Wall clock time and date at job start Mon Mar 30 2020 03:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.38255 * 119.99969 * 264.72760 * 11 10 9 13 13 C 1.38218 * 119.99779 * 179.78708 * 12 11 10 14 14 C 1.38260 * 119.99940 * 0.45944 * 13 12 11 15 15 C 1.38209 * 119.99804 * 359.77434 * 14 13 12 16 16 C 1.38209 * 119.99852 * 84.99754 * 11 10 9 17 17 C 1.50697 * 120.00206 * 359.97438 * 16 11 10 18 18 C 1.53780 * 113.61589 * 217.49562 * 17 16 11 19 19 C 1.53782 * 87.08254 * 220.01778 * 18 17 16 20 20 C 1.53778 * 87.08037 * 25.43070 * 19 18 17 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 1.07998 * 120.00330 * 359.97438 * 12 11 10 27 27 H 1.08002 * 120.00067 * 180.25311 * 13 12 11 28 28 H 1.07994 * 119.99697 * 179.79092 * 14 13 12 29 29 H 1.08004 * 119.99622 * 179.97438 * 15 14 13 30 30 H 1.08999 * 112.85007 * 348.80275 * 17 16 11 31 31 H 1.09000 * 113.61778 * 334.56832 * 18 17 16 32 32 H 1.09003 * 113.61381 * 105.46776 * 18 17 16 33 33 H 1.09004 * 113.61232 * 270.88239 * 19 18 17 34 34 H 1.08996 * 113.69257 * 139.99591 * 19 18 17 35 35 H 1.09003 * 113.61482 * 220.01633 * 20 19 18 36 36 H 1.09003 * 113.61399 * 89.11861 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.2417 -5.6205 1.1937 13 6 0.5467 -6.8153 1.1947 14 6 0.1099 -7.3619 0.0022 15 6 0.3640 -6.7111 -1.1904 16 6 1.0553 -5.5138 -1.1909 17 6 1.3325 -4.8045 -2.4913 18 6 0.1796 -4.9019 -3.5042 19 6 1.2531 -5.0880 -4.5894 20 6 2.1672 -5.6350 -3.4804 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8718 -3.6044 -0.8895 25 1 2.8718 -3.6044 0.8904 26 1 1.5867 -5.1958 2.1248 27 1 0.3479 -7.3236 2.1266 28 1 -0.4302 -8.2971 0.0027 29 1 0.0230 -7.1383 -2.1219 30 1 1.7059 -3.7904 -2.3490 31 1 -0.4539 -5.7775 -3.3619 32 1 -0.3902 -3.9784 -3.6074 33 1 1.6039 -4.1509 -5.0218 34 1 0.9896 -5.8296 -5.3435 35 1 3.2022 -5.3034 -3.5644 36 1 2.0773 -6.7111 -3.3315 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259972933.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:36 Heat of formation + Delta-G solvation = 18.786926 kcal Electronic energy + Delta-G solvation = -15695.692018 eV Core-core repulsion = 13337.216252 eV Total energy + Delta-G solvation = -2358.475765 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.81814 -37.40546 -34.10183 -32.10135 -30.61533 -28.85240 -25.39680 -25.34591 -24.70953 -22.07078 -21.41907 -19.78820 -18.80020 -16.54654 -16.14780 -15.46526 -14.68170 -14.49206 -14.45679 -13.75438 -13.02622 -12.74174 -12.57988 -12.29771 -12.19998 -12.03645 -11.62686 -11.26687 -11.09438 -10.87436 -10.75402 -10.55144 -10.14645 -10.14345 -9.87288 -9.72566 -9.56785 -9.06182 -8.34408 -8.29881 -7.92993 -5.98298 -4.01453 1.80291 1.88085 3.33569 3.38149 3.40436 4.18167 4.46988 4.89922 4.96953 4.99114 5.27468 5.36334 5.36913 5.37874 5.46490 5.59450 5.85917 5.89627 5.93648 5.97046 6.08932 6.14967 6.26424 6.31899 6.40569 6.48728 6.60805 6.69739 6.74718 6.90794 7.02212 7.05766 7.27781 7.50791 7.70709 7.85030 8.02400 8.42317 9.05512 9.62387 11.12494 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.023529 B = 0.007514 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.749954 B = 3725.330540 C = 4491.509293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.058 3.942 3 Si 0.891 3.109 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.032 3.968 10 C -0.082 4.082 11 C -0.054 4.054 12 C -0.121 4.121 13 C -0.126 4.126 14 C -0.140 4.140 15 C -0.118 4.118 16 C -0.069 4.069 17 C -0.076 4.076 18 C -0.135 4.135 19 C -0.142 4.142 20 C -0.132 4.132 21 H 0.261 0.739 22 H 0.016 0.984 23 H 0.020 0.980 24 H 0.061 0.939 25 H 0.057 0.943 26 H 0.118 0.882 27 H 0.113 0.887 28 H 0.112 0.888 29 H 0.114 0.886 30 H 0.114 0.886 31 H 0.079 0.921 32 H 0.070 0.930 33 H 0.080 0.920 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.480 -12.924 -4.344 13.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.561 4.561 8 H 0.073 0.927 9 C -0.005 4.005 10 C -0.119 4.119 11 C -0.054 4.054 12 C -0.140 4.140 13 C -0.144 4.144 14 C -0.158 4.158 15 C -0.136 4.136 16 C -0.069 4.069 17 C -0.094 4.094 18 C -0.172 4.172 19 C -0.179 4.179 20 C -0.169 4.169 21 H 0.070 0.930 22 H 0.034 0.966 23 H 0.038 0.962 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.136 0.864 27 H 0.131 0.869 28 H 0.130 0.870 29 H 0.132 0.868 30 H 0.132 0.868 31 H 0.097 0.903 32 H 0.089 0.911 33 H 0.099 0.901 34 H 0.081 0.919 35 H 0.084 0.916 36 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 1.323 -12.799 -4.348 13.582 hybrid contribution 0.309 0.940 0.151 1.001 sum 1.632 -11.859 -4.197 12.685 Atomic orbital electron populations 1.69964 1.06023 1.26657 1.50598 1.25010 0.94818 0.99146 0.95332 0.86685 0.79607 0.83248 0.78616 1.20245 1.21297 1.20254 1.21227 0.92981 0.91022 1.50893 0.92716 1.19061 0.93621 0.90291 0.97561 1.20856 0.98441 0.91451 1.01153 1.20244 0.96778 0.96227 0.92151 1.21068 0.99759 0.95283 0.97840 1.21022 0.99370 0.96462 0.97577 1.20925 1.01945 1.00081 0.92815 1.20879 0.99669 0.95513 0.97575 1.19585 0.98252 0.94698 0.94397 1.21657 0.97189 1.00362 0.90187 1.23004 0.96363 1.02214 0.95601 1.22816 0.97660 1.01126 0.96339 1.22972 0.98504 0.99502 0.95946 0.92963 0.96602 0.96209 0.92040 0.92463 0.86389 0.86884 0.86992 0.86770 0.86820 0.90295 0.91118 0.90132 0.91943 0.91596 0.90459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.98 13.29 55.43 0.74 -26.24 16 2 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 7 C -0.52 -14.78 9.11 -34.44 -0.31 -15.10 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 9 C 0.03 0.82 4.79 -27.88 -0.13 0.69 16 10 C -0.08 -1.73 4.58 -27.89 -0.13 -1.86 16 11 C -0.05 -1.03 5.13 -104.63 -0.54 -1.57 16 12 C -0.12 -2.12 9.68 -39.58 -0.38 -2.50 16 13 C -0.13 -1.92 10.05 -39.58 -0.40 -2.31 16 14 C -0.14 -2.02 10.05 -39.58 -0.40 -2.42 16 15 C -0.12 -1.81 8.61 -39.58 -0.34 -2.15 16 16 C -0.07 -1.21 5.29 -104.63 -0.55 -1.76 16 17 C -0.08 -1.25 3.43 -90.96 -0.31 -1.56 16 18 C -0.13 -1.96 7.46 -25.92 -0.19 -2.15 16 19 C -0.14 -1.79 8.08 -25.92 -0.21 -2.00 16 20 C -0.13 -1.77 7.55 -25.92 -0.20 -1.97 16 21 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 22 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 23 H 0.02 0.54 7.46 -51.93 -0.39 0.16 16 24 H 0.06 1.26 6.64 -51.93 -0.34 0.91 16 25 H 0.06 1.18 8.05 -51.93 -0.42 0.76 16 26 H 0.12 1.94 8.06 -52.49 -0.42 1.51 16 27 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 28 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 29 H 0.11 1.50 6.66 -52.48 -0.35 1.15 16 30 H 0.11 2.16 5.48 -51.93 -0.28 1.87 16 31 H 0.08 1.05 6.31 -51.93 -0.33 0.72 16 32 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 33 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.08 0.97 7.72 -51.93 -0.40 0.57 16 LS Contribution 292.66 15.07 4.41 4.41 Total: -1.00 -29.98 292.66 -9.50 -39.49 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: -5.44 Total: 0.75 kcal Atomic # 6 Polarization: -30.88 SS G_CDS: -4.19 Total: -35.07 kcal Atomic # 7 Polarization: -26.98 SS G_CDS: 0.74 Total: -26.24 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.98 -9.50 -39.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259972933.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.272 kcal (2) G-P(sol) polarization free energy of solvation -29.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.787 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds