Wall clock time and date at job start Mon Mar 30 2020 03:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86797 * 120.00353 * 2 1 4 4 H 1.48506 * 109.47294 * 240.00246 * 3 2 1 5 5 H 1.48503 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47431 * 119.99843 * 3 2 1 7 7 C 1.37880 * 119.99913 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00010 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99861 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47212 * 179.97438 * 9 7 2 11 11 C 1.50697 * 109.47466 * 179.97438 * 10 9 7 12 12 C 1.38255 * 119.99969 * 264.72760 * 11 10 9 13 13 C 1.38218 * 119.99779 * 179.78708 * 12 11 10 14 14 C 1.38260 * 119.99940 * 0.45944 * 13 12 11 15 15 C 1.38209 * 119.99804 * 359.77434 * 14 13 12 16 16 C 1.38209 * 119.99852 * 84.99754 * 11 10 9 17 17 C 1.50697 * 120.00206 * 359.97438 * 16 11 10 18 18 C 1.53780 * 113.61589 * 217.49562 * 17 16 11 19 19 C 1.53782 * 87.08254 * 220.01778 * 18 17 16 20 20 C 1.53778 * 87.08037 * 25.43070 * 19 18 17 21 21 H 0.97002 * 119.99768 * 359.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99817 * 9 7 2 23 23 H 1.09001 * 109.47380 * 59.99905 * 9 7 2 24 24 H 1.09002 * 109.47153 * 299.99998 * 10 9 7 25 25 H 1.08998 * 109.47533 * 59.99628 * 10 9 7 26 26 H 1.07998 * 120.00330 * 359.97438 * 12 11 10 27 27 H 1.08002 * 120.00067 * 180.25311 * 13 12 11 28 28 H 1.07994 * 119.99697 * 179.79092 * 14 13 12 29 29 H 1.08004 * 119.99622 * 179.97438 * 15 14 13 30 30 H 1.08999 * 112.85007 * 348.80275 * 17 16 11 31 31 H 1.09000 * 113.61778 * 334.56832 * 18 17 16 32 32 H 1.09003 * 113.61381 * 105.46776 * 18 17 16 33 33 H 1.09004 * 113.61232 * 270.88239 * 19 18 17 34 34 H 1.08996 * 113.69257 * 139.99591 * 19 18 17 35 35 H 1.09003 * 113.61482 * 220.01633 * 20 19 18 36 36 H 1.09003 * 113.61399 * 89.11861 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6963 -1.2126 5 1 1.2842 2.7464 -0.0006 6 1 3.1030 1.6964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2451 -3.6621 0.0005 11 6 1.4916 -4.9672 0.0012 12 6 1.2417 -5.6205 1.1937 13 6 0.5467 -6.8153 1.1947 14 6 0.1099 -7.3619 0.0022 15 6 0.3640 -6.7111 -1.1904 16 6 1.0553 -5.5138 -1.1909 17 6 1.3325 -4.8045 -2.4913 18 6 0.1796 -4.9019 -3.5042 19 6 1.2531 -5.0880 -4.5894 20 6 2.1672 -5.6350 -3.4804 21 1 -0.4850 0.8401 0.0004 22 1 0.6239 -2.5567 0.8903 23 1 0.6246 -2.5571 -0.8897 24 1 2.8718 -3.6044 -0.8895 25 1 2.8718 -3.6044 0.8904 26 1 1.5867 -5.1958 2.1248 27 1 0.3479 -7.3236 2.1266 28 1 -0.4302 -8.2971 0.0027 29 1 0.0230 -7.1383 -2.1219 30 1 1.7059 -3.7904 -2.3490 31 1 -0.4539 -5.7775 -3.3619 32 1 -0.3902 -3.9784 -3.6074 33 1 1.6039 -4.1509 -5.0218 34 1 0.9896 -5.8296 -5.3435 35 1 3.2022 -5.3034 -3.5644 36 1 2.0773 -6.7111 -3.3315 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259972933.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:36 Heat of formation + Delta-G solvation = 4.487005 kcal Electronic energy + Delta-G solvation = -15696.312109 eV Core-core repulsion = 13337.216252 eV Total energy + Delta-G solvation = -2359.095856 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.06916 -38.59631 -35.99497 -33.99900 -31.84264 -30.59478 -27.05983 -26.46788 -26.16348 -23.67967 -22.87423 -21.27952 -19.97618 -18.56995 -17.54130 -16.77281 -16.54393 -15.90374 -15.73683 -14.96227 -14.64375 -14.38344 -14.15852 -13.91124 -13.42979 -13.30077 -13.17535 -12.84878 -12.77466 -12.50890 -12.31890 -12.01802 -11.75981 -11.58112 -11.39837 -11.28290 -11.04586 -10.95991 -10.56674 -9.57778 -9.28538 -8.20631 -6.33165 0.55519 0.58926 1.37922 1.41244 1.49240 2.39340 2.92303 3.11561 3.75271 3.79865 3.89470 4.07489 4.15228 4.18733 4.28743 4.34488 4.47807 4.68514 4.79591 4.82535 4.87180 4.87646 4.97175 5.03566 5.09294 5.13607 5.26144 5.29600 5.36941 5.46991 5.57642 5.60469 5.68255 5.77843 5.83622 6.01039 6.20602 6.25859 6.83173 7.36024 8.90504 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.023529 B = 0.007514 C = 0.006232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.749954 B = 3725.330540 C = 4491.509293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.002 3.998 3 Si 0.964 3.036 4 H -0.266 1.266 5 H -0.282 1.282 6 H -0.266 1.266 7 C -0.546 4.546 8 H 0.060 0.940 9 C 0.045 3.955 10 C -0.065 4.065 11 C -0.091 4.091 12 C -0.138 4.138 13 C -0.128 4.128 14 C -0.130 4.130 15 C -0.121 4.121 16 C -0.080 4.080 17 C -0.092 4.092 18 C -0.135 4.135 19 C -0.130 4.130 20 C -0.121 4.121 21 H 0.264 0.736 22 H -0.018 1.018 23 H -0.008 1.008 24 H 0.061 0.939 25 H 0.055 0.945 26 H 0.117 0.883 27 H 0.143 0.857 28 H 0.150 0.850 29 H 0.142 0.858 30 H 0.074 0.926 31 H 0.097 0.903 32 H 0.048 0.952 33 H 0.075 0.925 34 H 0.090 0.910 35 H 0.065 0.935 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.760 -14.645 -5.015 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.196 4.196 3 Si 0.788 3.212 4 H -0.191 1.191 5 H -0.207 1.207 6 H -0.191 1.191 7 C -0.584 4.584 8 H 0.078 0.922 9 C 0.008 3.992 10 C -0.102 4.102 11 C -0.091 4.091 12 C -0.156 4.156 13 C -0.146 4.146 14 C -0.148 4.148 15 C -0.138 4.138 16 C -0.080 4.080 17 C -0.110 4.110 18 C -0.173 4.173 19 C -0.167 4.167 20 C -0.158 4.158 21 H 0.072 0.928 22 H 0.001 0.999 23 H 0.011 0.989 24 H 0.079 0.921 25 H 0.074 0.926 26 H 0.135 0.865 27 H 0.161 0.839 28 H 0.168 0.832 29 H 0.160 0.840 30 H 0.093 0.907 31 H 0.116 0.884 32 H 0.067 0.933 33 H 0.094 0.906 34 H 0.109 0.891 35 H 0.084 0.916 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 1.618 -14.531 -5.019 15.458 hybrid contribution 0.164 1.418 0.387 1.478 sum 1.782 -13.113 -4.632 14.021 Atomic orbital electron populations 1.70109 1.07848 1.27808 1.51411 1.25981 0.95742 1.03316 0.94600 0.85516 0.78318 0.78062 0.79259 1.19061 1.20717 1.19126 1.21668 0.93508 0.92283 1.50919 0.92163 1.18831 0.93787 0.92137 0.94477 1.20535 0.97362 0.91387 1.00943 1.20152 0.99064 0.95965 0.93943 1.21225 1.00607 0.96523 0.97201 1.21373 0.98262 0.95455 0.99473 1.21410 1.00498 1.00912 0.91948 1.21192 0.98774 0.94520 0.99333 1.19792 0.98530 0.95734 0.93956 1.21642 0.99265 0.99016 0.91121 1.23055 0.96332 1.01957 0.95912 1.22762 0.96048 1.01649 0.96250 1.22946 0.98217 0.99929 0.94685 0.92773 0.99937 0.98934 0.92080 0.92608 0.86534 0.83898 0.83185 0.84045 0.90740 0.88434 0.93305 0.90636 0.89107 0.91602 0.88682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.16 13.29 21.45 0.28 -57.88 16 2 C 0.00 0.09 5.46 84.66 0.46 0.55 16 3 Si 0.96 45.07 29.54 68.60 2.03 47.09 16 4 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 5 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 6 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 7 C -0.55 -32.06 9.11 25.60 0.23 -31.83 16 8 H 0.06 3.38 7.74 -2.91 -0.02 3.35 16 9 C 0.04 2.48 4.79 29.85 0.14 2.63 16 10 C -0.06 -2.91 4.58 29.85 0.14 -2.77 16 11 C -0.09 -3.58 5.13 -19.87 -0.10 -3.69 16 12 C -0.14 -4.81 9.68 22.27 0.22 -4.60 16 13 C -0.13 -3.59 10.05 22.27 0.22 -3.37 16 14 C -0.13 -3.31 10.05 22.27 0.22 -3.09 16 15 C -0.12 -3.38 8.61 22.27 0.19 -3.19 16 16 C -0.08 -2.78 5.29 -19.87 -0.11 -2.89 16 17 C -0.09 -3.08 3.43 -11.01 -0.04 -3.11 16 18 C -0.14 -3.87 7.46 31.12 0.23 -3.64 16 19 C -0.13 -3.04 8.08 31.12 0.25 -2.79 16 20 C -0.12 -3.07 7.55 31.12 0.23 -2.83 16 21 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 22 H -0.02 -1.09 8.14 -2.39 -0.02 -1.11 16 23 H -0.01 -0.46 7.46 -2.39 -0.02 -0.48 16 24 H 0.06 2.67 6.64 -2.39 -0.02 2.65 16 25 H 0.06 2.43 8.05 -2.39 -0.02 2.41 16 26 H 0.12 3.94 8.06 -2.91 -0.02 3.92 16 27 H 0.14 3.10 8.06 -2.91 -0.02 3.08 16 28 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 29 H 0.14 3.14 6.66 -2.91 -0.02 3.12 16 30 H 0.07 3.04 5.48 -2.39 -0.01 3.03 16 31 H 0.10 2.39 6.31 -2.39 -0.02 2.37 16 32 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 34 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 35 H 0.07 1.66 8.14 -2.39 -0.02 1.64 16 36 H 0.09 2.09 7.72 -2.39 -0.02 2.08 16 Total: -1.00 -67.18 292.66 5.66 -61.52 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: 1.04 Total: 13.89 kcal Atomic # 6 Polarization: -66.93 SS G_CDS: 2.30 Total: -64.62 kcal Atomic # 7 Polarization: -58.16 SS G_CDS: 0.28 Total: -57.88 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.09 kcal Total: -67.18 5.66 -61.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259972933.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.008 kcal (2) G-P(sol) polarization free energy of solvation -67.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.169 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds