Wall clock time and date at job start Mon Mar 30 2020 02:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47682 * 2 1 4 4 C 1.50703 * 109.47314 * 239.99979 * 2 1 3 5 5 H 1.07998 * 120.00051 * 240.11581 * 4 2 1 6 6 C 1.37876 * 119.99804 * 60.11247 * 4 2 1 7 7 N 1.31520 * 119.99936 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 120.00066 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47273 * 90.00228 * 8 6 4 10 10 H 1.48500 * 109.46861 * 209.99915 * 8 6 4 11 11 H 1.48496 * 109.46911 * 330.00123 * 8 6 4 12 12 C 1.50704 * 109.46909 * 120.00442 * 2 1 3 13 13 C 1.38960 * 119.68817 * 355.73974 * 12 2 1 14 14 C 1.36586 * 120.81843 * 179.71449 * 13 12 2 15 15 C 1.39284 * 119.85015 * 0.55831 * 14 13 12 16 16 N 1.37041 * 133.85443 * 179.74799 * 15 14 13 17 17 H 0.97007 * 125.45605 * 359.94049 * 16 15 14 18 18 N 1.39865 * 109.08231 * 179.97438 * 16 15 14 19 19 C 1.30246 * 110.08428 * 0.02562 * 18 16 15 20 20 C 1.40818 * 119.41623 * 359.72268 * 15 14 13 21 21 C 1.36470 * 119.68463 * 176.01289 * 12 2 1 22 22 H 1.09004 * 109.47277 * 59.99566 * 1 2 3 23 23 H 1.09001 * 109.47010 * 300.00114 * 1 2 3 24 24 H 1.08997 * 109.47811 * 179.97438 * 1 2 3 25 25 H 1.09004 * 109.46780 * 60.00347 * 3 2 1 26 26 H 1.09000 * 109.47621 * 179.97438 * 3 2 1 27 27 H 1.08994 * 109.47156 * 300.00517 * 3 2 1 28 28 H 0.96997 * 119.99787 * 180.02562 * 7 6 4 29 29 H 1.08006 * 119.59036 * 359.97438 * 13 12 2 30 30 H 1.07999 * 120.08058 * 180.25560 * 14 13 12 31 31 H 1.08002 * 126.10742 * 179.97438 * 19 18 16 32 32 H 1.07999 * 120.17863 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6517 -1.5896 -1.1314 6 6 1.7011 -0.2380 -2.4827 7 7 0.9472 0.8329 -2.6033 8 14 2.3232 -1.1189 -4.0080 9 1 1.3433 -2.1584 -4.4136 10 1 2.4910 -0.1394 -5.1114 11 1 3.6298 -1.7592 -3.7114 12 6 2.0322 -0.7105 1.2305 13 6 1.1266 -1.1580 2.1847 14 6 1.5560 -1.8097 3.3056 15 6 2.9181 -2.0211 3.5057 16 7 3.6505 -2.6190 4.4978 17 1 3.2854 -3.0286 5.2977 18 7 5.0086 -2.5431 4.1724 19 6 5.1622 -1.9307 3.0332 20 6 3.8378 -1.5633 2.5427 21 6 3.3726 -0.9034 1.3997 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 0.5139 0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 1.6768 1.9563 0.8901 26 1 3.1300 1.4424 0.0005 27 1 1.6767 1.9563 -0.8899 28 1 0.7140 1.1650 -3.4843 29 1 0.0697 -0.9921 2.0361 30 1 0.8414 -2.1560 4.0376 31 1 6.1018 -1.7307 2.5397 32 1 4.0703 -0.5491 0.6553 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259973198.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:24 Heat of formation + Delta-G solvation = 62.473875 kcal Electronic energy + Delta-G solvation = -15676.101903 eV Core-core repulsion = 13215.980203 eV Total energy + Delta-G solvation = -2460.121700 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.06528 -39.20176 -36.16811 -33.42957 -32.85903 -30.82704 -29.23831 -27.57318 -27.11233 -23.69017 -23.36812 -22.51835 -20.61144 -18.70390 -18.01900 -17.00484 -16.71269 -15.72974 -15.66354 -15.41005 -14.90693 -14.68000 -14.26614 -13.70775 -13.30381 -13.01136 -12.93994 -12.63197 -12.40416 -12.36719 -12.14562 -11.96406 -11.80978 -11.37626 -11.08945 -11.04918 -10.65510 -10.30349 -9.45879 -8.62874 -7.93729 -6.09240 0.13085 0.77312 1.44615 1.48043 1.55707 1.63316 1.89026 2.49756 3.05033 3.29321 3.80053 3.83943 4.01046 4.27931 4.50738 4.69625 4.83202 4.90102 4.98716 5.04285 5.18295 5.22152 5.31375 5.46265 5.53504 5.62674 5.69884 5.76247 5.94355 6.08583 6.25946 6.38255 6.50077 6.54719 6.71473 6.96191 7.57763 9.04153 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034427 B = 0.007781 C = 0.006984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 813.111672 B = 3597.425681 C = 4007.952363 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.093 3.907 3 C -0.118 4.118 4 C -0.509 4.509 5 H 0.045 0.955 6 C 0.025 3.975 7 N -0.904 5.904 8 Si 0.940 3.060 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.273 1.273 12 C -0.090 4.090 13 C -0.080 4.080 14 C -0.143 4.143 15 C 0.102 3.898 16 N -0.510 5.510 17 H 0.448 0.552 18 N -0.274 5.274 19 C 0.075 3.925 20 C -0.198 4.198 21 C -0.050 4.050 22 H 0.058 0.942 23 H 0.033 0.967 24 H 0.028 0.972 25 H 0.022 0.978 26 H 0.025 0.975 27 H 0.061 0.939 28 H 0.258 0.742 29 H 0.139 0.861 30 H 0.151 0.849 31 H 0.222 0.778 32 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.523 -3.819 10.364 11.329 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.093 3.907 3 C -0.176 4.176 4 C -0.547 4.547 5 H 0.064 0.936 6 C -0.174 4.174 7 N -0.544 5.544 8 Si 0.767 3.233 9 H -0.208 1.208 10 H -0.211 1.211 11 H -0.198 1.198 12 C -0.092 4.092 13 C -0.100 4.100 14 C -0.165 4.165 15 C -0.012 4.012 16 N -0.228 5.228 17 H 0.294 0.706 18 N -0.088 5.088 19 C -0.123 4.123 20 C -0.206 4.206 21 C -0.071 4.071 22 H 0.077 0.923 23 H 0.052 0.948 24 H 0.047 0.953 25 H 0.041 0.959 26 H 0.044 0.956 27 H 0.080 0.920 28 H 0.068 0.932 29 H 0.156 0.844 30 H 0.169 0.831 31 H 0.239 0.761 32 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 3.057 -4.295 11.216 12.393 hybrid contribution -0.377 -0.129 -1.436 1.491 sum 2.680 -4.424 9.780 11.063 Atomic orbital electron populations 1.21764 0.97545 0.98843 1.00074 1.17159 0.92650 0.91817 0.89123 1.21687 0.98236 0.97996 0.99661 1.21357 1.30926 1.11429 0.91033 0.93643 1.25482 0.95426 0.95604 1.00912 1.69934 1.37634 1.23467 1.23346 0.85840 0.78755 0.78447 0.80261 1.20811 1.21132 1.19796 1.20002 0.93205 0.99290 0.96695 1.21061 1.00623 0.95838 0.92498 1.19998 0.91370 1.04864 1.00254 1.18946 0.94039 0.97584 0.90673 1.45784 1.02055 1.53653 1.21290 0.70562 1.76402 0.96127 1.19700 1.16568 1.25524 0.98116 0.96261 0.92371 1.20194 0.93591 1.08507 0.98301 1.20197 0.95689 0.96491 0.94692 0.92301 0.94764 0.95328 0.95909 0.95573 0.91980 0.93244 0.84380 0.83118 0.76120 0.86473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.64 6.91 71.98 0.50 -5.14 16 2 C 0.09 4.33 0.58 -53.67 -0.03 4.30 16 3 C -0.12 -5.50 8.09 71.98 0.58 -4.92 16 4 C -0.51 -26.56 7.55 25.60 0.19 -26.36 16 5 H 0.05 2.42 7.47 -2.91 -0.02 2.39 16 6 C 0.02 1.29 5.15 84.65 0.44 1.73 16 7 N -0.90 -48.86 9.35 21.45 0.20 -48.66 16 8 Si 0.94 42.51 29.54 68.60 2.03 44.53 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 10 H -0.29 -12.75 7.11 99.48 0.71 -12.04 16 11 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 12 C -0.09 -3.72 4.71 -20.10 -0.09 -3.81 16 13 C -0.08 -2.81 8.90 22.06 0.20 -2.61 16 14 C -0.14 -4.27 10.03 22.14 0.22 -4.05 16 15 C 0.10 3.23 7.34 39.21 0.29 3.51 16 16 N -0.51 -13.69 7.37 -51.53 -0.38 -14.07 16 17 H 0.45 8.74 8.96 -213.46 -1.91 6.83 16 18 N -0.27 -7.94 12.55 -53.09 -0.67 -8.61 16 19 C 0.07 2.15 12.28 86.92 1.07 3.21 16 20 C -0.20 -6.83 6.37 -20.24 -0.13 -6.96 16 21 C -0.05 -1.96 8.58 22.27 0.19 -1.77 16 22 H 0.06 2.98 6.08 -2.38 -0.01 2.96 16 23 H 0.03 1.35 7.29 -2.39 -0.02 1.33 16 24 H 0.03 1.24 7.70 -2.39 -0.02 1.22 16 25 H 0.02 0.95 8.14 -2.38 -0.02 0.93 16 26 H 0.03 1.16 7.59 -2.39 -0.02 1.15 16 27 H 0.06 3.18 6.06 -2.39 -0.01 3.17 16 28 H 0.26 13.46 8.31 -92.71 -0.77 12.69 16 29 H 0.14 4.51 5.84 -2.91 -0.02 4.50 16 30 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 31 H 0.22 4.61 8.06 -2.91 -0.02 4.59 16 32 H 0.12 4.69 7.64 -2.91 -0.02 4.66 16 Total: -1.00 -59.25 263.81 3.83 -55.42 By element: Atomic # 1 Polarization: 15.02 SS G_CDS: -0.77 Total: 14.25 kcal Atomic # 6 Polarization: -46.29 SS G_CDS: 3.42 Total: -42.87 kcal Atomic # 7 Polarization: -70.49 SS G_CDS: -0.85 Total: -71.33 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -59.25 3.83 -55.42 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259973198.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.895 kcal (2) G-P(sol) polarization free energy of solvation -59.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.421 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.474 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds