Wall clock time and date at job start Mon Mar 30 2020 03:25:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38264 * 120.11454 * 2 1 4 4 C 1.37936 * 119.76974 * 180.11807 * 3 2 1 5 5 C 1.50706 * 119.72400 * 180.02562 * 4 3 2 6 6 C 1.38912 * 120.54395 * 0.29861 * 4 3 2 7 7 C 1.37662 * 119.68157 * 359.23524 * 6 4 3 8 8 C 1.37936 * 120.11547 * 179.97438 * 2 1 3 9 9 C 1.50628 * 122.56162 * 180.74891 * 7 6 4 10 10 C 1.52737 * 110.59413 * 342.38071 * 9 7 6 11 11 H 1.09000 * 109.67560 * 291.37282 * 10 9 7 12 12 C 1.50697 * 109.67647 * 170.86847 * 10 9 7 13 13 H 1.08003 * 119.99755 * 239.99546 * 12 10 9 14 14 C 1.37876 * 120.00334 * 60.00039 * 12 10 9 15 15 N 1.31509 * 120.00090 * 0.02562 * 14 12 10 16 16 Si 1.86804 * 119.99959 * 179.97438 * 14 12 10 17 17 H 1.48502 * 109.46936 * 60.00002 * 16 14 12 18 18 H 1.48497 * 109.47040 * 179.97438 * 16 14 12 19 19 H 1.48498 * 109.47258 * 300.00141 * 16 14 12 20 20 C 1.53316 * 108.39697 * 51.10179 * 10 9 7 21 21 C 1.50630 * 117.75651 * 179.56361 * 6 4 3 22 22 H 1.09001 * 109.47294 * 89.99156 * 1 2 3 23 23 H 1.09001 * 109.47461 * 209.99755 * 1 2 3 24 24 H 1.09002 * 109.47165 * 329.99867 * 1 2 3 25 25 H 1.07996 * 120.11545 * 0.14608 * 3 2 1 26 26 H 1.08999 * 109.47015 * 90.00389 * 5 4 3 27 27 H 1.09000 * 109.46646 * 209.99541 * 5 4 3 28 28 H 1.09000 * 109.47248 * 330.00259 * 5 4 3 29 29 H 1.08000 * 119.72170 * 359.93151 * 8 2 1 30 30 H 1.09000 * 109.25467 * 102.66680 * 9 7 6 31 31 H 1.08998 * 109.25242 * 222.13275 * 9 7 6 32 32 H 0.97002 * 119.99782 * 180.02562 * 15 14 12 33 33 H 1.08998 * 109.68169 * 49.88205 * 20 10 9 34 34 H 1.09000 * 109.68201 * 170.43589 * 20 10 9 35 35 H 1.09007 * 109.37643 * 41.78434 * 21 6 4 36 36 H 1.08996 * 109.04417 * 282.37585 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2007 1.1960 0.0000 4 6 3.5800 1.1877 -0.0025 5 6 4.3351 2.4920 -0.0019 6 6 4.2787 -0.0129 -0.0112 7 6 3.5881 -1.2036 -0.0015 8 6 2.1991 -1.1932 0.0005 9 6 4.2795 -2.5418 0.0066 10 6 5.7359 -2.3967 -0.4301 11 1 5.7776 -2.1327 -1.4868 12 6 6.4657 -3.6953 -0.2024 13 1 7.3195 -3.7262 0.4583 14 6 6.0437 -4.8439 -0.8376 15 7 5.0044 -4.8062 -1.6426 16 14 6.9489 -6.4535 -0.5558 17 1 6.9003 -6.8028 0.8867 18 1 6.3018 -7.5305 -1.3474 19 1 8.3637 -6.3070 -0.9822 20 6 6.3832 -1.2862 0.4056 21 6 5.7836 0.0514 -0.0236 22 1 -0.3634 0.0002 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6645 2.1334 0.0024 26 1 4.5190 2.8048 1.0259 27 1 5.2865 2.3611 -0.5175 28 1 3.7460 3.2531 -0.5135 29 1 1.6564 -2.1269 0.0021 30 1 4.2460 -2.9577 1.0136 31 1 3.7651 -3.2162 -0.6780 32 1 4.7073 -5.6144 -2.0892 33 1 6.1807 -1.4570 1.4629 34 1 7.4596 -1.2779 0.2342 35 1 6.1180 0.8312 0.6608 36 1 6.1211 0.2896 -1.0322 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259897988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:51 Heat of formation + Delta-G solvation = -26.218783 kcal Electronic energy + Delta-G solvation = -15914.201333 eV Core-core repulsion = 13553.773973 eV Total energy + Delta-G solvation = -2360.427359 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -41.00572 -37.55404 -35.16057 -34.11068 -32.29684 -30.50462 -28.31183 -27.03267 -26.83826 -23.74589 -22.54315 -21.34301 -19.76051 -18.44373 -16.97848 -16.50620 -16.27934 -15.65198 -15.00549 -14.67244 -14.48394 -14.42819 -13.88355 -13.74251 -13.59593 -13.35231 -13.15121 -13.02100 -12.79930 -12.68677 -12.40436 -12.28133 -11.96539 -11.79666 -11.72361 -11.35977 -10.80284 -10.67259 -10.47794 -9.28435 -9.11152 -8.09663 -6.24311 0.53832 0.61155 1.40475 1.42078 1.49750 2.42467 2.88338 3.17101 3.94105 3.98719 4.12159 4.19797 4.34921 4.38053 4.53588 4.65817 4.72797 4.76437 4.85356 4.89163 4.90220 4.97987 4.98966 5.09069 5.14374 5.22992 5.27575 5.29853 5.43065 5.49534 5.59783 5.76324 5.78477 5.97307 6.01630 6.09390 6.31262 6.38569 6.87711 7.44155 8.95122 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.033316 B = 0.007414 C = 0.006254 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.243036 B = 3775.537782 C = 4476.292883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.091 4.091 5 C -0.110 4.110 6 C -0.105 4.105 7 C -0.078 4.078 8 C -0.154 4.154 9 C -0.062 4.062 10 C 0.048 3.952 11 H -0.008 1.008 12 C -0.537 4.537 13 H 0.055 0.945 14 C 0.012 3.988 15 N -0.919 5.919 16 Si 0.955 3.045 17 H -0.271 1.271 18 H -0.284 1.284 19 H -0.270 1.270 20 C -0.105 4.105 21 C -0.069 4.069 22 H 0.075 0.925 23 H 0.064 0.936 24 H 0.085 0.915 25 H 0.148 0.852 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.081 0.919 29 H 0.107 0.893 30 H 0.035 0.965 31 H 0.064 0.936 32 H 0.260 0.740 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.091 0.909 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.522 12.833 3.603 14.428 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.094 4.094 3 C -0.155 4.155 4 C -0.091 4.091 5 C -0.166 4.166 6 C -0.105 4.105 7 C -0.078 4.078 8 C -0.172 4.172 9 C -0.099 4.099 10 C 0.029 3.971 11 H 0.010 0.990 12 C -0.575 4.575 13 H 0.073 0.927 14 C -0.187 4.187 15 N -0.558 5.558 16 Si 0.781 3.219 17 H -0.196 1.196 18 H -0.210 1.210 19 H -0.195 1.195 20 C -0.142 4.142 21 C -0.106 4.106 22 H 0.094 0.906 23 H 0.083 0.917 24 H 0.104 0.896 25 H 0.165 0.835 26 H 0.100 0.900 27 H 0.087 0.913 28 H 0.100 0.900 29 H 0.125 0.875 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.069 0.931 33 H 0.065 0.935 34 H 0.076 0.924 35 H 0.109 0.891 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.628 12.723 3.488 14.343 hybrid contribution 0.387 -1.621 -0.130 1.672 sum -5.241 11.102 3.357 12.728 Atomic orbital electron populations 1.20773 0.89151 1.03441 1.02847 1.20129 0.97465 0.92563 0.99234 1.21056 0.93306 0.98008 1.03169 1.20260 0.94390 0.95199 0.99279 1.20855 1.00049 0.92575 1.03130 1.19747 0.96293 0.92183 1.02279 1.20227 0.94201 0.95720 0.97632 1.21161 0.93574 0.98252 1.04213 1.20372 0.98287 0.92192 0.99064 1.18582 0.91852 0.93191 0.93456 0.98984 1.21575 1.14010 0.94644 1.27263 0.92666 1.25798 0.95824 1.02353 0.94728 1.70038 1.26299 1.29158 1.30332 0.85658 0.78939 0.79062 0.78290 1.19623 1.20972 1.19472 1.21533 0.99143 0.94606 0.98956 1.20459 0.90635 0.97956 1.01519 0.90645 0.91705 0.89648 0.83463 0.90028 0.91267 0.89967 0.87493 0.94627 0.91737 0.93056 0.93513 0.92421 0.89111 0.91467 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.39 10.02 71.24 0.71 -1.68 16 2 C -0.09 -2.93 5.87 -19.93 -0.12 -3.05 16 3 C -0.14 -3.92 9.35 22.20 0.21 -3.71 16 4 C -0.09 -2.82 5.89 -19.77 -0.12 -2.93 16 5 C -0.11 -2.41 9.15 71.24 0.65 -1.76 16 6 C -0.11 -4.02 5.74 -19.86 -0.11 -4.14 16 7 C -0.08 -3.41 5.74 -19.86 -0.11 -3.52 16 8 C -0.15 -6.00 9.27 22.36 0.21 -5.79 16 9 C -0.06 -3.16 4.63 29.74 0.14 -3.03 16 10 C 0.05 2.51 2.12 -11.52 -0.02 2.49 16 11 H -0.01 -0.47 8.10 -2.39 -0.02 -0.49 16 12 C -0.54 -30.57 8.55 25.60 0.22 -30.35 16 13 H 0.06 3.05 7.75 -2.91 -0.02 3.03 16 14 C 0.01 0.65 5.31 84.66 0.45 1.10 16 15 N -0.92 -54.79 11.44 21.45 0.25 -54.54 16 16 Si 0.96 44.49 29.54 68.60 2.03 46.52 16 17 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.28 -12.98 7.11 99.48 0.71 -12.28 16 19 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 20 C -0.10 -4.51 5.23 30.61 0.16 -4.35 16 21 C -0.07 -2.48 4.45 29.74 0.13 -2.35 16 22 H 0.07 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.06 1.44 8.09 -2.39 -0.02 1.42 16 24 H 0.08 1.50 8.09 -2.39 -0.02 1.49 16 25 H 0.15 3.10 8.06 -2.91 -0.02 3.07 16 26 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 27 H 0.07 1.51 6.69 -2.39 -0.02 1.50 16 28 H 0.08 1.45 8.08 -2.39 -0.02 1.43 16 29 H 0.11 4.15 8.05 -2.91 -0.02 4.13 16 30 H 0.04 1.87 8.11 -2.39 -0.02 1.85 16 31 H 0.06 3.70 6.34 -2.39 -0.02 3.68 16 32 H 0.26 14.78 8.31 -92.71 -0.77 14.01 16 33 H 0.05 1.99 8.10 -2.39 -0.02 1.97 16 34 H 0.06 2.37 8.12 -2.39 -0.02 2.35 16 35 H 0.09 2.65 7.17 -2.38 -0.02 2.63 16 36 H 0.07 2.37 8.11 -2.39 -0.02 2.36 16 Total: -1.00 -64.54 287.05 5.70 -58.84 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: 1.04 Total: 12.24 kcal Atomic # 6 Polarization: -65.45 SS G_CDS: 2.39 Total: -63.06 kcal Atomic # 7 Polarization: -54.79 SS G_CDS: 0.25 Total: -54.54 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.52 kcal Total: -64.54 5.70 -58.84 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259897988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.622 kcal (2) G-P(sol) polarization free energy of solvation -64.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.922 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.840 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.219 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds