Wall clock time and date at job start Mon Mar 30 2020 02:49:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53004 * 109.47513 * 2 1 4 4 C 1.50697 * 109.47259 * 120.00081 * 2 1 3 5 5 N 1.30585 * 125.65507 * 307.90928 * 4 2 1 6 6 N 1.40052 * 109.58845 * 180.02562 * 5 4 2 7 7 H 0.97001 * 126.00769 * 179.75661 * 6 5 4 8 8 C 1.37172 * 107.98802 * 359.77934 * 6 5 4 9 9 C 1.39316 * 133.72281 * 179.97438 * 8 6 5 10 10 C 1.38155 * 120.98253 * 180.02562 * 9 8 6 11 11 C 1.37847 * 121.54811 * 359.97438 * 10 9 8 12 12 C 1.40661 * 120.15180 * 0.02562 * 11 10 9 13 13 C 1.40571 * 120.70074 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99787 * 213.38866 * 13 12 11 15 15 C 1.40096 * 119.99754 * 33.39085 * 13 12 11 16 16 N 1.30769 * 120.00051 * 9.21043 * 15 13 12 17 17 Si 1.86800 * 119.99780 * 189.21289 * 15 13 12 18 18 H 1.48496 * 109.47207 * 359.97438 * 17 15 13 19 19 H 1.48502 * 109.47090 * 120.00220 * 17 15 13 20 20 H 1.48496 * 109.46970 * 239.99650 * 17 15 13 21 21 C 1.40552 * 125.65381 * 127.54186 * 4 2 1 22 22 H 1.09008 * 109.46956 * 300.00094 * 1 2 3 23 23 H 1.09002 * 109.47363 * 59.99485 * 1 2 3 24 24 H 1.08997 * 109.47482 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47318 * 240.00445 * 2 1 3 26 26 H 1.09000 * 109.46501 * 300.00471 * 3 2 1 27 27 H 1.09008 * 109.46670 * 59.99646 * 3 2 1 28 28 H 1.08996 * 109.47728 * 179.97438 * 3 2 1 29 29 H 1.08000 * 119.50709 * 359.97438 * 9 8 6 30 30 H 1.08002 * 119.21953 * 179.97438 * 10 9 8 31 31 H 1.07999 * 119.92580 * 180.02562 * 11 10 9 32 32 H 0.97000 * 119.99942 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 1.2304 5 7 1.6714 -0.4529 2.4587 6 7 2.3450 -1.3121 3.3359 7 1 2.2573 -1.3242 4.3019 8 6 3.1510 -2.1332 2.5891 9 6 4.0342 -3.1630 2.9059 10 6 4.7303 -3.8321 1.9178 11 6 4.5802 -3.5104 0.5858 12 6 3.7031 -2.4798 0.2024 13 6 3.5406 -2.1426 -1.1526 14 1 3.3491 -1.1179 -1.4348 15 6 3.6272 -3.1358 -2.1368 16 7 3.6783 -4.3960 -1.7913 17 14 3.6697 -2.6599 -3.9427 18 1 3.5989 -1.1819 -4.0669 19 1 4.9318 -3.1487 -4.5538 20 1 2.5116 -3.2712 -4.6430 21 6 2.9615 -1.7648 1.2456 22 1 -0.3633 0.5139 0.8900 23 1 -0.3634 0.5139 -0.8899 24 1 -0.3634 -1.0276 0.0005 25 1 1.8933 -0.5138 -0.8900 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9563 0.8900 28 1 3.1300 1.4425 0.0005 29 1 4.1774 -3.4419 3.9394 30 1 5.4081 -4.6257 2.1955 31 1 5.1372 -4.0510 -0.1651 32 1 3.7386 -5.0837 -2.4728 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259984383.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:49:30 Heat of formation + Delta-G solvation = 43.619324 kcal Electronic energy + Delta-G solvation = -15843.472129 eV Core-core repulsion = 13382.532834 eV Total energy + Delta-G solvation = -2460.939295 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -41.76266 -37.62190 -36.57533 -35.08152 -32.13557 -30.51239 -29.81586 -27.91662 -27.01497 -24.14242 -22.97921 -22.28307 -19.86108 -19.50641 -17.77274 -17.17709 -16.55092 -15.58966 -15.47772 -15.28889 -15.19288 -14.58735 -14.24644 -13.80857 -13.36673 -13.17217 -12.93749 -12.82963 -12.38864 -12.17740 -12.07184 -11.98549 -11.87734 -11.66517 -11.42051 -11.16397 -10.89606 -10.34895 -9.10446 -8.66301 -8.57486 -6.34787 0.48466 1.21444 1.44632 1.55284 1.59788 1.96053 2.18432 2.22849 2.75377 3.66124 3.82958 4.10061 4.33384 4.39936 4.57102 4.64015 4.73429 4.88390 4.89587 5.02897 5.08547 5.09583 5.13887 5.26464 5.41781 5.42662 5.46294 5.69197 5.94207 6.03517 6.14502 6.26320 6.60990 6.82249 6.86162 6.95939 7.14741 8.29525 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.020351 B = 0.012499 C = 0.008326 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.532181 B = 2239.574924 C = 3362.275954 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.034 4.034 3 C -0.129 4.129 4 C 0.123 3.877 5 N -0.321 5.321 6 N -0.523 5.523 7 H 0.439 0.561 8 C 0.145 3.855 9 C -0.296 4.296 10 C -0.039 4.039 11 C -0.250 4.250 12 C 0.154 3.846 13 C -0.461 4.461 14 H 0.097 0.903 15 C 0.035 3.965 16 N -0.810 5.810 17 Si 0.982 3.018 18 H -0.247 1.247 19 H -0.265 1.265 20 H -0.266 1.266 21 C -0.286 4.286 22 H 0.055 0.945 23 H 0.084 0.916 24 H 0.036 0.964 25 H 0.096 0.904 26 H 0.086 0.914 27 H 0.054 0.946 28 H 0.041 0.959 29 H 0.114 0.886 30 H 0.119 0.881 31 H 0.103 0.897 32 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.931 4.919 -1.109 5.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.054 4.054 3 C -0.187 4.187 4 C -0.049 4.049 5 N -0.139 5.139 6 N -0.238 5.238 7 H 0.284 0.716 8 C 0.028 3.972 9 C -0.320 4.320 10 C -0.060 4.060 11 C -0.271 4.271 12 C 0.149 3.851 13 C -0.489 4.489 14 H 0.115 0.885 15 C -0.182 4.182 16 N -0.435 5.435 17 Si 0.802 3.198 18 H -0.170 1.170 19 H -0.190 1.190 20 H -0.191 1.191 21 C -0.294 4.294 22 H 0.075 0.925 23 H 0.103 0.897 24 H 0.056 0.944 25 H 0.113 0.887 26 H 0.104 0.896 27 H 0.073 0.927 28 H 0.060 0.940 29 H 0.132 0.868 30 H 0.137 0.863 31 H 0.121 0.879 32 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -2.684 5.430 -0.405 6.071 hybrid contribution 0.664 -1.011 -0.218 1.229 sum -2.020 4.419 -0.623 4.899 Atomic orbital electron populations 1.21707 0.93142 1.01151 1.02732 1.20017 0.96735 0.96073 0.92592 1.21712 1.00392 0.93851 1.02748 1.22238 0.94455 0.94367 0.93818 1.76471 1.20949 1.16457 1.00007 1.45749 1.38805 1.31106 1.08136 0.71573 1.18974 0.93432 0.93419 0.91393 1.19408 1.09067 1.04634 0.98862 1.20688 0.96181 0.96435 0.92685 1.20944 1.05709 1.05733 0.94755 1.18440 0.86026 0.88750 0.91888 1.19934 1.41443 0.96625 0.90892 0.88526 1.26901 0.91088 0.93969 1.06237 1.69861 1.33289 1.01934 1.38373 0.85137 0.78966 0.80575 0.75128 1.16993 1.19006 1.19073 1.20191 1.08553 1.06904 0.93787 0.92547 0.89690 0.94443 0.88653 0.89564 0.92708 0.93952 0.86790 0.86267 0.87873 0.89728 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.15 9.12 71.98 0.66 -3.49 16 2 C -0.03 -1.27 3.20 -11.54 -0.04 -1.31 16 3 C -0.13 -4.05 9.18 71.98 0.66 -3.39 16 4 C 0.12 5.60 5.77 43.31 0.25 5.85 16 5 N -0.32 -14.09 12.52 -47.08 -0.59 -14.68 16 6 N -0.52 -22.04 7.45 -51.58 -0.38 -22.42 16 7 H 0.44 14.92 8.96 -213.35 -1.91 13.00 16 8 C 0.14 6.92 7.33 39.14 0.29 7.20 16 9 C -0.30 -13.39 10.03 22.51 0.23 -13.16 16 10 C -0.04 -1.82 9.94 22.16 0.22 -1.60 16 11 C -0.25 -13.03 8.64 22.77 0.20 -12.83 16 12 C 0.15 8.21 5.65 -19.93 -0.11 8.10 16 13 C -0.46 -23.06 7.98 23.29 0.19 -22.87 16 14 H 0.10 4.55 5.82 -2.91 -0.02 4.53 16 15 C 0.04 1.66 5.26 85.30 0.45 2.11 16 16 N -0.81 -40.18 11.10 21.85 0.24 -39.94 16 17 Si 0.98 35.00 29.57 68.60 2.03 37.03 16 18 H -0.25 -8.36 7.11 99.48 0.71 -7.65 16 19 H -0.27 -9.19 7.11 99.48 0.71 -8.48 16 20 H -0.27 -9.18 7.11 99.48 0.71 -8.47 16 21 C -0.29 -14.61 6.19 -19.96 -0.12 -14.73 16 22 H 0.06 1.76 8.14 -2.38 -0.02 1.74 16 23 H 0.08 2.14 8.14 -2.39 -0.02 2.12 16 24 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.10 3.84 4.79 -2.39 -0.01 3.83 16 26 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 27 H 0.05 1.68 8.14 -2.38 -0.02 1.66 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.11 4.42 8.06 -2.91 -0.02 4.40 16 30 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 31 H 0.10 5.51 6.55 -2.91 -0.02 5.49 16 32 H 0.29 12.98 8.29 -92.71 -0.77 12.21 16 Total: -1.00 -59.65 269.63 3.38 -56.27 By element: Atomic # 1 Polarization: 34.64 SS G_CDS: -0.77 Total: 33.87 kcal Atomic # 6 Polarization: -52.98 SS G_CDS: 2.86 Total: -50.13 kcal Atomic # 7 Polarization: -76.31 SS G_CDS: -0.73 Total: -77.04 kcal Atomic # 14 Polarization: 35.00 SS G_CDS: 2.03 Total: 37.03 kcal Total: -59.65 3.38 -56.27 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259984383.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.885 kcal (2) G-P(sol) polarization free energy of solvation -59.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds