Wall clock time and date at job start Mon Mar 30 2020 03:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36838 * 125.06234 * 2 1 4 4 C 1.34235 * 109.93128 * 180.02562 * 3 2 1 5 5 C 1.46482 * 106.99515 * 0.02562 * 4 3 2 6 6 C 1.39634 * 134.02731 * 180.24400 * 5 4 3 7 7 C 1.36627 * 119.76610 * 180.20433 * 6 5 4 8 8 C 1.50697 * 119.73939 * 179.77735 * 7 6 5 9 9 H 1.08996 * 109.47188 * 19.72673 * 8 7 6 10 10 N 1.46905 * 109.47125 * 139.72451 * 8 7 6 11 11 C 1.50703 * 109.47094 * 259.72379 * 8 7 6 12 12 H 1.08000 * 119.99934 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99701 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00608 * 0.02562 * 13 11 8 15 15 Si 1.86806 * 119.99602 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47056 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47251 * 120.00186 * 15 13 11 18 18 H 1.48503 * 109.46573 * 239.99823 * 15 13 11 19 19 C 1.38837 * 120.52214 * 359.50053 * 7 6 5 20 20 C 1.37743 * 120.66912 * 0.27650 * 19 7 6 21 21 C 1.37684 * 125.06579 * 180.02562 * 2 1 3 22 22 H 1.08997 * 109.47333 * 269.97382 * 1 2 3 23 23 H 1.09003 * 109.47191 * 29.97344 * 1 2 3 24 24 H 1.09002 * 109.47343 * 149.97374 * 1 2 3 25 25 H 1.08000 * 125.03351 * 0.02562 * 3 2 1 26 26 H 1.08002 * 126.50134 * 180.02562 * 4 3 2 27 27 H 1.08004 * 120.11896 * 359.95964 * 6 5 4 28 28 H 1.00901 * 110.99869 * 296.04907 * 10 8 7 29 29 H 1.00896 * 110.99543 * 60.00030 * 10 8 7 30 30 H 0.96991 * 120.00497 * 180.02562 * 14 13 11 31 31 H 1.08000 * 119.66325 * 180.25455 * 19 7 6 32 32 H 1.08006 * 120.11206 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2510 1.1201 0.0000 4 6 3.5468 0.7697 -0.0006 5 6 3.5945 -0.6944 -0.0016 6 6 4.6295 -1.6317 0.0018 7 6 4.3362 -2.9661 -0.0047 8 6 5.4537 -3.9771 -0.0062 9 1 6.3712 -3.5050 0.3451 10 7 5.1056 -5.0931 0.8835 11 6 5.6598 -4.4960 -1.4059 12 1 5.0435 -4.1300 -2.2138 13 6 6.6359 -5.4373 -1.6554 14 7 7.3867 -5.8827 -0.6718 15 14 6.8918 -6.0800 -3.3906 16 1 5.9255 -5.4252 -4.3085 17 1 8.2771 -5.7773 -3.8313 18 1 6.6758 -7.5491 -3.4111 19 6 3.0167 -3.3980 -0.0042 20 6 1.9804 -2.4906 -0.0029 21 6 2.2560 -1.1269 -0.0005 22 1 -0.3634 -0.0005 1.0276 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3634 -0.8897 -0.5142 25 1 1.8833 2.1355 0.0004 26 1 4.3936 1.4400 -0.0003 27 1 5.6583 -1.3030 0.0055 28 1 5.0252 -4.7815 1.8399 29 1 4.2578 -5.5474 0.5788 30 1 8.0736 -6.5446 -0.8474 31 1 2.8007 -4.4562 -0.0053 32 1 0.9573 -2.8366 -0.0030 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259917426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:01 Heat of formation + Delta-G solvation = 65.832633 kcal Electronic energy + Delta-G solvation = -15318.505178 eV Core-core repulsion = 12858.529124 eV Total energy + Delta-G solvation = -2459.976054 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.84463 -37.24211 -33.83515 -32.52604 -31.34973 -29.54046 -28.02898 -26.34079 -25.44201 -22.36346 -22.00994 -19.86560 -19.53455 -16.77629 -16.34323 -15.67713 -15.11614 -14.84470 -14.36394 -13.75628 -13.60240 -13.45916 -12.79775 -12.68904 -12.39643 -12.20399 -12.06220 -11.45505 -11.16121 -10.83324 -10.78208 -10.46089 -10.20794 -9.68377 -9.23139 -8.96854 -8.35478 -7.55925 -7.14573 -6.91147 -5.79544 -3.93671 1.67182 2.29811 3.06990 3.08102 3.37718 3.45731 3.50280 4.48649 4.64294 4.77551 4.98890 5.13819 5.20250 5.33192 5.45094 5.52287 5.81773 5.92027 6.02423 6.19746 6.33714 6.45664 6.51832 6.63574 7.11996 7.19631 7.26351 7.31427 7.62653 7.73804 7.81057 7.99724 8.30129 8.73420 9.10708 9.24936 9.74498 11.24638 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.040258 B = 0.006315 C = 0.006247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.350394 B = 4432.649851 C = 4481.014405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.496 5.496 3 C 0.034 3.966 4 C -0.204 4.204 5 C -0.108 4.108 6 C -0.079 4.079 7 C -0.098 4.098 8 C 0.256 3.744 9 H 0.045 0.955 10 N -0.810 5.810 11 C -0.526 4.526 12 H 0.053 0.947 13 C 0.082 3.918 14 N -0.849 5.849 15 Si 0.882 3.118 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.285 1.285 19 C -0.087 4.087 20 C -0.141 4.141 21 C 0.077 3.923 22 H 0.062 0.938 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.160 0.840 26 H 0.141 0.859 27 H 0.117 0.883 28 H 0.298 0.702 29 H 0.316 0.684 30 H 0.254 0.746 31 H 0.121 0.879 32 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.218 11.161 2.408 16.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 N -0.181 5.181 3 C -0.090 4.090 4 C -0.230 4.230 5 C -0.112 4.112 6 C -0.098 4.098 7 C -0.101 4.101 8 C 0.146 3.854 9 H 0.063 0.937 10 N -0.335 5.335 11 C -0.565 4.565 12 H 0.072 0.928 13 C -0.124 4.124 14 N -0.484 5.484 15 Si 0.710 3.290 16 H -0.199 1.199 17 H -0.211 1.211 18 H -0.211 1.211 19 C -0.107 4.107 20 C -0.162 4.162 21 C -0.026 4.026 22 H 0.080 0.920 23 H 0.095 0.905 24 H 0.095 0.905 25 H 0.177 0.823 26 H 0.159 0.841 27 H 0.135 0.865 28 H 0.108 0.892 29 H 0.128 0.872 30 H 0.064 0.936 31 H 0.138 0.862 32 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -11.703 10.717 2.238 16.025 hybrid contribution -0.879 0.255 -0.859 1.255 sum -12.582 10.972 1.379 16.751 Atomic orbital electron populations 1.21796 0.78149 1.03580 1.02289 1.43671 1.05227 1.04492 1.64733 1.21600 0.90628 0.90655 1.06141 1.21657 0.95638 0.93346 1.12367 1.19255 0.92352 0.93140 1.06448 1.20213 0.97483 0.91757 1.00340 1.21229 0.96787 0.95767 0.96316 1.18150 0.89159 0.84654 0.93395 0.93727 1.59226 1.39950 1.31585 1.02779 1.20908 1.18767 1.24879 0.91978 0.92843 1.24953 0.95491 0.95977 0.95953 1.70116 1.19533 1.28555 1.30165 0.86727 0.77878 0.78717 0.85713 1.19940 1.21128 1.21113 1.20723 0.92002 0.98678 0.99259 1.19884 0.98781 0.89218 1.08268 1.18178 0.90069 0.88023 1.06367 0.91956 0.90535 0.90512 0.82275 0.84132 0.86484 0.89237 0.87166 0.93607 0.86159 0.87470 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.80 11.03 59.84 0.66 1.46 16 2 N -0.50 -7.06 3.18 -121.81 -0.39 -7.44 16 3 C 0.03 0.45 11.29 -16.73 -0.19 0.26 16 4 C -0.20 -3.18 11.08 -37.67 -0.42 -3.60 16 5 C -0.11 -2.04 6.37 -105.14 -0.67 -2.71 16 6 C -0.08 -1.63 9.65 -39.64 -0.38 -2.02 16 7 C -0.10 -2.14 4.85 -104.98 -0.51 -2.65 16 8 C 0.26 6.46 2.84 -70.01 -0.20 6.26 16 9 H 0.04 1.24 7.97 -51.93 -0.41 0.82 16 10 N -0.81 -19.25 8.36 -6.65 -0.06 -19.30 16 11 C -0.53 -14.73 8.70 -34.44 -0.30 -15.03 16 12 H 0.05 1.52 7.74 -52.49 -0.41 1.12 16 13 C 0.08 2.34 5.39 -17.82 -0.10 2.24 16 14 N -0.85 -25.04 12.77 55.43 0.71 -24.33 16 15 Si 0.88 21.69 29.54 -169.99 -5.02 16.67 16 16 H -0.27 -6.73 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 18 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 19 C -0.09 -1.72 9.25 -39.54 -0.37 -2.08 16 20 C -0.14 -2.48 9.96 -39.43 -0.39 -2.87 16 21 C 0.08 1.37 6.81 -83.99 -0.57 0.80 16 22 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 23 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 24 H 0.08 0.70 8.10 -51.93 -0.42 0.28 16 25 H 0.16 1.44 8.06 -52.49 -0.42 1.02 16 26 H 0.14 1.87 8.06 -52.49 -0.42 1.45 16 27 H 0.12 2.36 8.01 -52.48 -0.42 1.94 16 28 H 0.30 6.37 9.06 -39.29 -0.36 6.02 16 29 H 0.32 7.10 7.31 -39.29 -0.29 6.81 16 30 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 31 H 0.12 2.27 6.63 -52.49 -0.35 1.92 16 32 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 LS Contribution 275.97 15.07 4.16 4.16 Total: -1.00 -32.14 275.97 -7.93 -40.07 By element: Atomic # 1 Polarization: 14.01 SS G_CDS: -3.90 Total: 10.11 kcal Atomic # 6 Polarization: -16.50 SS G_CDS: -3.43 Total: -19.93 kcal Atomic # 7 Polarization: -51.34 SS G_CDS: 0.27 Total: -51.07 kcal Atomic # 14 Polarization: 21.69 SS G_CDS: -5.02 Total: 16.67 kcal Total LS contribution 4.16 Total: 4.16 kcal Total: -32.14 -7.93 -40.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259917426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.907 kcal (2) G-P(sol) polarization free energy of solvation -32.143 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.074 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds