602 * 29.99242 * 5 4 3 28 28 H 1.08995 * 109.47384 * 149.98844 * 5 4 3 29 29 H 1.08002 * 119.72837 * 359.97438 * 8 2 1 30 30 H 1.08996 * 109.24800 * 257.55764 * 9 7 6 31 31 H 1.09000 * 109.26043 * 138.11527 * 9 7 6 32 32 H 0.96995 * 120.00207 * 179.97438 * 15 14 12 33 33 H 1.08999 * 109.67959 * 189.59287 * 20 10 9 34 34 H 1.09003 * 109.67696 * 310.10087 * 20 10 9 35 35 H 1.08996 * 109.25347 * 77.38286 * 21 6 4 36 36 H 1.09000 * 109.24915 * 317.95768 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2007 1.1960 0.0000 4 6 3.5800 1.1879 0.0022 5 6 4.3351 2.4921 0.0028 6 6 4.2789 -0.0127 0.0038 7 6 3.5882 -1.2034 -0.0011 8 6 2.1992 -1.1931 -0.0005 9 6 4.2796 -2.5417 -0.0147 10 6 5.7377 -2.3970 0.4163 11 1 5.7845 -2.1343 1.4732 12 6 6.4672 -3.6949 0.1833 13 1 7.3073 -3.7280 -0.4945 14 6 6.0582 -4.8413 0.8309 15 7 5.0351 -4.8010 1.6563 16 14 6.9575 -6.4519 0.5362 17 1 8.0640 -6.2315 -0.4293 18 1 7.5123 -6.9512 1.8200 19 1 6.0108 -7.4535 -0.0168 20 6 6.3813 -1.2854 -0.4211 21 6 5.7838 0.0518 0.0121 22 1 -0.3632 -0.0005 1.0277 23 1 -0.3633 0.8902 -0.5134 24 1 -0.3632 -0.8898 -0.5142 25 1 1.6644 2.1335 -0.0013 26 1 4.5189 2.8060 -1.0246 27 1 3.7459 3.2527 0.5153 28 1 5.2864 2.3609 0.5184 29 1 1.6567 -2.1270 -0.0005 30 1 4.2420 -2.9553 -1.0224 31 1 3.7678 -3.2178 0.6702 32 1 4.7472 -5.6076 2.1116 33 1 7.4584 -1.2773 -0.2546 34 1 6.1745 -1.4554 -1.4777 35 1 6.1278 0.2898 1.0186 36 1 6.1139 0.8320 -0.6738 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259897987.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:49 Heat of formation + Delta-G solvation = -26.519439 kcal Electronic energy + Delta-G solvation = -15911.843261 eV Core-core repulsion = 13551.402864 eV Total energy + Delta-G solvation = -2360.440397 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.00674 -37.55357 -35.15892 -34.11488 -32.29585 -30.51097 -28.31259 -27.03375 -26.83953 -23.74849 -22.54362 -21.34513 -19.76140 -18.45203 -16.98197 -16.50025 -16.28212 -15.65234 -15.00453 -14.66889 -14.48541 -14.44072 -13.88401 -13.73996 -13.60636 -13.35246 -13.15993 -13.01119 -12.82803 -12.69895 -12.36644 -12.28555 -11.96763 -11.78589 -11.72883 -11.36029 -10.80124 -10.66659 -10.48873 -9.28565 -9.11279 -8.10404 -6.24511 0.53737 0.61059 1.38953 1.40540 1.52344 2.42236 2.88247 3.16913 3.94100 3.98608 4.12009 4.19727 4.34943 4.37826 4.53528 4.65775 4.72729 4.76353 4.85353 4.89115 4.90092 4.97776 4.98902 5.09063 5.14376 5.22971 5.27197 5.29740 5.42799 5.49485 5.60074 5.76228 5.78325 5.97157 6.01177 6.08776 6.30984 6.38560 6.87993 7.44054 8.95175 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.033323 B = 0.007404 C = 0.006252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.052286 B = 3780.597413 C = 4477.512433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.091 4.091 5 C -0.110 4.110 6 C -0.105 4.105 7 C -0.078 4.078 8 C -0.154 4.154 9 C -0.061 4.061 10 C 0.047 3.953 11 H -0.007 1.007 12 C -0.534 4.534 13 H 0.055 0.945 14 C 0.011 3.989 15 N -0.919 5.919 16 Si 0.955 3.045 17 H -0.266 1.266 18 H -0.280 1.280 19 H -0.281 1.281 20 C -0.105 4.105 21 C -0.069 4.069 22 H 0.075 0.925 23 H 0.085 0.915 24 H 0.064 0.936 25 H 0.148 0.852 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.107 0.893 30 H 0.036 0.964 31 H 0.062 0.938 32 H 0.260 0.740 33 H 0.057 0.943 34 H 0.046 0.954 35 H 0.067 0.933 36 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.583 12.863 -3.650 14.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.094 4.094 3 C -0.155 4.155 4 C -0.091 4.091 5 C -0.166 4.166 6 C -0.105 4.105 7 C -0.078 4.078 8 C -0.172 4.172 9 C -0.099 4.099 10 C 0.029 3.971 11 H 0.011 0.989 12 C -0.572 4.572 13 H 0.073 0.927 14 C -0.188 4.188 15 N -0.559 5.559 16 Si 0.781 3.219 17 H -0.190 1.190 18 H -0.206 1.206 19 H -0.207 1.207 20 C -0.142 4.142 21 C -0.106 4.106 22 H 0.094 0.906 23 H 0.104 0.896 24 H 0.083 0.917 25 H 0.165 0.835 26 H 0.100 0.900 27 H 0.100 0.900 28 H 0.087 0.913 29 H 0.125 0.875 30 H 0.055 0.945 31 H 0.081 0.919 32 H 0.069 0.931 33 H 0.076 0.924 34 H 0.065 0.935 35 H 0.086 0.914 36 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -5.680 12.757 -3.540 14.406 hybrid contribution 0.369 -1.633 0.145 1.681 sum -5.312 11.124 -3.395 12.786 Atomic orbital electron populations 1.20774 0.89149 1.03443 1.02847 1.20128 0.97466 0.92562 0.99228 1.21055 0.93307 0.98011 1.03158 1.20260 0.94389 0.95201 0.99271 1.20853 1.00049 0.92577 1.03130 1.19746 0.96288 0.92178 1.02272 1.20222 0.94193 0.95707 0.97655 1.21162 0.93571 0.98256 1.04214 1.20365 0.98263 0.92191 0.99050 1.18594 0.91816 0.93216 0.93512 0.98906 1.21626 1.14884 0.94737 1.25977 0.92680 1.25798 0.95826 1.02357 0.94775 1.70056 1.27251 1.29128 1.29447 0.85548 0.78747 0.79599 0.78033 1.18976 1.20579 1.20660 1.21535 0.99158 0.94609 0.98942 1.20456 0.90632 0.97952 1.01526 0.90644 0.89647 0.91705 0.83462 0.90024 0.89969 0.91271 0.87487 0.94548 0.91913 0.93077 0.92436 0.93510 0.91436 0.89142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.38 10.02 71.24 0.71 -1.67 16 2 C -0.09 -2.92 5.87 -19.93 -0.12 -3.04 16 3 C -0.14 -3.91 9.35 22.20 0.21 -3.70 16 4 C -0.09 -2.81 5.89 -19.77 -0.12 -2.93 16 5 C -0.11 -2.41 9.14 71.24 0.65 -1.76 16 6 C -0.10 -4.01 5.74 -19.86 -0.11 -4.12 16 7 C -0.08 -3.40 5.74 -19.86 -0.11 -3.52 16 8 C -0.15 -5.99 9.27 22.36 0.21 -5.78 16 9 C -0.06 -3.13 4.64 29.74 0.14 -3.00 16 10 C 0.05 2.48 2.11 -11.52 -0.02 2.46 16 11 H -0.01 -0.43 8.10 -2.38 -0.02 -0.45 16 12 C -0.53 -30.40 8.54 25.60 0.22 -30.18 16 13 H 0.05 3.06 7.75 -2.91 -0.02 3.04 16 14 C 0.01 0.62 5.31 84.65 0.45 1.07 16 15 N -0.92 -54.81 11.50 21.45 0.25 -54.56 16 16 Si 0.96 44.54 29.54 68.60 2.03 46.57 16 17 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 18 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 19 H -0.28 -12.83 7.11 99.48 0.71 -12.13 16 20 C -0.10 -4.51 5.23 30.61 0.16 -4.35 16 21 C -0.07 -2.47 4.46 29.74 0.13 -2.34 16 22 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.08 1.50 8.09 -2.39 -0.02 1.48 16 24 H 0.06 1.43 8.09 -2.39 -0.02 1.41 16 25 H 0.15 3.09 8.06 -2.91 -0.02 3.07 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.08 1.45 8.08 -2.38 -0.02 1.43 16 28 H 0.07 1.51 6.71 -2.39 -0.02 1.49 16 29 H 0.11 4.14 8.05 -2.91 -0.02 4.12 16 30 H 0.04 1.91 8.11 -2.39 -0.02 1.89 16 31 H 0.06 3.59 6.41 -2.39 -0.02 3.57 16 32 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 33 H 0.06 2.36 8.12 -2.39 -0.02 2.34 16 34 H 0.05 1.99 8.10 -2.39 -0.02 1.97 16 35 H 0.07 2.38 8.11 -2.39 -0.02 2.36 16 36 H 0.09 2.64 7.18 -2.39 -0.02 2.62 16 Total: -1.00 -64.62 287.18 5.70 -58.92 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: 1.04 Total: 11.93 kcal Atomic # 6 Polarization: -65.25 SS G_CDS: 2.39 Total: -62.86 kcal Atomic # 7 Polarization: -54.81 SS G_CDS: 0.25 Total: -54.56 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -64.62 5.70 -58.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259897987.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.399 kcal (2) G-P(sol) polarization free energy of solvation -64.623 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.519 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds