Wall clock time and date at job start Mon Mar 30 2020 02:55:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47682 * 2 1 4 4 C 1.50703 * 109.47314 * 239.99979 * 2 1 3 5 5 H 1.07998 * 120.00051 * 240.11581 * 4 2 1 6 6 C 1.37876 * 119.99804 * 60.11247 * 4 2 1 7 7 N 1.31520 * 119.99936 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00066 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47273 * 90.00228 * 8 6 4 10 10 H 1.48500 * 109.46861 * 209.99915 * 8 6 4 11 11 H 1.48496 * 109.46911 * 330.00123 * 8 6 4 12 12 C 1.50704 * 109.46909 * 120.00442 * 2 1 3 13 13 C 1.38960 * 119.68817 * 355.73974 * 12 2 1 14 14 C 1.36586 * 120.81843 * 179.71449 * 13 12 2 15 15 C 1.39284 * 119.85015 * 0.55831 * 14 13 12 16 16 N 1.37041 * 133.85443 * 179.74799 * 15 14 13 17 17 H 0.97007 * 125.45605 * 359.94049 * 16 15 14 18 18 N 1.39865 * 109.08231 * 179.97438 * 16 15 14 19 19 C 1.30246 * 110.08428 * 0.02562 * 18 16 15 20 20 C 1.40818 * 119.41623 * 359.72268 * 15 14 13 21 21 C 1.36470 * 119.68463 * 176.01289 * 12 2 1 22 22 H 1.09004 * 109.47277 * 59.99566 * 1 2 3 23 23 H 1.09001 * 109.47010 * 300.00114 * 1 2 3 24 24 H 1.08997 * 109.47811 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46780 * 60.00347 * 3 2 1 26 26 H 1.09000 * 109.47621 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47156 * 300.00517 * 3 2 1 28 28 H 0.96997 * 119.99787 * 180.02562 * 7 6 4 29 29 H 1.08006 * 119.59036 * 359.97438 * 13 12 2 30 30 H 1.07999 * 120.08058 * 180.25560 * 14 13 12 31 31 H 1.08002 * 126.10742 * 179.97438 * 19 18 16 32 32 H 1.07999 * 120.17863 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6517 -1.5896 -1.1314 6 6 1.7011 -0.2380 -2.4827 7 7 0.9472 0.8329 -2.6033 8 14 2.3232 -1.1189 -4.0080 9 1 1.3433 -2.1584 -4.4136 10 1 2.4910 -0.1394 -5.1114 11 1 3.6298 -1.7592 -3.7114 12 6 2.0322 -0.7105 1.2305 13 6 1.1266 -1.1580 2.1847 14 6 1.5560 -1.8097 3.3056 15 6 2.9181 -2.0211 3.5057 16 7 3.6505 -2.6190 4.4978 17 1 3.2854 -3.0286 5.2977 18 7 5.0086 -2.5431 4.1724 19 6 5.1622 -1.9307 3.0332 20 6 3.8378 -1.5633 2.5427 21 6 3.3726 -0.9034 1.3997 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6768 1.9563 0.8901 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 0.7140 1.1650 -3.4843 29 1 0.0697 -0.9921 2.0361 30 1 0.8414 -2.1560 4.0376 31 1 6.1018 -1.7307 2.5397 32 1 4.0703 -0.5491 0.6553 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259973198.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:25 Heat of formation + Delta-G solvation = 77.794448 kcal Electronic energy + Delta-G solvation = -15675.437554 eV Core-core repulsion = 13215.980203 eV Total energy + Delta-G solvation = -2459.457351 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.76235 -37.67790 -34.51381 -31.95818 -31.16114 -29.47240 -27.76761 -25.79669 -25.13977 -22.25177 -21.93256 -21.23533 -18.95465 -17.37684 -16.23675 -15.42994 -14.99522 -14.38325 -14.24016 -13.98068 -13.44938 -12.97831 -12.84875 -12.01200 -11.56244 -11.26071 -11.13992 -10.91352 -10.87152 -10.64883 -10.47151 -10.37418 -10.14339 -9.77753 -9.55244 -9.33730 -8.81258 -8.33907 -8.09784 -7.22592 -5.97279 -4.07102 1.46895 2.19201 2.89842 3.05318 3.29929 3.37236 3.40840 4.37961 4.52376 5.01477 5.10228 5.26561 5.29124 5.69140 5.82236 6.09482 6.21851 6.44424 6.53949 6.73860 6.79737 6.87398 6.92245 7.01126 7.13547 7.31409 7.43912 7.51149 7.65971 7.69507 7.78269 7.92807 8.08078 8.20588 8.45553 8.93383 9.58156 11.03523 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034427 B = 0.007781 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.111672 B = 3597.425681 C = 4007.952363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.099 3.901 3 C -0.127 4.127 4 C -0.499 4.499 5 H 0.057 0.943 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.890 3.110 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 C -0.067 4.067 13 C -0.068 4.068 14 C -0.157 4.157 15 C 0.107 3.893 16 N -0.522 5.522 17 H 0.432 0.568 18 N -0.269 5.269 19 C 0.073 3.927 20 C -0.179 4.179 21 C -0.040 4.040 22 H 0.085 0.915 23 H 0.012 0.988 24 H 0.028 0.972 25 H 0.009 0.991 26 H 0.027 0.973 27 H 0.086 0.914 28 H 0.259 0.741 29 H 0.130 0.870 30 H 0.114 0.886 31 H 0.191 0.809 32 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.193 -2.818 8.848 9.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.099 3.901 3 C -0.184 4.184 4 C -0.537 4.537 5 H 0.075 0.925 6 C -0.136 4.136 7 N -0.525 5.525 8 Si 0.718 3.282 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 C -0.068 4.068 13 C -0.089 4.089 14 C -0.180 4.180 15 C -0.007 4.007 16 N -0.238 5.238 17 H 0.275 0.725 18 N -0.082 5.082 19 C -0.125 4.125 20 C -0.187 4.187 21 C -0.061 4.061 22 H 0.104 0.896 23 H 0.031 0.969 24 H 0.047 0.953 25 H 0.028 0.972 26 H 0.046 0.954 27 H 0.105 0.895 28 H 0.070 0.930 29 H 0.148 0.852 30 H 0.132 0.868 31 H 0.208 0.792 32 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 2.724 -3.278 9.672 10.569 hybrid contribution -0.311 -0.409 -1.054 1.173 sum 2.413 -3.688 8.618 9.680 Atomic orbital electron populations 1.21910 0.97785 0.99058 1.00419 1.17191 0.92438 0.91902 0.88597 1.21821 0.98479 0.97798 1.00343 1.21124 1.31248 1.11708 0.89643 0.92477 1.24905 0.95014 0.94925 0.98755 1.69811 1.36928 1.22667 1.23143 0.86627 0.79326 0.79421 0.82847 1.20821 1.21298 1.19922 1.20166 0.92267 0.97656 0.96703 1.20990 1.00575 0.95145 0.92141 1.19710 0.90917 1.06741 1.00599 1.18755 0.93692 0.97829 0.90433 1.45746 1.02495 1.54355 1.21182 0.72481 1.76400 0.95746 1.19639 1.16458 1.25015 0.97721 0.97085 0.92696 1.19985 0.91920 1.08314 0.98478 1.20288 0.96103 0.95653 0.94011 0.89610 0.96925 0.95275 0.97238 0.95354 0.89528 0.93042 0.85223 0.86794 0.79196 0.85371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.04 6.91 37.15 0.26 -2.78 16 2 C 0.10 2.30 0.58 -156.81 -0.09 2.21 16 3 C -0.13 -2.92 8.09 37.16 0.30 -2.62 16 4 C -0.50 -12.85 7.55 -34.44 -0.26 -13.11 16 5 H 0.06 1.49 7.47 -52.49 -0.39 1.10 16 6 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.89 -23.55 9.35 55.43 0.52 -23.03 16 8 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 12 C -0.07 -1.39 4.71 -104.99 -0.49 -1.88 16 13 C -0.07 -1.26 8.90 -39.91 -0.36 -1.61 16 14 C -0.16 -2.59 10.03 -39.79 -0.40 -2.99 16 15 C 0.11 1.82 7.34 -84.17 -0.62 1.20 16 16 N -0.52 -7.82 7.37 32.36 0.24 -7.58 16 17 H 0.43 4.97 8.96 -182.77 -1.64 3.34 16 18 N -0.27 -4.27 12.55 31.87 0.40 -3.87 16 19 C 0.07 1.13 12.28 -15.15 -0.19 0.95 16 20 C -0.18 -3.24 6.37 -105.21 -0.67 -3.91 16 21 C -0.04 -0.79 8.58 -39.58 -0.34 -1.13 16 22 H 0.09 2.14 6.08 -51.93 -0.32 1.83 16 23 H 0.01 0.24 7.29 -51.93 -0.38 -0.14 16 24 H 0.03 0.63 7.70 -51.93 -0.40 0.23 16 25 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 26 H 0.03 0.62 7.59 -51.93 -0.39 0.23 16 27 H 0.09 2.18 6.06 -51.93 -0.31 1.86 16 28 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16 29 H 0.13 2.25 5.84 -52.48 -0.31 1.94 16 30 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.19 2.24 8.06 -52.49 -0.42 1.82 16 32 H 0.13 2.52 7.64 -52.49 -0.40 2.11 16 LS Contribution 263.81 15.07 3.98 3.98 Total: -1.00 -28.06 263.81 -7.78 -35.84 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -4.94 Total: 3.21 kcal Atomic # 6 Polarization: -21.13 SS G_CDS: -2.95 Total: -24.08 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 1.16 Total: -34.49 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -28.06 -7.78 -35.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259973198.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.635 kcal (2) G-P(sol) polarization free energy of solvation -28.061 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.573 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds