Wall clock time and date at job start Mon Mar 30 2020 03:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46494 * 1 3 3 C 1.36838 * 125.06234 * 2 1 4 4 C 1.34235 * 109.93128 * 180.02562 * 3 2 1 5 5 C 1.46482 * 106.99515 * 0.02562 * 4 3 2 6 6 C 1.39634 * 134.02731 * 180.24400 * 5 4 3 7 7 C 1.36627 * 119.76610 * 180.20433 * 6 5 4 8 8 C 1.50697 * 119.73939 * 179.77735 * 7 6 5 9 9 H 1.08996 * 109.47188 * 19.72673 * 8 7 6 10 10 N 1.46905 * 109.47125 * 139.72451 * 8 7 6 11 11 C 1.50703 * 109.47094 * 259.72379 * 8 7 6 12 12 H 1.08000 * 119.99934 * 0.02562 * 11 8 7 13 13 C 1.37875 * 119.99701 * 179.97438 * 11 8 7 14 14 N 1.31513 * 120.00608 * 0.02562 * 13 11 8 15 15 Si 1.86806 * 119.99602 * 180.02562 * 13 11 8 16 16 H 1.48497 * 109.47056 * 359.97438 * 15 13 11 17 17 H 1.48494 * 109.47251 * 120.00186 * 15 13 11 18 18 H 1.48503 * 109.46573 * 239.99823 * 15 13 11 19 19 C 1.38837 * 120.52214 * 359.50053 * 7 6 5 20 20 C 1.37743 * 120.66912 * 0.27650 * 19 7 6 21 21 C 1.37684 * 125.06579 * 180.02562 * 2 1 3 22 22 H 1.08997 * 109.47333 * 269.97382 * 1 2 3 23 23 H 1.09003 * 109.47191 * 29.97344 * 1 2 3 24 24 H 1.09002 * 109.47343 * 149.97374 * 1 2 3 25 25 H 1.08000 * 125.03351 * 0.02562 * 3 2 1 26 26 H 1.08002 * 126.50134 * 180.02562 * 4 3 2 27 27 H 1.08004 * 120.11896 * 359.95964 * 6 5 4 28 28 H 1.00901 * 110.99869 * 296.04907 * 10 8 7 29 29 H 1.00896 * 110.99543 * 60.00030 * 10 8 7 30 30 H 0.96991 * 120.00497 * 180.02562 * 14 13 11 31 31 H 1.08000 * 119.66325 * 180.25455 * 19 7 6 32 32 H 1.08006 * 120.11206 * 179.97438 * 20 19 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.2510 1.1201 0.0000 4 6 3.5468 0.7697 -0.0006 5 6 3.5945 -0.6944 -0.0016 6 6 4.6295 -1.6317 0.0018 7 6 4.3362 -2.9661 -0.0047 8 6 5.4537 -3.9771 -0.0062 9 1 6.3712 -3.5050 0.3451 10 7 5.1056 -5.0931 0.8835 11 6 5.6598 -4.4960 -1.4059 12 1 5.0435 -4.1300 -2.2138 13 6 6.6359 -5.4373 -1.6554 14 7 7.3867 -5.8827 -0.6718 15 14 6.8918 -6.0800 -3.3906 16 1 5.9255 -5.4252 -4.3085 17 1 8.2771 -5.7773 -3.8313 18 1 6.6758 -7.5491 -3.4111 19 6 3.0167 -3.3980 -0.0042 20 6 1.9804 -2.4906 -0.0029 21 6 2.2560 -1.1269 -0.0005 22 1 -0.3634 -0.0005 1.0276 23 1 -0.3634 0.8902 -0.5134 24 1 -0.3634 -0.8897 -0.5142 25 1 1.8833 2.1355 0.0004 26 1 4.3936 1.4400 -0.0003 27 1 5.6583 -1.3030 0.0055 28 1 5.0252 -4.7815 1.8399 29 1 4.2578 -5.5474 0.5788 30 1 8.0736 -6.5446 -0.8474 31 1 2.8007 -4.4562 -0.0053 32 1 0.9573 -2.8366 -0.0030 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259917426.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:01 Heat of formation + Delta-G solvation = 44.978792 kcal Electronic energy + Delta-G solvation = -15319.409468 eV Core-core repulsion = 12858.529124 eV Total energy + Delta-G solvation = -2460.880344 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.08978 -38.77238 -35.64643 -33.71703 -33.34741 -30.96691 -29.42061 -28.03497 -26.87492 -24.08994 -23.40997 -21.18724 -21.00749 -18.48830 -17.88623 -17.09775 -16.61172 -16.28041 -16.11162 -15.47758 -15.00162 -14.86102 -14.30241 -13.94346 -13.68744 -13.44479 -13.33268 -13.13530 -12.94526 -12.71493 -12.44624 -12.12214 -11.80834 -11.53199 -11.11288 -10.54696 -10.45084 -9.06180 -8.76216 -8.41361 -7.94788 -6.17244 0.30046 0.81019 1.42085 1.43616 1.55083 1.88371 2.03282 2.47796 3.08046 3.27317 3.84354 3.98027 4.08236 4.23747 4.35125 4.50076 4.50860 4.65624 4.67308 4.74217 4.87000 4.99793 5.12871 5.19853 5.41076 5.60851 5.78224 5.89684 5.91378 6.03505 6.22572 6.40602 6.55746 6.69429 7.14186 7.30163 7.54853 9.07761 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.040258 B = 0.006315 C = 0.006247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 695.350394 B = 4432.649851 C = 4481.014405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.074 3.926 2 N -0.492 5.492 3 C 0.065 3.935 4 C -0.240 4.240 5 C -0.130 4.130 6 C -0.102 4.102 7 C -0.118 4.118 8 C 0.263 3.737 9 H 0.005 0.995 10 N -0.818 5.818 11 C -0.539 4.539 12 H 0.042 0.958 13 C 0.034 3.966 14 N -0.882 5.882 15 Si 0.949 3.051 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.278 1.278 19 C -0.107 4.107 20 C -0.126 4.126 21 C 0.064 3.936 22 H 0.079 0.921 23 H 0.109 0.891 24 H 0.080 0.920 25 H 0.212 0.788 26 H 0.154 0.846 27 H 0.103 0.897 28 H 0.310 0.690 29 H 0.323 0.677 30 H 0.255 0.745 31 H 0.122 0.878 32 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.046 12.857 1.805 19.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.176 5.176 3 C -0.060 4.060 4 C -0.264 4.264 5 C -0.135 4.135 6 C -0.121 4.121 7 C -0.121 4.121 8 C 0.153 3.847 9 H 0.023 0.977 10 N -0.345 5.345 11 C -0.578 4.578 12 H 0.060 0.940 13 C -0.169 4.169 14 N -0.518 5.518 15 Si 0.774 3.226 16 H -0.198 1.198 17 H -0.206 1.206 18 H -0.204 1.204 19 C -0.126 4.126 20 C -0.146 4.146 21 C -0.042 4.042 22 H 0.097 0.903 23 H 0.127 0.873 24 H 0.099 0.901 25 H 0.229 0.771 26 H 0.172 0.828 27 H 0.121 0.879 28 H 0.121 0.879 29 H 0.136 0.864 30 H 0.064 0.936 31 H 0.140 0.860 32 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -14.565 12.425 1.636 19.214 hybrid contribution -0.121 -0.099 -0.625 0.645 sum -14.686 12.326 1.011 19.200 Atomic orbital electron populations 1.22195 0.74906 1.05529 1.04018 1.44072 1.07180 1.03437 1.62931 1.22379 0.89578 0.92324 1.01734 1.21942 0.97773 0.91763 1.14962 1.19601 0.92614 0.94930 1.06357 1.20193 0.97744 0.92187 1.01982 1.20859 0.96811 0.95362 0.99100 1.17772 0.89118 0.85579 0.92248 0.97732 1.59031 1.40480 1.31590 1.03372 1.21156 1.18655 1.24930 0.93070 0.94019 1.25693 0.95206 0.96237 0.99813 1.70239 1.20137 1.29197 1.32202 0.85685 0.77782 0.78157 0.80949 1.19754 1.20583 1.20398 1.20704 0.91576 0.99317 1.01041 1.20128 0.99650 0.89030 1.05808 1.18340 0.90387 0.89128 1.06303 0.90271 0.87261 0.90082 0.77112 0.82803 0.87885 0.87929 0.86359 0.93560 0.85986 0.84095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.02 11.03 127.77 1.41 2.43 16 2 N -0.49 -12.01 3.18 -539.29 -1.71 -13.72 16 3 C 0.07 1.44 11.29 83.00 0.94 2.38 16 4 C -0.24 -7.03 11.08 23.51 0.26 -6.77 16 5 C -0.13 -4.94 6.37 -20.20 -0.13 -5.07 16 6 C -0.10 -4.47 9.65 22.23 0.21 -4.25 16 7 C -0.12 -5.43 4.85 -20.10 -0.10 -5.53 16 8 C 0.26 14.02 2.84 43.42 0.12 14.14 16 9 H 0.00 0.29 7.97 -2.39 -0.02 0.27 16 10 N -0.82 -40.49 8.36 -174.95 -1.46 -41.95 16 11 C -0.54 -31.36 8.70 25.60 0.22 -31.13 16 12 H 0.04 2.46 7.74 -2.91 -0.02 2.44 16 13 C 0.03 1.95 5.39 84.65 0.46 2.41 16 14 N -0.88 -53.50 12.77 21.45 0.27 -53.22 16 15 Si 0.95 45.45 29.54 68.60 2.03 47.47 16 16 H -0.27 -12.87 7.11 99.48 0.71 -12.16 16 17 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 19 C -0.11 -4.27 9.25 22.30 0.21 -4.06 16 20 C -0.13 -4.23 9.96 22.37 0.22 -4.01 16 21 C 0.06 2.15 6.81 39.03 0.27 2.41 16 22 H 0.08 0.89 8.14 -2.39 -0.02 0.88 16 23 H 0.11 0.85 8.14 -2.39 -0.02 0.83 16 24 H 0.08 1.09 8.10 -2.39 -0.02 1.07 16 25 H 0.21 2.42 8.06 -2.91 -0.02 2.40 16 26 H 0.15 3.91 8.06 -2.91 -0.02 3.89 16 27 H 0.10 4.58 8.01 -2.91 -0.02 4.55 16 28 H 0.31 13.86 9.06 -89.69 -0.81 13.04 16 29 H 0.32 15.00 7.31 -89.70 -0.66 14.35 16 30 H 0.26 14.69 8.31 -92.71 -0.77 13.92 16 31 H 0.12 4.68 6.63 -2.91 -0.02 4.66 16 32 H 0.14 3.68 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -72.22 275.97 2.88 -69.33 By element: Atomic # 1 Polarization: 29.47 SS G_CDS: -0.33 Total: 29.14 kcal Atomic # 6 Polarization: -41.14 SS G_CDS: 4.09 Total: -37.05 kcal Atomic # 7 Polarization: -106.00 SS G_CDS: -2.90 Total: -108.90 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -72.22 2.88 -69.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259917426.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.311 kcal (2) G-P(sol) polarization free energy of solvation -72.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.333 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds