Wall clock time and date at job start Mon Mar 30 2020 03:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37971 * 119.72788 * 2 1 4 4 C 1.38225 * 119.76741 * 180.02562 * 3 2 1 5 5 C 1.37976 * 119.77610 * 359.88578 * 4 3 2 6 6 C 1.50699 * 119.73234 * 180.02562 * 5 4 3 7 7 C 1.38873 * 120.54271 * 0.02982 * 5 4 3 8 8 C 1.37703 * 119.67970 * 0.14693 * 7 5 4 9 9 C 1.50633 * 122.56415 * 179.69225 * 8 7 5 10 10 C 1.52736 * 110.58305 * 17.55441 * 9 8 7 11 11 C 1.53325 * 108.37235 * 308.91510 * 10 9 8 12 12 H 1.08998 * 109.68671 * 310.21536 * 11 10 9 13 13 C 1.50697 * 109.68187 * 189.69344 * 11 10 9 14 14 H 1.08001 * 120.00109 * 240.00402 * 13 11 10 15 15 C 1.37878 * 120.00193 * 60.00544 * 13 11 10 16 16 N 1.31519 * 119.99659 * 359.97438 * 15 13 11 17 17 Si 1.86793 * 120.00571 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.46843 * 359.97438 * 17 15 13 19 19 H 1.48499 * 109.47767 * 119.99735 * 17 15 13 20 20 H 1.48499 * 109.47133 * 240.00123 * 17 15 13 21 21 C 1.50629 * 117.75322 * 180.20729 * 7 5 4 22 22 H 1.09005 * 109.46933 * 89.99882 * 1 2 3 23 23 H 1.08994 * 109.47260 * 210.00678 * 1 2 3 24 24 H 1.09007 * 109.46777 * 330.00751 * 1 2 3 25 25 H 1.07996 * 120.11756 * 0.05137 * 3 2 1 26 26 H 1.08005 * 120.11562 * 179.91860 * 4 3 2 27 27 H 1.09001 * 109.47166 * 269.98454 * 6 5 4 28 28 H 1.09003 * 109.46570 * 29.98298 * 6 5 4 29 29 H 1.08992 * 109.47191 * 149.98049 * 6 5 4 30 30 H 1.08999 * 109.26059 * 257.26660 * 9 8 7 31 31 H 1.09008 * 109.25326 * 137.83851 * 9 8 7 32 32 H 1.08997 * 109.68144 * 68.64123 * 10 9 8 33 33 H 1.09004 * 109.68271 * 189.19780 * 10 9 8 34 34 H 0.96995 * 120.00058 * 180.02562 * 16 15 13 35 35 H 1.08997 * 109.25149 * 77.18767 * 21 7 5 36 36 H 1.09003 * 109.25992 * 317.75679 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1981 0.0000 4 6 3.5735 1.1991 -0.0005 5 6 4.2595 0.0020 0.0013 6 6 5.7665 0.0042 0.0013 7 6 3.5727 -1.2050 0.0031 8 6 2.1956 -1.2060 -0.0001 9 6 1.3857 -2.4760 -0.0052 10 6 2.2455 -3.6629 0.4250 11 6 3.5261 -3.6627 -0.4182 12 1 3.2707 -3.5700 -1.4738 13 6 4.2840 -4.9451 -0.1902 14 1 5.2889 -4.9156 0.2046 15 6 3.6947 -6.1561 -0.4856 16 7 2.4709 -6.1920 -0.9659 17 14 4.6339 -7.7457 -0.2023 18 1 5.9805 -7.4349 0.3412 19 1 3.8924 -8.5931 0.7658 20 1 4.7758 -8.4729 -1.4893 21 6 4.3843 -2.4739 0.0099 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8899 0.5139 24 1 -0.3633 0.8901 0.5138 25 1 1.6487 2.1319 0.0008 26 1 4.1147 2.1337 -0.0019 27 1 6.1298 0.0028 -1.0264 28 1 6.1284 0.8957 0.5135 29 1 6.1311 -0.8843 0.5168 30 1 1.0035 -2.6546 -1.0102 31 1 0.5477 -2.3707 0.6839 32 1 2.5006 -3.5679 1.4804 33 1 1.6981 -4.5912 0.2611 34 1 2.0562 -7.0439 -1.1734 35 1 4.7670 -2.6504 1.0151 36 1 5.2220 -2.3686 -0.6796 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259988727.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:06 Heat of formation + Delta-G solvation = -22.272858 kcal Electronic energy + Delta-G solvation = -16041.832358 eV Core-core repulsion = 13681.576107 eV Total energy + Delta-G solvation = -2360.256251 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -41.09686 -37.36574 -35.47644 -34.30927 -31.05046 -30.61446 -29.97018 -26.95369 -25.49150 -24.09268 -23.05143 -20.79965 -20.00471 -18.44422 -16.99055 -16.46183 -16.07271 -15.89402 -15.06908 -14.75488 -14.62231 -14.28690 -13.90233 -13.84505 -13.71270 -13.32554 -13.01936 -12.89586 -12.71387 -12.66913 -12.46286 -12.11399 -11.92945 -11.75805 -11.70980 -11.53646 -10.82572 -10.61009 -10.38053 -9.30103 -9.11131 -8.08225 -6.22896 0.53147 0.61021 1.39930 1.41626 1.53071 2.43219 2.88659 3.18004 3.95158 3.99398 4.14502 4.18523 4.35506 4.42085 4.50802 4.59494 4.72368 4.76653 4.82520 4.86316 4.88845 4.93345 4.98682 5.05231 5.12289 5.23119 5.28810 5.42812 5.48746 5.50726 5.62592 5.71323 5.78869 5.96834 6.03281 6.15003 6.28832 6.40961 6.88575 7.44976 8.96264 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.033927 B = 0.007697 C = 0.006406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.096677 B = 3637.048212 C = 4369.806366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.108 4.108 3 C -0.127 4.127 4 C -0.126 4.126 5 C -0.110 4.110 6 C -0.111 4.111 7 C -0.089 4.089 8 C -0.090 4.090 9 C -0.070 4.070 10 C -0.105 4.105 11 C 0.049 3.951 12 H -0.010 1.010 13 C -0.534 4.534 14 H 0.053 0.947 15 C 0.012 3.988 16 N -0.915 5.915 17 Si 0.954 3.046 18 H -0.267 1.267 19 H -0.279 1.279 20 H -0.280 1.280 21 C -0.060 4.060 22 H 0.072 0.928 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.148 0.852 26 H 0.147 0.853 27 H 0.071 0.929 28 H 0.085 0.915 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.077 0.923 32 H 0.026 0.974 33 H 0.067 0.933 34 H 0.261 0.739 35 H 0.057 0.943 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.592 13.794 2.432 14.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.108 4.108 3 C -0.145 4.145 4 C -0.144 4.144 5 C -0.110 4.110 6 C -0.168 4.168 7 C -0.089 4.089 8 C -0.090 4.090 9 C -0.107 4.107 10 C -0.143 4.143 11 C 0.030 3.970 12 H 0.008 0.992 13 C -0.572 4.572 14 H 0.071 0.929 15 C -0.186 4.186 16 N -0.555 5.555 17 Si 0.780 3.220 18 H -0.192 1.192 19 H -0.205 1.205 20 H -0.206 1.206 21 C -0.097 4.097 22 H 0.091 0.909 23 H 0.083 0.917 24 H 0.103 0.897 25 H 0.165 0.835 26 H 0.165 0.835 27 H 0.090 0.910 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.072 0.928 31 H 0.095 0.905 32 H 0.045 0.955 33 H 0.085 0.915 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.716 13.672 2.376 13.896 hybrid contribution 0.355 -1.361 -0.082 1.409 sum -0.362 12.312 2.294 12.529 Atomic orbital electron populations 1.20867 0.89950 1.03389 1.02694 1.20203 0.97291 0.92351 1.00962 1.21189 0.94418 0.97597 1.01305 1.21189 0.94527 0.97475 1.01164 1.20209 0.97179 0.92492 1.01166 1.20819 0.90244 1.03142 1.02558 1.19893 0.93549 0.95288 1.00218 1.19773 0.93286 0.95249 1.00741 1.20461 0.97491 0.92208 1.00555 1.21447 0.98189 0.97598 0.97076 1.18575 0.92879 0.92006 0.93517 0.99204 1.21607 1.00549 0.92240 1.42847 0.92915 1.25746 0.95813 1.02206 0.94841 1.70027 1.14351 1.26186 1.44935 0.85562 0.79020 0.79644 0.77775 1.19159 1.20504 1.20636 1.20432 0.97317 0.91922 1.00070 0.90893 0.91696 0.89696 0.83464 0.83540 0.90988 0.89601 0.92282 0.92770 0.90476 0.95483 0.91467 0.93020 0.92438 0.92293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.79 9.52 71.24 0.68 -2.11 16 2 C -0.11 -3.40 5.89 -19.78 -0.12 -3.51 16 3 C -0.13 -3.42 9.69 22.20 0.22 -3.20 16 4 C -0.13 -3.43 9.68 22.20 0.22 -3.21 16 5 C -0.11 -3.60 5.89 -19.77 -0.12 -3.72 16 6 C -0.11 -2.98 9.14 71.24 0.65 -2.33 16 7 C -0.09 -3.56 5.74 -19.86 -0.11 -3.68 16 8 C -0.09 -3.52 5.74 -19.86 -0.11 -3.63 16 9 C -0.07 -2.93 4.97 29.74 0.15 -2.78 16 10 C -0.11 -5.23 5.14 30.62 0.16 -5.08 16 11 C 0.05 2.57 2.12 -11.52 -0.02 2.54 16 12 H -0.01 -0.60 8.10 -2.39 -0.02 -0.62 16 13 C -0.53 -30.32 8.56 25.60 0.22 -30.10 16 14 H 0.05 2.93 7.75 -2.91 -0.02 2.91 16 15 C 0.01 0.70 5.28 84.65 0.45 1.15 16 16 N -0.92 -53.67 11.31 21.45 0.24 -53.43 16 17 Si 0.95 44.21 29.54 68.60 2.03 46.24 16 18 H -0.27 -12.00 7.11 99.48 0.71 -11.30 16 19 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 20 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 21 C -0.06 -2.69 3.71 29.74 0.11 -2.58 16 22 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 23 H 0.06 1.67 5.94 -2.39 -0.01 1.66 16 24 H 0.08 1.63 8.08 -2.38 -0.02 1.61 16 25 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 26 H 0.15 2.95 8.06 -2.91 -0.02 2.93 16 27 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.09 1.79 8.08 -2.39 -0.02 1.77 16 29 H 0.06 1.70 6.71 -2.39 -0.02 1.69 16 30 H 0.05 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.08 2.82 6.28 -2.38 -0.01 2.81 16 32 H 0.03 1.32 8.10 -2.39 -0.02 1.30 16 33 H 0.07 3.73 5.92 -2.38 -0.01 3.71 16 34 H 0.26 14.45 8.31 -92.71 -0.77 13.68 16 35 H 0.06 2.56 8.07 -2.39 -0.02 2.54 16 36 H 0.06 2.53 7.19 -2.39 -0.02 2.51 16 Total: -1.00 -63.19 282.30 5.67 -57.52 By element: Atomic # 1 Polarization: 10.88 SS G_CDS: 1.05 Total: 11.93 kcal Atomic # 6 Polarization: -64.61 SS G_CDS: 2.36 Total: -62.25 kcal Atomic # 7 Polarization: -53.67 SS G_CDS: 0.24 Total: -53.43 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -63.19 5.67 -57.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259988727.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.244 kcal (2) G-P(sol) polarization free energy of solvation -63.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.516 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds