Wall clock time and date at job start Mon Mar 30 2020 03:28:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37971 * 119.72788 * 2 1 4 4 C 1.38225 * 119.76741 * 180.02562 * 3 2 1 5 5 C 1.37976 * 119.77610 * 359.88578 * 4 3 2 6 6 C 1.50699 * 119.73234 * 180.02562 * 5 4 3 7 7 C 1.38873 * 120.54271 * 0.02982 * 5 4 3 8 8 C 1.37703 * 119.67970 * 0.14693 * 7 5 4 9 9 C 1.50633 * 122.56415 * 179.69225 * 8 7 5 10 10 C 1.52736 * 110.58305 * 17.55441 * 9 8 7 11 11 C 1.53325 * 108.37235 * 308.91510 * 10 9 8 12 12 H 1.08998 * 109.68671 * 310.21536 * 11 10 9 13 13 C 1.50697 * 109.68187 * 189.69344 * 11 10 9 14 14 H 1.08001 * 120.00109 * 240.00402 * 13 11 10 15 15 C 1.37878 * 120.00193 * 60.00544 * 13 11 10 16 16 N 1.31519 * 119.99659 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00571 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46843 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47767 * 119.99735 * 17 15 13 20 20 H 1.48499 * 109.47133 * 240.00123 * 17 15 13 21 21 C 1.50629 * 117.75322 * 180.20729 * 7 5 4 22 22 H 1.09005 * 109.46933 * 89.99882 * 1 2 3 23 23 H 1.08994 * 109.47260 * 210.00678 * 1 2 3 24 24 H 1.09007 * 109.46777 * 330.00751 * 1 2 3 25 25 H 1.07996 * 120.11756 * 0.05137 * 3 2 1 26 26 H 1.08005 * 120.11562 * 179.91860 * 4 3 2 27 27 H 1.09001 * 109.47166 * 269.98454 * 6 5 4 28 28 H 1.09003 * 109.46570 * 29.98298 * 6 5 4 29 29 H 1.08992 * 109.47191 * 149.98049 * 6 5 4 30 30 H 1.08999 * 109.26059 * 257.26660 * 9 8 7 31 31 H 1.09008 * 109.25326 * 137.83851 * 9 8 7 32 32 H 1.08997 * 109.68144 * 68.64123 * 10 9 8 33 33 H 1.09004 * 109.68271 * 189.19780 * 10 9 8 34 34 H 0.96995 * 120.00058 * 180.02562 * 16 15 13 35 35 H 1.08997 * 109.25149 * 77.18767 * 21 7 5 36 36 H 1.09003 * 109.25992 * 317.75679 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1981 0.0000 4 6 3.5735 1.1991 -0.0005 5 6 4.2595 0.0020 0.0013 6 6 5.7665 0.0042 0.0013 7 6 3.5727 -1.2050 0.0031 8 6 2.1956 -1.2060 -0.0001 9 6 1.3857 -2.4760 -0.0052 10 6 2.2455 -3.6629 0.4250 11 6 3.5261 -3.6627 -0.4182 12 1 3.2707 -3.5700 -1.4738 13 6 4.2840 -4.9451 -0.1902 14 1 5.2889 -4.9156 0.2046 15 6 3.6947 -6.1561 -0.4856 16 7 2.4709 -6.1920 -0.9659 17 14 4.6339 -7.7457 -0.2023 18 1 5.9805 -7.4349 0.3412 19 1 3.8924 -8.5931 0.7658 20 1 4.7758 -8.4729 -1.4893 21 6 4.3843 -2.4739 0.0099 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5138 25 1 1.6487 2.1319 0.0008 26 1 4.1147 2.1337 -0.0019 27 1 6.1298 0.0028 -1.0264 28 1 6.1284 0.8957 0.5135 29 1 6.1311 -0.8843 0.5168 30 1 1.0035 -2.6546 -1.0102 31 1 0.5477 -2.3707 0.6839 32 1 2.5006 -3.5679 1.4804 33 1 1.6981 -4.5912 0.2611 34 1 2.0562 -7.0439 -1.1734 35 1 4.7670 -2.6504 1.0151 36 1 5.2220 -2.3686 -0.6796 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259988727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:07 Heat of formation + Delta-G solvation = -9.151441 kcal Electronic energy + Delta-G solvation = -16041.263371 eV Core-core repulsion = 13681.576107 eV Total energy + Delta-G solvation = -2359.687264 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.69781 -35.65110 -34.17880 -32.36109 -29.44023 -29.06715 -28.70584 -25.02541 -24.30169 -22.42903 -21.37219 -19.46238 -18.29230 -16.41179 -15.44666 -15.01861 -14.41413 -14.32096 -13.74994 -13.27871 -12.94761 -12.79835 -12.54920 -12.41927 -12.16114 -12.03449 -11.57887 -11.41823 -11.08288 -10.93756 -10.67936 -10.63039 -10.51008 -10.16269 -9.87226 -9.60173 -9.00036 -8.67098 -8.29250 -7.89065 -7.82934 -5.96936 -4.03420 1.81961 1.95106 3.30244 3.38507 3.42209 4.19812 4.44797 5.21409 5.24932 5.32726 5.42153 5.44749 5.52559 5.82911 5.85332 5.89883 5.94647 6.04664 6.15777 6.19332 6.22163 6.29383 6.44532 6.60573 6.66392 6.68326 6.86065 6.94426 7.01653 7.08824 7.22219 7.34511 7.55484 7.61802 7.77633 8.02548 8.14887 8.48131 9.00610 9.61069 11.08558 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.033927 B = 0.007697 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.096677 B = 3637.048212 C = 4369.806366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.102 4.102 3 C -0.133 4.133 4 C -0.131 4.131 5 C -0.102 4.102 6 C -0.112 4.112 7 C -0.057 4.057 8 C -0.062 4.062 9 C -0.081 4.081 10 C -0.112 4.112 11 C 0.050 3.950 12 H 0.027 0.973 13 C -0.511 4.511 14 H 0.055 0.945 15 C 0.061 3.939 16 N -0.889 5.889 17 Si 0.889 3.111 18 H -0.274 1.274 19 H -0.285 1.285 20 H -0.285 1.285 21 C -0.074 4.074 22 H 0.065 0.935 23 H 0.070 0.930 24 H 0.057 0.943 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.070 0.930 30 H 0.068 0.932 31 H 0.057 0.943 32 H 0.032 0.968 33 H 0.097 0.903 34 H 0.259 0.741 35 H 0.064 0.936 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.781 11.568 1.922 11.752 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.102 4.102 3 C -0.151 4.151 4 C -0.149 4.149 5 C -0.102 4.102 6 C -0.169 4.169 7 C -0.057 4.057 8 C -0.062 4.062 9 C -0.118 4.118 10 C -0.150 4.150 11 C 0.032 3.968 12 H 0.045 0.955 13 C -0.549 4.549 14 H 0.073 0.927 15 C -0.140 4.140 16 N -0.528 5.528 17 Si 0.717 3.283 18 H -0.198 1.198 19 H -0.211 1.211 20 H -0.211 1.211 21 C -0.111 4.111 22 H 0.083 0.917 23 H 0.089 0.911 24 H 0.076 0.924 25 H 0.129 0.871 26 H 0.129 0.871 27 H 0.084 0.916 28 H 0.076 0.924 29 H 0.089 0.911 30 H 0.086 0.914 31 H 0.075 0.925 32 H 0.051 0.949 33 H 0.115 0.885 34 H 0.069 0.931 35 H 0.082 0.918 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.909 11.439 1.864 11.625 hybrid contribution 0.426 -0.734 0.095 0.854 sum -0.483 10.705 1.959 10.893 Atomic orbital electron populations 1.20822 0.92008 1.02302 1.01885 1.19892 0.95649 0.92898 1.01764 1.20732 0.94135 0.96844 1.03388 1.20758 0.94118 0.96908 1.03098 1.19931 0.95760 0.92851 1.01639 1.20786 0.91905 1.02282 1.01902 1.19923 0.93181 0.95183 0.97420 1.19752 0.93201 0.94751 0.98480 1.20647 0.97350 0.92774 1.01024 1.21652 0.98429 0.97214 0.97715 1.18653 0.91674 0.90966 0.95516 0.95480 1.21250 1.00338 0.90805 1.42545 0.92658 1.24960 0.94948 0.98967 0.95131 1.69889 1.13104 1.25397 1.44452 0.86586 0.80135 0.83780 0.77790 1.19832 1.21074 1.21097 1.20697 0.97687 0.91992 1.00732 0.91661 0.91117 0.92434 0.87070 0.87051 0.91632 0.92445 0.91117 0.91390 0.92458 0.94936 0.88459 0.93121 0.91776 0.92244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 9.52 36.01 0.34 -1.22 16 2 C -0.10 -1.72 5.89 -104.48 -0.62 -2.33 16 3 C -0.13 -2.05 9.69 -39.68 -0.38 -2.43 16 4 C -0.13 -2.03 9.68 -39.68 -0.38 -2.41 16 5 C -0.10 -1.75 5.89 -104.48 -0.62 -2.37 16 6 C -0.11 -1.61 9.14 36.01 0.33 -1.28 16 7 C -0.06 -1.13 5.74 -104.62 -0.60 -1.73 16 8 C -0.06 -1.21 5.74 -104.62 -0.60 -1.81 16 9 C -0.08 -1.64 4.97 -28.05 -0.14 -1.78 16 10 C -0.11 -2.66 5.14 -26.70 -0.14 -2.80 16 11 C 0.05 1.26 2.12 -91.74 -0.19 1.06 16 12 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16 13 C -0.51 -13.95 8.56 -34.44 -0.29 -14.25 16 14 H 0.06 1.49 7.75 -52.49 -0.41 1.08 16 15 C 0.06 1.67 5.28 -17.82 -0.09 1.58 16 16 N -0.89 -25.16 11.31 55.43 0.63 -24.54 16 17 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 16 18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 C -0.07 -1.59 3.71 -28.05 -0.10 -1.70 16 22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.07 0.97 5.94 -51.93 -0.31 0.66 16 24 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 25 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 26 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 29 H 0.07 1.04 6.71 -51.93 -0.35 0.70 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.06 1.04 6.28 -51.92 -0.33 0.71 16 32 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.10 2.56 5.92 -51.93 -0.31 2.25 16 34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 35 H 0.06 1.37 8.07 -51.93 -0.42 0.95 16 36 H 0.06 1.23 7.19 -51.93 -0.37 0.85 16 LS Contribution 282.30 15.07 4.25 4.25 Total: -1.00 -28.39 282.30 -9.05 -37.44 By element: Atomic # 1 Polarization: 5.60 SS G_CDS: -5.42 Total: 0.18 kcal Atomic # 6 Polarization: -29.98 SS G_CDS: -3.49 Total: -33.47 kcal Atomic # 7 Polarization: -25.16 SS G_CDS: 0.63 Total: -24.54 kcal Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -28.39 -9.05 -37.44 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259988727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.287 kcal (2) G-P(sol) polarization free energy of solvation -28.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds