Wall clock time and date at job start Mon Mar 30 2020 02:55:25
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.52999 * 109.47682 * 2 1
4 4 C 1.50703 * 109.47314 * 239.99979 * 2 1 3
5 5 H 1.07998 * 120.00051 * 240.11581 * 4 2 1
6 6 C 1.37876 * 119.99804 * 60.11247 * 4 2 1
7 7 N 1.31520 * 119.99936 * 0.02562 * 6 4 2
8 8 Si 1.86801 * 120.00066 * 180.02562 * 6 4 2
9 9 H 1.48503 * 109.47273 * 90.00228 * 8 6 4
10 10 H 1.48500 * 109.46861 * 209.99915 * 8 6 4
11 11 H 1.48496 * 109.46911 * 330.00123 * 8 6 4
12 12 C 1.50704 * 109.46909 * 120.00442 * 2 1 3
13 13 C 1.38960 * 119.68817 * 355.73974 * 12 2 1
14 14 C 1.36586 * 120.81843 * 179.71449 * 13 12 2
15 15 C 1.39284 * 119.85015 * 0.55831 * 14 13 12
16 16 N 1.37041 * 133.85443 * 179.74799 * 15 14 13
17 17 H 0.97007 * 125.45605 * 359.94049 * 16 15 14
18 18 N 1.39865 * 109.08231 * 179.97438 * 16 15 14
19 19 C 1.30246 * 110.08428 * 0.02562 * 18 16 15
20 20 C 1.40818 * 119.41623 * 359.72268 * 15 14 13
21 21 C 1.36470 * 119.68463 * 176.01289 * 12 2 1
22 22 H 1.09004 * 109.47277 * 59.99566 * 1 2 3
23 23 H 1.09001 * 109.47010 * 300.00114 * 1 2 3
24 24 H 1.08997 * 109.47811 * 179.97438 * 1 2 3
25 25 H 1.09004 * 109.46780 * 60.00347 * 3 2 1
26 26 H 1.09000 * 109.47621 * 179.97438 * 3 2 1
27 27 H 1.08994 * 109.47156 * 300.00517 * 3 2 1
28 28 H 0.96997 * 119.99787 * 180.02562 * 7 6 4
29 29 H 1.08006 * 119.59036 * 359.97438 * 13 12 2
30 30 H 1.07999 * 120.08058 * 180.25560 * 14 13 12
31 31 H 1.08002 * 126.10742 * 179.97438 * 19 18 16
32 32 H 1.07999 * 120.17863 * 359.97438 * 21 12 2
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0401 1.4424 0.0000
4 6 2.0323 -0.7104 -1.2305
5 1 2.6517 -1.5896 -1.1314
6 6 1.7011 -0.2380 -2.4827
7 7 0.9472 0.8329 -2.6033
8 14 2.3232 -1.1189 -4.0080
9 1 1.3433 -2.1584 -4.4136
10 1 2.4910 -0.1394 -5.1114
11 1 3.6298 -1.7592 -3.7114
12 6 2.0322 -0.7105 1.2305
13 6 1.1266 -1.1580 2.1847
14 6 1.5560 -1.8097 3.3056
15 6 2.9181 -2.0211 3.5057
16 7 3.6505 -2.6190 4.4978
17 1 3.2854 -3.0286 5.2977
18 7 5.0086 -2.5431 4.1724
19 6 5.1622 -1.9307 3.0332
20 6 3.8378 -1.5633 2.5427
21 6 3.3726 -0.9034 1.3997
22 1 -0.3634 0.5139 -0.8900
23 1 -0.3633 0.5139 0.8900
24 1 -0.3634 -1.0276 -0.0005
25 1 1.6768 1.9563 0.8901
26 1 3.1300 1.4424 0.0005
27 1 1.6767 1.9563 -0.8899
28 1 0.7140 1.1650 -3.4843
29 1 0.0697 -0.9921 2.0361
30 1 0.8414 -2.1560 4.0376
31 1 6.1018 -1.7307 2.5397
32 1 4.0703 -0.5491 0.6553
RHF calculation, no. of doubly occupied orbitals= 42
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259973198.mol2 32
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:55:25
Heat of formation + Delta-G solvation = 77.794448 kcal
Electronic energy + Delta-G solvation = -15675.437554 eV
Core-core repulsion = 13215.980203 eV
Total energy + Delta-G solvation = -2459.457351 eV
No. of doubly occupied orbitals = 42
Molecular weight
(most abundant/longest-lived isotopes) = 230.111 amu
Computer time = 0.23 seconds
Orbital eigenvalues (eV)
-40.76235 -37.67790 -34.51381 -31.95818 -31.16114 -29.47240 -27.76761 -25.79669
-25.13977 -22.25177 -21.93256 -21.23533 -18.95465 -17.37684 -16.23675 -15.42994
-14.99522 -14.38325 -14.24016 -13.98068 -13.44938 -12.97831 -12.84875 -12.01200
-11.56244 -11.26071 -11.13992 -10.91352 -10.87152 -10.64883 -10.47151 -10.37418
-10.14339 -9.77753 -9.55244 -9.33730 -8.81258 -8.33907 -8.09784 -7.22592
-5.97279 -4.07102 1.46895 2.19201 2.89842 3.05318 3.29929 3.37236
3.40840 4.37961 4.52376 5.01477 5.10228 5.26561 5.29124 5.69140
5.82236 6.09482 6.21851 6.44424 6.53949 6.73860 6.79737 6.87398
6.92245 7.01126 7.13547 7.31409 7.43912 7.51149 7.65971 7.69507
7.78269 7.92807 8.08078 8.20588 8.45553 8.93383 9.58156 11.03523
Molecular weight = 230.11amu
Principal moments of inertia in cm(-1)
A = 0.034427 B = 0.007781 C = 0.006984
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 813.111672 B = 3597.425681 C = 4007.952363
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.134 4.134
2 C 0.099 3.901
3 C -0.127 4.127
4 C -0.499 4.499
5 H 0.057 0.943
6 C 0.065 3.935
7 N -0.887 5.887
8 Si 0.890 3.110
9 H -0.282 1.282
10 H -0.287 1.287
11 H -0.274 1.274
12 C -0.067 4.067
13 C -0.068 4.068
14 C -0.157 4.157
15 C 0.107 3.893
16 N -0.522 5.522
17 H 0.432 0.568
18 N -0.269 5.269
19 C 0.073 3.927
20 C -0.179 4.179
21 C -0.040 4.040
22 H 0.085 0.915
23 H 0.012 0.988
24 H 0.028 0.972
25 H 0.009 0.991
26 H 0.027 0.973
27 H 0.086 0.914
28 H 0.259 0.741
29 H 0.130 0.870
30 H 0.114 0.886
31 H 0.191 0.809
32 H 0.128 0.872
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.193 -2.818 8.848 9.541
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.192 4.192
2 C 0.099 3.901
3 C -0.184 4.184
4 C -0.537 4.537
5 H 0.075 0.925
6 C -0.136 4.136
7 N -0.525 5.525
8 Si 0.718 3.282
9 H -0.208 1.208
10 H -0.213 1.213
11 H -0.199 1.199
12 C -0.068 4.068
13 C -0.089 4.089
14 C -0.180 4.180
15 C -0.007 4.007
16 N -0.238 5.238
17 H 0.275 0.725
18 N -0.082 5.082
19 C -0.125 4.125
20 C -0.187 4.187
21 C -0.061 4.061
22 H 0.104 0.896
23 H 0.031 0.969
24 H 0.047 0.953
25 H 0.028 0.972
26 H 0.046 0.954
27 H 0.105 0.895
28 H 0.070 0.930
29 H 0.148 0.852
30 H 0.132 0.868
31 H 0.208 0.792
32 H 0.146 0.854
Dipole moment (debyes) X Y Z Total
from point charges 2.724 -3.278 9.672 10.569
hybrid contribution -0.311 -0.409 -1.054 1.173
sum 2.413 -3.688 8.618 9.680
Atomic orbital electron populations
1.21910 0.97785 0.99058 1.00419 1.17191 0.92438 0.91902 0.88597
1.21821 0.98479 0.97798 1.00343 1.21124 1.31248 1.11708 0.89643
0.92477 1.24905 0.95014 0.94925 0.98755 1.69811 1.36928 1.22667
1.23143 0.86627 0.79326 0.79421 0.82847 1.20821 1.21298 1.19922
1.20166 0.92267 0.97656 0.96703 1.20990 1.00575 0.95145 0.92141
1.19710 0.90917 1.06741 1.00599 1.18755 0.93692 0.97829 0.90433
1.45746 1.02495 1.54355 1.21182 0.72481 1.76400 0.95746 1.19639
1.16458 1.25015 0.97721 0.97085 0.92696 1.19985 0.91920 1.08314
0.98478 1.20288 0.96103 0.95653 0.94011 0.89610 0.96925 0.95275
0.97238 0.95354 0.89528 0.93042 0.85223 0.86794 0.79196 0.85371
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.13 -3.04 6.91 37.15 0.26 -2.78 16
2 C 0.10 2.30 0.58 -156.81 -0.09 2.21 16
3 C -0.13 -2.92 8.09 37.16 0.30 -2.62 16
4 C -0.50 -12.85 7.55 -34.44 -0.26 -13.11 16
5 H 0.06 1.49 7.47 -52.49 -0.39 1.10 16
6 C 0.06 1.69 5.15 -17.82 -0.09 1.60 16
7 N -0.89 -23.55 9.35 55.43 0.52 -23.03 16
8 Si 0.89 20.56 29.54 -169.99 -5.02 15.54 16
9 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16
10 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16
11 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16
12 C -0.07 -1.39 4.71 -104.99 -0.49 -1.88 16
13 C -0.07 -1.26 8.90 -39.91 -0.36 -1.61 16
14 C -0.16 -2.59 10.03 -39.79 -0.40 -2.99 16
15 C 0.11 1.82 7.34 -84.17 -0.62 1.20 16
16 N -0.52 -7.82 7.37 32.36 0.24 -7.58 16
17 H 0.43 4.97 8.96 -182.77 -1.64 3.34 16
18 N -0.27 -4.27 12.55 31.87 0.40 -3.87 16
19 C 0.07 1.13 12.28 -15.15 -0.19 0.95 16
20 C -0.18 -3.24 6.37 -105.21 -0.67 -3.91 16
21 C -0.04 -0.79 8.58 -39.58 -0.34 -1.13 16
22 H 0.09 2.14 6.08 -51.93 -0.32 1.83 16
23 H 0.01 0.24 7.29 -51.93 -0.38 -0.14 16
24 H 0.03 0.63 7.70 -51.93 -0.40 0.23 16
25 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16
26 H 0.03 0.62 7.59 -51.93 -0.39 0.23 16
27 H 0.09 2.18 6.06 -51.93 -0.31 1.86 16
28 H 0.26 6.66 8.31 -40.82 -0.34 6.32 16
29 H 0.13 2.25 5.84 -52.48 -0.31 1.94 16
30 H 0.11 1.51 8.06 -52.49 -0.42 1.09 16
31 H 0.19 2.24 8.06 -52.49 -0.42 1.82 16
32 H 0.13 2.52 7.64 -52.49 -0.40 2.11 16
LS Contribution 263.81 15.07 3.98 3.98
Total: -1.00 -28.06 263.81 -7.78 -35.84
By element:
Atomic # 1 Polarization: 8.16 SS G_CDS: -4.94 Total: 3.21 kcal
Atomic # 6 Polarization: -21.13 SS G_CDS: -2.95 Total: -24.08 kcal
Atomic # 7 Polarization: -35.65 SS G_CDS: 1.16 Total: -34.49 kcal
Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal
Total LS contribution 3.98 Total: 3.98 kcal
Total: -28.06 -7.78 -35.84 kcal
The number of atoms in the molecule is 32
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259973198.mol2 32
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 113.635 kcal
(2) G-P(sol) polarization free energy of solvation -28.061 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.573 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.779 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.840 kcal
(6) G-S(sol) free energy of system = (1) + (5) 77.794 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.23 seconds