Wall clock time and date at job start Mon Mar 30 2020 03:28:07
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50703 * 1
3 3 C 1.37971 * 119.72788 * 2 1
4 4 C 1.38225 * 119.76741 * 180.02562 * 3 2 1
5 5 C 1.37976 * 119.77610 * 359.88578 * 4 3 2
6 6 C 1.50699 * 119.73234 * 180.02562 * 5 4 3
7 7 C 1.38873 * 120.54271 * 0.02982 * 5 4 3
8 8 C 1.37703 * 119.67970 * 0.14693 * 7 5 4
9 9 C 1.50633 * 122.56415 * 179.69225 * 8 7 5
10 10 C 1.52736 * 110.58305 * 17.55441 * 9 8 7
11 11 C 1.53325 * 108.37235 * 308.91510 * 10 9 8
12 12 H 1.08998 * 109.68671 * 310.21536 * 11 10 9
13 13 C 1.50697 * 109.68187 * 189.69344 * 11 10 9
14 14 H 1.08001 * 120.00109 * 240.00402 * 13 11 10
15 15 C 1.37878 * 120.00193 * 60.00544 * 13 11 10
16 16 N 1.31519 * 119.99659 * 359.97438 * 15 13 11
17 17 Si 1.86793 * 120.00571 * 180.02562 * 15 13 11
18 18 H 1.48507 * 109.46843 * 359.97438 * 17 15 13
19 19 H 1.48499 * 109.47767 * 119.99735 * 17 15 13
20 20 H 1.48499 * 109.47133 * 240.00123 * 17 15 13
21 21 C 1.50629 * 117.75322 * 180.20729 * 7 5 4
22 22 H 1.09005 * 109.46933 * 89.99882 * 1 2 3
23 23 H 1.08994 * 109.47260 * 210.00678 * 1 2 3
24 24 H 1.09007 * 109.46777 * 330.00751 * 1 2 3
25 25 H 1.07996 * 120.11756 * 0.05137 * 3 2 1
26 26 H 1.08005 * 120.11562 * 179.91860 * 4 3 2
27 27 H 1.09001 * 109.47166 * 269.98454 * 6 5 4
28 28 H 1.09003 * 109.46570 * 29.98298 * 6 5 4
29 29 H 1.08992 * 109.47191 * 149.98049 * 6 5 4
30 30 H 1.08999 * 109.26059 * 257.26660 * 9 8 7
31 31 H 1.09008 * 109.25326 * 137.83851 * 9 8 7
32 32 H 1.08997 * 109.68144 * 68.64123 * 10 9 8
33 33 H 1.09004 * 109.68271 * 189.19780 * 10 9 8
34 34 H 0.96995 * 120.00058 * 180.02562 * 16 15 13
35 35 H 1.08997 * 109.25149 * 77.18767 * 21 7 5
36 36 H 1.09003 * 109.25992 * 317.75679 * 21 7 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1912 1.1981 0.0000
4 6 3.5735 1.1991 -0.0005
5 6 4.2595 0.0020 0.0013
6 6 5.7665 0.0042 0.0013
7 6 3.5727 -1.2050 0.0031
8 6 2.1956 -1.2060 -0.0001
9 6 1.3857 -2.4760 -0.0052
10 6 2.2455 -3.6629 0.4250
11 6 3.5261 -3.6627 -0.4182
12 1 3.2707 -3.5700 -1.4738
13 6 4.2840 -4.9451 -0.1902
14 1 5.2889 -4.9156 0.2046
15 6 3.6947 -6.1561 -0.4856
16 7 2.4709 -6.1920 -0.9659
17 14 4.6339 -7.7457 -0.2023
18 1 5.9805 -7.4349 0.3412
19 1 3.8924 -8.5931 0.7658
20 1 4.7758 -8.4729 -1.4893
21 6 4.3843 -2.4739 0.0099
22 1 -0.3633 0.0000 -1.0277
23 1 -0.3633 -0.8899 0.5139
24 1 -0.3633 0.8901 0.5138
25 1 1.6487 2.1319 0.0008
26 1 4.1147 2.1337 -0.0019
27 1 6.1298 0.0028 -1.0264
28 1 6.1284 0.8957 0.5135
29 1 6.1311 -0.8843 0.5168
30 1 1.0035 -2.6546 -1.0102
31 1 0.5477 -2.3707 0.6839
32 1 2.5006 -3.5679 1.4804
33 1 1.6981 -4.5912 0.2611
34 1 2.0562 -7.0439 -1.1734
35 1 4.7670 -2.6504 1.0151
36 1 5.2220 -2.3686 -0.6796
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000259988727.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:28:07
Heat of formation + Delta-G solvation = -9.151441 kcal
Electronic energy + Delta-G solvation = -16041.263371 eV
Core-core repulsion = 13681.576107 eV
Total energy + Delta-G solvation = -2359.687264 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 230.137 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.69781 -35.65110 -34.17880 -32.36109 -29.44023 -29.06715 -28.70584 -25.02541
-24.30169 -22.42903 -21.37219 -19.46238 -18.29230 -16.41179 -15.44666 -15.01861
-14.41413 -14.32096 -13.74994 -13.27871 -12.94761 -12.79835 -12.54920 -12.41927
-12.16114 -12.03449 -11.57887 -11.41823 -11.08288 -10.93756 -10.67936 -10.63039
-10.51008 -10.16269 -9.87226 -9.60173 -9.00036 -8.67098 -8.29250 -7.89065
-7.82934 -5.96936 -4.03420 1.81961 1.95106 3.30244 3.38507 3.42209
4.19812 4.44797 5.21409 5.24932 5.32726 5.42153 5.44749 5.52559
5.82911 5.85332 5.89883 5.94647 6.04664 6.15777 6.19332 6.22163
6.29383 6.44532 6.60573 6.66392 6.68326 6.86065 6.94426 7.01653
7.08824 7.22219 7.34511 7.55484 7.61802 7.77633 8.02548 8.14887
8.48131 9.00610 9.61069 11.08558
Molecular weight = 230.14amu
Principal moments of inertia in cm(-1)
A = 0.033927 B = 0.007697 C = 0.006406
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 825.096677 B = 3637.048212 C = 4369.806366
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.114 4.114
2 C -0.102 4.102
3 C -0.133 4.133
4 C -0.131 4.131
5 C -0.102 4.102
6 C -0.112 4.112
7 C -0.057 4.057
8 C -0.062 4.062
9 C -0.081 4.081
10 C -0.112 4.112
11 C 0.050 3.950
12 H 0.027 0.973
13 C -0.511 4.511
14 H 0.055 0.945
15 C 0.061 3.939
16 N -0.889 5.889
17 Si 0.889 3.111
18 H -0.274 1.274
19 H -0.285 1.285
20 H -0.285 1.285
21 C -0.074 4.074
22 H 0.065 0.935
23 H 0.070 0.930
24 H 0.057 0.943
25 H 0.111 0.889
26 H 0.111 0.889
27 H 0.065 0.935
28 H 0.057 0.943
29 H 0.070 0.930
30 H 0.068 0.932
31 H 0.057 0.943
32 H 0.032 0.968
33 H 0.097 0.903
34 H 0.259 0.741
35 H 0.064 0.936
36 H 0.059 0.941
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.781 11.568 1.922 11.752
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.170 4.170
2 C -0.102 4.102
3 C -0.151 4.151
4 C -0.149 4.149
5 C -0.102 4.102
6 C -0.169 4.169
7 C -0.057 4.057
8 C -0.062 4.062
9 C -0.118 4.118
10 C -0.150 4.150
11 C 0.032 3.968
12 H 0.045 0.955
13 C -0.549 4.549
14 H 0.073 0.927
15 C -0.140 4.140
16 N -0.528 5.528
17 Si 0.717 3.283
18 H -0.198 1.198
19 H -0.211 1.211
20 H -0.211 1.211
21 C -0.111 4.111
22 H 0.083 0.917
23 H 0.089 0.911
24 H 0.076 0.924
25 H 0.129 0.871
26 H 0.129 0.871
27 H 0.084 0.916
28 H 0.076 0.924
29 H 0.089 0.911
30 H 0.086 0.914
31 H 0.075 0.925
32 H 0.051 0.949
33 H 0.115 0.885
34 H 0.069 0.931
35 H 0.082 0.918
36 H 0.078 0.922
Dipole moment (debyes) X Y Z Total
from point charges -0.909 11.439 1.864 11.625
hybrid contribution 0.426 -0.734 0.095 0.854
sum -0.483 10.705 1.959 10.893
Atomic orbital electron populations
1.20822 0.92008 1.02302 1.01885 1.19892 0.95649 0.92898 1.01764
1.20732 0.94135 0.96844 1.03388 1.20758 0.94118 0.96908 1.03098
1.19931 0.95760 0.92851 1.01639 1.20786 0.91905 1.02282 1.01902
1.19923 0.93181 0.95183 0.97420 1.19752 0.93201 0.94751 0.98480
1.20647 0.97350 0.92774 1.01024 1.21652 0.98429 0.97214 0.97715
1.18653 0.91674 0.90966 0.95516 0.95480 1.21250 1.00338 0.90805
1.42545 0.92658 1.24960 0.94948 0.98967 0.95131 1.69889 1.13104
1.25397 1.44452 0.86586 0.80135 0.83780 0.77790 1.19832 1.21074
1.21097 1.20697 0.97687 0.91992 1.00732 0.91661 0.91117 0.92434
0.87070 0.87051 0.91632 0.92445 0.91117 0.91390 0.92458 0.94936
0.88459 0.93121 0.91776 0.92244
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.56 9.52 36.01 0.34 -1.22 16
2 C -0.10 -1.72 5.89 -104.48 -0.62 -2.33 16
3 C -0.13 -2.05 9.69 -39.68 -0.38 -2.43 16
4 C -0.13 -2.03 9.68 -39.68 -0.38 -2.41 16
5 C -0.10 -1.75 5.89 -104.48 -0.62 -2.37 16
6 C -0.11 -1.61 9.14 36.01 0.33 -1.28 16
7 C -0.06 -1.13 5.74 -104.62 -0.60 -1.73 16
8 C -0.06 -1.21 5.74 -104.62 -0.60 -1.81 16
9 C -0.08 -1.64 4.97 -28.05 -0.14 -1.78 16
10 C -0.11 -2.66 5.14 -26.70 -0.14 -2.80 16
11 C 0.05 1.26 2.12 -91.74 -0.19 1.06 16
12 H 0.03 0.75 8.10 -51.93 -0.42 0.33 16
13 C -0.51 -13.95 8.56 -34.44 -0.29 -14.25 16
14 H 0.06 1.49 7.75 -52.49 -0.41 1.08 16
15 C 0.06 1.67 5.28 -17.82 -0.09 1.58 16
16 N -0.89 -25.16 11.31 55.43 0.63 -24.54 16
17 Si 0.89 21.16 29.54 -169.99 -5.02 16.13 16
18 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16
19 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16
20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16
21 C -0.07 -1.59 3.71 -28.05 -0.10 -1.70 16
22 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16
23 H 0.07 0.97 5.94 -51.93 -0.31 0.66 16
24 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16
25 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16
26 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16
27 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16
28 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16
29 H 0.07 1.04 6.71 -51.93 -0.35 0.70 16
30 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16
31 H 0.06 1.04 6.28 -51.92 -0.33 0.71 16
32 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16
33 H 0.10 2.56 5.92 -51.93 -0.31 2.25 16
34 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16
35 H 0.06 1.37 8.07 -51.93 -0.42 0.95 16
36 H 0.06 1.23 7.19 -51.93 -0.37 0.85 16
LS Contribution 282.30 15.07 4.25 4.25
Total: -1.00 -28.39 282.30 -9.05 -37.44
By element:
Atomic # 1 Polarization: 5.60 SS G_CDS: -5.42 Total: 0.18 kcal
Atomic # 6 Polarization: -29.98 SS G_CDS: -3.49 Total: -33.47 kcal
Atomic # 7 Polarization: -25.16 SS G_CDS: 0.63 Total: -24.54 kcal
Atomic # 14 Polarization: 21.16 SS G_CDS: -5.02 Total: 16.13 kcal
Total LS contribution 4.25 Total: 4.25 kcal
Total: -28.39 -9.05 -37.44 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000259988727.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 28.287 kcal
(2) G-P(sol) polarization free energy of solvation -28.389 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.102 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.438 kcal
(6) G-S(sol) free energy of system = (1) + (5) -9.151 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds