Wall clock time and date at job start Mon Mar 30 2020 03:28:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37978 * 119.72415 * 2 1 4 4 C 1.38223 * 119.77018 * 179.76881 * 3 2 1 5 5 C 1.37970 * 119.77295 * 0.38919 * 4 3 2 6 6 C 1.50696 * 119.73179 * 179.97438 * 5 4 3 7 7 C 1.38871 * 120.54405 * 359.89701 * 5 4 3 8 8 C 1.37705 * 119.68388 * 359.94141 * 7 5 4 9 9 C 1.50632 * 122.56239 * 180.39133 * 8 7 5 10 10 C 1.52739 * 110.58552 * 342.28637 * 9 8 7 11 11 C 1.53330 * 108.38563 * 51.09645 * 10 9 8 12 12 H 1.09002 * 109.67852 * 49.82502 * 11 10 9 13 13 C 1.50698 * 109.71510 * 170.36310 * 11 10 9 14 14 H 1.07990 * 120.00053 * 118.94672 * 13 11 10 15 15 C 1.37882 * 119.99754 * 298.95023 * 13 11 10 16 16 N 1.31517 * 120.00045 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99757 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47082 * 60.00019 * 17 15 13 19 19 H 1.48497 * 109.47219 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47078 * 300.00178 * 17 15 13 21 21 C 1.50633 * 117.75481 * 179.71898 * 7 5 4 22 22 H 1.09004 * 109.47169 * 89.99989 * 1 2 3 23 23 H 1.08998 * 109.46943 * 209.99372 * 1 2 3 24 24 H 1.08996 * 109.47451 * 329.99738 * 1 2 3 25 25 H 1.08002 * 120.11804 * 0.05481 * 3 2 1 26 26 H 1.08004 * 120.11204 * 180.35598 * 4 3 2 27 27 H 1.08992 * 109.47701 * 89.99662 * 6 5 4 28 28 H 1.09004 * 109.47272 * 209.99934 * 6 5 4 29 29 H 1.09002 * 109.46732 * 329.99287 * 6 5 4 30 30 H 1.08993 * 109.25591 * 222.00045 * 9 8 7 31 31 H 1.09001 * 109.22445 * 102.54880 * 9 8 7 32 32 H 1.09002 * 109.67935 * 291.37658 * 10 9 8 33 33 H 1.09002 * 109.68402 * 170.82094 * 10 9 8 34 34 H 0.97000 * 119.99264 * 180.02562 * 16 15 13 35 35 H 1.09007 * 109.25283 * 282.80076 * 21 7 5 36 36 H 1.08999 * 109.25090 * 42.23076 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1982 0.0000 4 6 3.5734 1.1993 0.0048 5 6 4.2595 0.0023 0.0015 6 6 5.7664 0.0046 0.0062 7 6 3.5728 -1.2047 -0.0045 8 6 2.1957 -1.2058 -0.0060 9 6 1.3860 -2.4761 -0.0038 10 6 2.2464 -3.6621 -0.4350 11 6 3.5262 -3.6636 0.4095 12 1 3.2696 -3.5735 1.4650 13 6 4.2856 -4.9448 0.1793 14 1 5.2845 -4.9143 -0.2300 15 6 3.7050 -6.1558 0.4913 16 7 2.4887 -6.1929 0.9902 17 14 4.6461 -7.7439 0.2054 18 1 5.8970 -7.7290 1.0056 19 1 3.8078 -8.8975 0.6197 20 1 4.9819 -7.8677 -1.2358 21 6 4.3845 -2.4735 -0.0144 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3634 0.8899 0.5138 25 1 1.6486 2.1321 0.0009 26 1 4.1145 2.1341 0.0107 27 1 6.1266 0.0006 1.0349 28 1 6.1328 -0.8825 -0.5106 29 1 6.1299 0.8975 -0.5026 30 1 0.5488 -2.3698 -0.6934 31 1 1.0035 -2.6561 1.0009 32 1 2.5029 -3.5652 -1.4900 33 1 1.6990 -4.5908 -0.2736 34 1 2.0805 -7.0449 1.2100 35 1 4.7680 -2.6471 -1.0200 36 1 5.2217 -2.3700 0.6759 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259988731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:09 Heat of formation + Delta-G solvation = -10.742116 kcal Electronic energy + Delta-G solvation = -16038.583279 eV Core-core repulsion = 13678.827038 eV Total energy + Delta-G solvation = -2359.756241 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.69741 -35.64897 -34.17392 -32.35795 -29.44264 -29.07480 -28.70315 -25.01881 -24.30025 -22.42995 -21.37222 -19.46813 -18.29663 -16.39471 -15.44877 -15.01809 -14.41228 -14.27490 -13.73698 -13.24268 -12.93673 -12.82317 -12.53352 -12.46621 -12.17315 -12.03245 -11.57278 -11.42560 -11.08835 -10.89221 -10.71397 -10.66259 -10.52731 -10.18559 -9.87086 -9.60389 -8.99419 -8.69409 -8.29153 -7.88949 -7.82790 -5.96833 -4.03056 1.81529 1.95042 3.32954 3.37676 3.40235 4.19079 4.45019 5.21031 5.25217 5.33167 5.41827 5.44089 5.54584 5.84680 5.86629 5.90342 5.94890 6.08236 6.10109 6.19280 6.22541 6.26771 6.43569 6.59569 6.66957 6.68635 6.85209 6.94332 7.01434 7.08122 7.21571 7.34188 7.54850 7.61620 7.77297 8.02592 8.13435 8.47979 9.00620 9.61257 11.09115 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.033912 B = 0.007691 C = 0.006405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.456776 B = 3639.907760 C = 4370.574218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.102 4.102 3 C -0.133 4.133 4 C -0.131 4.131 5 C -0.102 4.102 6 C -0.112 4.112 7 C -0.057 4.057 8 C -0.062 4.062 9 C -0.080 4.080 10 C -0.111 4.111 11 C 0.051 3.949 12 H 0.028 0.972 13 C -0.513 4.513 14 H 0.054 0.946 15 C 0.062 3.938 16 N -0.890 5.890 17 Si 0.889 3.111 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.278 1.278 21 C -0.074 4.074 22 H 0.064 0.936 23 H 0.069 0.931 24 H 0.057 0.943 25 H 0.111 0.889 26 H 0.111 0.889 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.057 0.943 30 H 0.055 0.945 31 H 0.068 0.932 32 H 0.032 0.968 33 H 0.095 0.905 34 H 0.260 0.740 35 H 0.064 0.936 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.816 11.576 -1.943 11.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.102 4.102 3 C -0.151 4.151 4 C -0.149 4.149 5 C -0.102 4.102 6 C -0.169 4.169 7 C -0.057 4.057 8 C -0.062 4.062 9 C -0.117 4.117 10 C -0.149 4.149 11 C 0.033 3.967 12 H 0.046 0.954 13 C -0.551 4.551 14 H 0.072 0.928 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.717 3.283 18 H -0.203 1.203 19 H -0.213 1.213 20 H -0.203 1.203 21 C -0.111 4.111 22 H 0.082 0.918 23 H 0.087 0.913 24 H 0.076 0.924 25 H 0.129 0.871 26 H 0.130 0.870 27 H 0.084 0.916 28 H 0.089 0.911 29 H 0.076 0.924 30 H 0.073 0.927 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.113 0.887 34 H 0.070 0.930 35 H 0.082 0.918 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.953 11.442 -1.875 11.634 hybrid contribution 0.448 -0.732 -0.127 0.868 sum -0.505 10.711 -2.003 10.908 Atomic orbital electron populations 1.20780 0.91987 1.02322 1.01735 1.19901 0.95642 0.92894 1.01759 1.20737 0.94140 0.96847 1.03386 1.20756 0.94119 0.96912 1.03095 1.19929 0.95763 0.92849 1.01618 1.20786 0.91903 1.02279 1.01913 1.19929 0.93190 0.95191 0.97423 1.19759 0.93201 0.94732 0.98476 1.20611 0.97335 0.92782 1.00963 1.21637 0.98392 0.97068 0.97767 1.18641 0.91620 0.90925 0.95550 0.95417 1.21171 1.00870 0.90878 1.42226 0.92763 1.24957 0.94948 0.98935 0.95093 1.69882 1.13682 1.25629 1.43653 0.86703 0.79886 0.83071 0.78593 1.20338 1.21331 1.20326 1.20700 0.97702 0.91990 1.00723 0.91756 0.91254 0.92351 0.87063 0.87047 0.91627 0.91114 0.92444 0.92651 0.91368 0.94905 0.88694 0.93002 0.91789 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.53 9.14 36.01 0.33 -1.20 16 2 C -0.10 -1.71 5.89 -104.48 -0.62 -2.33 16 3 C -0.13 -2.05 9.69 -39.68 -0.38 -2.43 16 4 C -0.13 -2.03 9.68 -39.69 -0.38 -2.41 16 5 C -0.10 -1.75 5.89 -104.49 -0.61 -2.36 16 6 C -0.11 -1.61 9.14 36.00 0.33 -1.28 16 7 C -0.06 -1.14 5.74 -104.61 -0.60 -1.74 16 8 C -0.06 -1.20 5.74 -104.62 -0.60 -1.80 16 9 C -0.08 -1.62 4.45 -28.05 -0.12 -1.74 16 10 C -0.11 -2.62 5.15 -26.69 -0.14 -2.76 16 11 C 0.05 1.28 2.10 -91.74 -0.19 1.08 16 12 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 13 C -0.51 -14.02 8.55 -34.44 -0.29 -14.32 16 14 H 0.05 1.45 7.75 -52.49 -0.41 1.05 16 15 C 0.06 1.70 5.28 -17.82 -0.09 1.60 16 16 N -0.89 -25.21 11.40 55.43 0.63 -24.58 16 17 Si 0.89 21.17 29.54 -169.99 -5.02 16.15 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 C -0.07 -1.59 3.71 -28.05 -0.10 -1.70 16 22 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 23 H 0.07 0.96 6.72 -51.93 -0.35 0.62 16 24 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 25 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 26 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 27 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 28 H 0.07 1.04 6.71 -51.93 -0.35 0.69 16 29 H 0.06 0.70 8.08 -51.93 -0.42 0.28 16 30 H 0.05 1.00 7.20 -51.93 -0.37 0.63 16 31 H 0.07 1.41 8.10 -51.93 -0.42 0.99 16 32 H 0.03 0.76 8.10 -51.93 -0.42 0.34 16 33 H 0.09 2.49 6.02 -51.93 -0.31 2.18 16 34 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 35 H 0.06 1.37 8.07 -51.93 -0.42 0.95 16 36 H 0.06 1.23 7.18 -51.93 -0.37 0.86 16 LS Contribution 283.19 15.07 4.27 4.27 Total: -1.00 -28.37 283.19 -9.12 -37.49 By element: Atomic # 1 Polarization: 5.57 SS G_CDS: -5.51 Total: 0.06 kcal Atomic # 6 Polarization: -29.90 SS G_CDS: -3.49 Total: -33.39 kcal Atomic # 7 Polarization: -25.21 SS G_CDS: 0.63 Total: -24.58 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Total LS contribution 4.27 Total: 4.27 kcal Total: -28.37 -9.12 -37.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259988731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.748 kcal (2) G-P(sol) polarization free energy of solvation -28.372 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds