Wall clock time and date at job start Mon Mar 30 2020 03:28:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.37978 * 119.72415 * 2 1 4 4 C 1.38223 * 119.77018 * 179.76881 * 3 2 1 5 5 C 1.37970 * 119.77295 * 0.38919 * 4 3 2 6 6 C 1.50696 * 119.73179 * 179.97438 * 5 4 3 7 7 C 1.38871 * 120.54405 * 359.89701 * 5 4 3 8 8 C 1.37705 * 119.68388 * 359.94141 * 7 5 4 9 9 C 1.50632 * 122.56239 * 180.39133 * 8 7 5 10 10 C 1.52739 * 110.58552 * 342.28637 * 9 8 7 11 11 C 1.53330 * 108.38563 * 51.09645 * 10 9 8 12 12 H 1.09002 * 109.67852 * 49.82502 * 11 10 9 13 13 C 1.50698 * 109.71510 * 170.36310 * 11 10 9 14 14 H 1.07990 * 120.00053 * 118.94672 * 13 11 10 15 15 C 1.37882 * 119.99754 * 298.95023 * 13 11 10 16 16 N 1.31517 * 120.00045 * 359.97438 * 15 13 11 17 17 Si 1.86800 * 119.99757 * 179.97438 * 15 13 11 18 18 H 1.48504 * 109.47082 * 60.00019 * 17 15 13 19 19 H 1.48497 * 109.47219 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47078 * 300.00178 * 17 15 13 21 21 C 1.50633 * 117.75481 * 179.71898 * 7 5 4 22 22 H 1.09004 * 109.47169 * 89.99989 * 1 2 3 23 23 H 1.08998 * 109.46943 * 209.99372 * 1 2 3 24 24 H 1.08996 * 109.47451 * 329.99738 * 1 2 3 25 25 H 1.08002 * 120.11804 * 0.05481 * 3 2 1 26 26 H 1.08004 * 120.11204 * 180.35598 * 4 3 2 27 27 H 1.08992 * 109.47701 * 89.99662 * 6 5 4 28 28 H 1.09004 * 109.47272 * 209.99934 * 6 5 4 29 29 H 1.09002 * 109.46732 * 329.99287 * 6 5 4 30 30 H 1.08993 * 109.25591 * 222.00045 * 9 8 7 31 31 H 1.09001 * 109.22445 * 102.54880 * 9 8 7 32 32 H 1.09002 * 109.67935 * 291.37658 * 10 9 8 33 33 H 1.09002 * 109.68402 * 170.82094 * 10 9 8 34 34 H 0.97000 * 119.99264 * 180.02562 * 16 15 13 35 35 H 1.09007 * 109.25283 * 282.80076 * 21 7 5 36 36 H 1.08999 * 109.25090 * 42.23076 * 21 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1912 1.1982 0.0000 4 6 3.5734 1.1993 0.0048 5 6 4.2595 0.0023 0.0015 6 6 5.7664 0.0046 0.0062 7 6 3.5728 -1.2047 -0.0045 8 6 2.1957 -1.2058 -0.0060 9 6 1.3860 -2.4761 -0.0038 10 6 2.2464 -3.6621 -0.4350 11 6 3.5262 -3.6636 0.4095 12 1 3.2696 -3.5735 1.4650 13 6 4.2856 -4.9448 0.1793 14 1 5.2845 -4.9143 -0.2300 15 6 3.7050 -6.1558 0.4913 16 7 2.4887 -6.1929 0.9902 17 14 4.6461 -7.7439 0.2054 18 1 5.8970 -7.7290 1.0056 19 1 3.8078 -8.8975 0.6197 20 1 4.9819 -7.8677 -1.2358 21 6 4.3845 -2.4735 -0.0144 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5137 24 1 -0.3634 0.8899 0.5138 25 1 1.6486 2.1321 0.0009 26 1 4.1145 2.1341 0.0107 27 1 6.1266 0.0006 1.0349 28 1 6.1328 -0.8825 -0.5106 29 1 6.1299 0.8975 -0.5026 30 1 0.5488 -2.3698 -0.6934 31 1 1.0035 -2.6561 1.0009 32 1 2.5029 -3.5652 -1.4900 33 1 1.6990 -4.5908 -0.2736 34 1 2.0805 -7.0449 1.2100 35 1 4.7680 -2.6471 -1.0200 36 1 5.2217 -2.3700 0.6759 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259988731.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:08 Heat of formation + Delta-G solvation = -23.830129 kcal Electronic energy + Delta-G solvation = -16039.150818 eV Core-core repulsion = 13678.827038 eV Total energy + Delta-G solvation = -2360.323780 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.09586 -37.36300 -35.47067 -34.30884 -31.05173 -30.62373 -29.96541 -26.94778 -25.48851 -24.09289 -23.05292 -20.80474 -20.00800 -18.43404 -16.98560 -16.46358 -16.07993 -15.83885 -15.04779 -14.73430 -14.61442 -14.30858 -13.94636 -13.81887 -13.69111 -13.32892 -13.03558 -12.90981 -12.68651 -12.64379 -12.50425 -12.14064 -11.96176 -11.73974 -11.73427 -11.53367 -10.82062 -10.63718 -10.38175 -9.30228 -9.10637 -8.08369 -6.22739 0.52868 0.60995 1.41511 1.42861 1.50486 2.43435 2.88071 3.18374 3.94941 3.99056 4.14669 4.18451 4.40312 4.43146 4.49552 4.57192 4.72308 4.78870 4.83693 4.85648 4.89239 4.92138 4.98875 5.02207 5.11749 5.22398 5.27991 5.43137 5.47564 5.50482 5.62326 5.71263 5.78569 5.96604 6.02702 6.13611 6.28741 6.40516 6.88526 7.45019 8.96359 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.033912 B = 0.007691 C = 0.006405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 825.456776 B = 3639.907760 C = 4370.574218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.108 4.108 3 C -0.127 4.127 4 C -0.126 4.126 5 C -0.110 4.110 6 C -0.111 4.111 7 C -0.090 4.090 8 C -0.091 4.091 9 C -0.069 4.069 10 C -0.103 4.103 11 C 0.049 3.951 12 H -0.010 1.010 13 C -0.537 4.537 14 H 0.053 0.947 15 C 0.013 3.987 16 N -0.916 5.916 17 Si 0.954 3.046 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.271 1.271 21 C -0.061 4.061 22 H 0.077 0.923 23 H 0.059 0.941 24 H 0.083 0.917 25 H 0.148 0.852 26 H 0.147 0.853 27 H 0.071 0.929 28 H 0.058 0.942 29 H 0.085 0.915 30 H 0.074 0.926 31 H 0.054 0.946 32 H 0.027 0.973 33 H 0.064 0.936 34 H 0.261 0.739 35 H 0.057 0.943 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.594 13.816 -2.466 14.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.108 4.108 3 C -0.145 4.145 4 C -0.143 4.143 5 C -0.110 4.110 6 C -0.168 4.168 7 C -0.090 4.090 8 C -0.091 4.091 9 C -0.105 4.105 10 C -0.142 4.142 11 C 0.031 3.969 12 H 0.008 0.992 13 C -0.575 4.575 14 H 0.071 0.929 15 C -0.186 4.186 16 N -0.555 5.555 17 Si 0.779 3.221 18 H -0.197 1.197 19 H -0.209 1.209 20 H -0.196 1.196 21 C -0.097 4.097 22 H 0.095 0.905 23 H 0.078 0.922 24 H 0.102 0.898 25 H 0.165 0.835 26 H 0.165 0.835 27 H 0.090 0.910 28 H 0.077 0.923 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.073 0.927 32 H 0.046 0.954 33 H 0.083 0.917 34 H 0.070 0.930 35 H 0.076 0.924 36 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -0.726 13.690 -2.401 13.918 hybrid contribution 0.368 -1.360 0.052 1.410 sum -0.358 12.330 -2.349 12.557 Atomic orbital electron populations 1.20829 0.89930 1.03178 1.02796 1.20210 0.97286 0.92348 1.00945 1.21192 0.94421 0.97597 1.01306 1.21188 0.94529 0.97479 1.01150 1.20206 0.97181 0.92487 1.01159 1.20819 0.90242 1.03151 1.02556 1.19899 0.93555 0.95298 1.00213 1.19780 0.93288 0.95225 1.00760 1.20419 0.97429 0.92229 1.00469 1.21432 0.98148 0.97434 0.97144 1.18563 0.92827 0.91989 0.93532 0.99174 1.21554 1.01155 0.92302 1.42489 0.92873 1.25748 0.95812 1.02194 0.94800 1.70026 1.14954 1.26331 1.44201 0.85678 0.78665 0.78989 0.78730 1.19679 1.20855 1.19609 1.20434 0.97325 0.91907 1.00081 0.90473 0.92182 0.89780 0.83450 0.83534 0.90998 0.92268 0.89599 0.90743 0.92738 0.95425 0.91724 0.93005 0.92419 0.92281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.75 9.14 71.24 0.65 -2.09 16 2 C -0.11 -3.39 5.89 -19.77 -0.12 -3.51 16 3 C -0.13 -3.41 9.69 22.20 0.22 -3.20 16 4 C -0.13 -3.42 9.68 22.20 0.22 -3.20 16 5 C -0.11 -3.59 5.89 -19.78 -0.12 -3.71 16 6 C -0.11 -2.98 9.14 71.23 0.65 -2.33 16 7 C -0.09 -3.57 5.74 -19.86 -0.11 -3.68 16 8 C -0.09 -3.52 5.74 -19.86 -0.11 -3.63 16 9 C -0.07 -2.86 4.45 29.74 0.13 -2.72 16 10 C -0.10 -5.16 5.15 30.62 0.16 -5.00 16 11 C 0.05 2.60 2.10 -11.52 -0.02 2.58 16 12 H -0.01 -0.59 8.10 -2.39 -0.02 -0.61 16 13 C -0.54 -30.48 8.55 25.60 0.22 -30.26 16 14 H 0.05 2.94 7.75 -2.92 -0.02 2.91 16 15 C 0.01 0.74 5.28 84.66 0.45 1.19 16 16 N -0.92 -53.83 11.40 21.45 0.24 -53.58 16 17 Si 0.95 44.18 29.54 68.60 2.03 46.21 16 18 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 19 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 20 H -0.27 -12.18 7.11 99.48 0.71 -11.48 16 21 C -0.06 -2.69 3.71 29.74 0.11 -2.58 16 22 H 0.08 1.72 8.14 -2.38 -0.02 1.70 16 23 H 0.06 1.59 6.72 -2.39 -0.02 1.57 16 24 H 0.08 1.64 8.08 -2.39 -0.02 1.62 16 25 H 0.15 2.89 8.06 -2.91 -0.02 2.87 16 26 H 0.15 2.95 8.06 -2.91 -0.02 2.92 16 27 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 28 H 0.06 1.70 6.71 -2.38 -0.02 1.69 16 29 H 0.09 1.79 8.08 -2.39 -0.02 1.77 16 30 H 0.07 2.73 7.20 -2.39 -0.02 2.71 16 31 H 0.05 2.36 8.10 -2.39 -0.02 2.34 16 32 H 0.03 1.34 8.10 -2.39 -0.02 1.33 16 33 H 0.06 3.58 6.02 -2.39 -0.01 3.57 16 34 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.06 2.56 8.07 -2.38 -0.02 2.54 16 36 H 0.06 2.54 7.18 -2.39 -0.02 2.52 16 Total: -1.00 -63.20 283.19 5.63 -57.57 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: 1.05 Total: 11.95 kcal Atomic # 6 Polarization: -64.47 SS G_CDS: 2.31 Total: -62.15 kcal Atomic # 7 Polarization: -53.83 SS G_CDS: 0.24 Total: -53.58 kcal Atomic # 14 Polarization: 44.18 SS G_CDS: 2.03 Total: 46.21 kcal Total: -63.20 5.63 -57.57 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259988731.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.743 kcal (2) G-P(sol) polarization free energy of solvation -63.202 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.573 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds