Wall clock time and date at job start Mon Mar 30 2020 03:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38264 * 120.11454 * 2 1 4 4 C 1.37936 * 119.76974 * 180.11807 * 3 2 1 5 5 C 1.50706 * 119.72400 * 180.02562 * 4 3 2 6 6 C 1.38912 * 120.54395 * 0.29861 * 4 3 2 7 7 C 1.37662 * 119.68157 * 359.23524 * 6 4 3 8 8 C 1.37936 * 120.11547 * 179.97438 * 2 1 3 9 9 C 1.50628 * 122.56162 * 180.74891 * 7 6 4 10 10 C 1.52737 * 110.59413 * 342.38071 * 9 7 6 11 11 H 1.09000 * 109.67560 * 291.37282 * 10 9 7 12 12 C 1.50697 * 109.67647 * 170.86847 * 10 9 7 13 13 H 1.08003 * 119.99755 * 239.99546 * 12 10 9 14 14 C 1.37876 * 120.00334 * 60.00039 * 12 10 9 15 15 N 1.31509 * 120.00090 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99959 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46936 * 60.00002 * 16 14 12 18 18 H 1.48497 * 109.47040 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47258 * 300.00141 * 16 14 12 20 20 C 1.53316 * 108.39697 * 51.10179 * 10 9 7 21 21 C 1.50630 * 117.75651 * 179.56361 * 6 4 3 22 22 H 1.09001 * 109.47294 * 89.99156 * 1 2 3 23 23 H 1.09001 * 109.47461 * 209.99755 * 1 2 3 24 24 H 1.09002 * 109.47165 * 329.99867 * 1 2 3 25 25 H 1.07996 * 120.11545 * 0.14608 * 3 2 1 26 26 H 1.08999 * 109.47015 * 90.00389 * 5 4 3 27 27 H 1.09000 * 109.46646 * 209.99541 * 5 4 3 28 28 H 1.09000 * 109.47248 * 330.00259 * 5 4 3 29 29 H 1.08000 * 119.72170 * 359.93151 * 8 2 1 30 30 H 1.09000 * 109.25467 * 102.66680 * 9 7 6 31 31 H 1.08998 * 109.25242 * 222.13275 * 9 7 6 32 32 H 0.97002 * 119.99782 * 180.02562 * 15 14 12 33 33 H 1.08998 * 109.68169 * 49.88205 * 20 10 9 34 34 H 1.09000 * 109.68201 * 170.43589 * 20 10 9 35 35 H 1.09007 * 109.37643 * 41.78434 * 21 6 4 36 36 H 1.08996 * 109.04417 * 282.37585 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1960 0.0000 4 6 3.5800 1.1877 -0.0025 5 6 4.3351 2.4920 -0.0019 6 6 4.2787 -0.0129 -0.0112 7 6 3.5881 -1.2036 -0.0015 8 6 2.1991 -1.1932 0.0005 9 6 4.2795 -2.5418 0.0066 10 6 5.7359 -2.3967 -0.4301 11 1 5.7776 -2.1327 -1.4868 12 6 6.4657 -3.6953 -0.2024 13 1 7.3195 -3.7262 0.4583 14 6 6.0437 -4.8439 -0.8376 15 7 5.0044 -4.8062 -1.6426 16 14 6.9489 -6.4535 -0.5558 17 1 6.9003 -6.8028 0.8867 18 1 6.3018 -7.5305 -1.3474 19 1 8.3637 -6.3070 -0.9822 20 6 6.3832 -1.2862 0.4056 21 6 5.7836 0.0514 -0.0236 22 1 -0.3634 0.0002 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6645 2.1334 0.0024 26 1 4.5190 2.8048 1.0259 27 1 5.2865 2.3611 -0.5175 28 1 3.7460 3.2531 -0.5135 29 1 1.6564 -2.1269 0.0021 30 1 4.2460 -2.9577 1.0136 31 1 3.7651 -3.2162 -0.6780 32 1 4.7073 -5.6144 -2.0892 33 1 6.1807 -1.4570 1.4629 34 1 7.4596 -1.2779 0.2342 35 1 6.1180 0.8312 0.6608 36 1 6.1211 0.2896 -1.0322 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259897988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:51 Heat of formation + Delta-G solvation = -12.929345 kcal Electronic energy + Delta-G solvation = -15913.625059 eV Core-core repulsion = 13553.773973 eV Total energy + Delta-G solvation = -2359.851086 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.56541 -35.89749 -33.69514 -32.28381 -30.81591 -28.80320 -27.14407 -25.63401 -24.92852 -22.09799 -20.89654 -19.98410 -18.11280 -16.39661 -15.45896 -14.89043 -14.58294 -14.13629 -13.70942 -13.19909 -12.99019 -12.85039 -12.55098 -12.46863 -12.11059 -11.95027 -11.71968 -11.49418 -11.33397 -10.89452 -10.66461 -10.62774 -10.39848 -10.20079 -10.12855 -9.51016 -8.98292 -8.73297 -8.38881 -7.87239 -7.67789 -5.97781 -4.03733 1.90565 2.02461 3.32797 3.37611 3.40142 4.27616 4.44789 5.16570 5.24222 5.32178 5.44431 5.52033 5.62442 5.70615 5.80216 5.84640 5.91375 5.99923 6.05074 6.09756 6.14994 6.31776 6.34875 6.65449 6.73573 6.76646 6.86112 6.97379 7.03901 7.09624 7.15290 7.24084 7.62348 7.66909 7.77501 8.00689 8.11342 8.46437 9.00176 9.61117 11.08642 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.033316 B = 0.007414 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.243036 B = 3775.537782 C = 4476.292883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.096 4.096 3 C -0.141 4.141 4 C -0.093 4.093 5 C -0.111 4.111 6 C -0.083 4.083 7 C -0.043 4.043 8 C -0.132 4.132 9 C -0.078 4.078 10 C 0.051 3.949 11 H 0.027 0.973 12 C -0.514 4.514 13 H 0.055 0.945 14 C 0.062 3.938 15 N -0.891 5.891 16 Si 0.890 3.110 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.277 1.277 20 C -0.111 4.111 21 C -0.077 4.077 22 H 0.064 0.936 23 H 0.061 0.939 24 H 0.058 0.942 25 H 0.110 0.890 26 H 0.063 0.937 27 H 0.066 0.934 28 H 0.058 0.942 29 H 0.115 0.885 30 H 0.055 0.945 31 H 0.100 0.900 32 H 0.260 0.740 33 H 0.048 0.952 34 H 0.053 0.947 35 H 0.058 0.942 36 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.057 10.512 2.946 12.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.096 4.096 3 C -0.160 4.160 4 C -0.093 4.093 5 C -0.168 4.168 6 C -0.083 4.083 7 C -0.043 4.043 8 C -0.150 4.150 9 C -0.115 4.115 10 C 0.033 3.967 11 H 0.046 0.954 12 C -0.553 4.553 13 H 0.074 0.926 14 C -0.139 4.139 15 N -0.530 5.530 16 Si 0.718 3.282 17 H -0.203 1.203 18 H -0.213 1.213 19 H -0.203 1.203 20 C -0.149 4.149 21 C -0.113 4.113 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.077 0.923 25 H 0.128 0.872 26 H 0.082 0.918 27 H 0.085 0.915 28 H 0.077 0.923 29 H 0.133 0.867 30 H 0.073 0.927 31 H 0.118 0.882 32 H 0.070 0.930 33 H 0.067 0.933 34 H 0.071 0.929 35 H 0.076 0.924 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.168 10.394 2.824 11.947 hybrid contribution 0.301 -0.949 0.087 0.999 sum -4.868 9.445 2.911 11.017 Atomic orbital electron populations 1.20705 0.92033 1.01967 1.01705 1.19706 0.95329 0.93416 1.01196 1.20568 0.93366 0.96853 1.05165 1.19841 0.93600 0.94703 1.01118 1.20776 1.00074 0.94257 1.01646 1.19566 0.95739 0.91729 1.01285 1.20392 0.93118 0.96599 0.94207 1.21101 0.94156 0.97016 1.02733 1.20755 0.98826 0.90535 1.01354 1.18631 0.90818 0.92420 0.94851 0.95440 1.21176 1.13701 0.93215 1.27162 0.92637 1.24984 0.95070 0.98907 0.94988 1.69874 1.25082 1.28419 1.29608 0.86690 0.79996 0.83308 0.78190 1.20323 1.21344 1.20306 1.21655 0.99072 0.94194 0.99962 1.20506 0.91050 0.99059 1.00728 0.91770 0.91951 0.92271 0.87218 0.91790 0.91466 0.92323 0.86725 0.92664 0.88230 0.92960 0.93285 0.92863 0.92369 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 10.02 36.00 0.36 -1.01 16 2 C -0.10 -1.60 5.87 -104.72 -0.61 -2.21 16 3 C -0.14 -2.26 9.35 -39.68 -0.37 -2.63 16 4 C -0.09 -1.56 5.89 -104.48 -0.62 -2.17 16 5 C -0.11 -1.46 9.15 36.01 0.33 -1.13 16 6 C -0.08 -1.62 5.74 -104.62 -0.60 -2.22 16 7 C -0.04 -0.91 5.74 -104.62 -0.60 -1.51 16 8 C -0.13 -2.52 9.27 -39.45 -0.37 -2.88 16 9 C -0.08 -1.86 4.63 -28.05 -0.13 -1.99 16 10 C 0.05 1.28 2.12 -91.75 -0.19 1.09 16 11 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 12 C -0.51 -14.08 8.55 -34.44 -0.29 -14.37 16 13 H 0.06 1.49 7.75 -52.48 -0.41 1.09 16 14 C 0.06 1.70 5.31 -17.82 -0.09 1.61 16 15 N -0.89 -25.39 11.44 55.43 0.63 -24.76 16 16 Si 0.89 21.22 29.54 -169.99 -5.02 16.20 16 17 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C -0.11 -2.35 5.23 -26.70 -0.14 -2.49 16 21 C -0.08 -1.41 4.45 -28.05 -0.12 -1.53 16 22 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 24 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 25 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.07 0.86 6.69 -51.93 -0.35 0.52 16 28 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 29 H 0.11 2.09 8.05 -52.49 -0.42 1.67 16 30 H 0.06 1.35 8.11 -51.93 -0.42 0.93 16 31 H 0.10 2.63 6.34 -51.93 -0.33 2.30 16 32 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 33 H 0.05 1.03 8.10 -51.93 -0.42 0.61 16 34 H 0.05 1.08 8.12 -51.93 -0.42 0.66 16 35 H 0.06 0.93 7.17 -51.92 -0.37 0.55 16 36 H 0.07 1.18 8.11 -51.93 -0.42 0.76 16 LS Contribution 287.05 15.07 4.33 4.33 Total: -1.00 -28.51 287.05 -9.16 -37.67 By element: Atomic # 1 Polarization: 5.67 SS G_CDS: -5.65 Total: 0.02 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: -3.45 Total: -33.46 kcal Atomic # 7 Polarization: -25.39 SS G_CDS: 0.63 Total: -24.76 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -28.51 -9.16 -37.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259897988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.742 kcal (2) G-P(sol) polarization free energy of solvation -28.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.671 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds