Wall clock time and date at job start Mon Mar 30 2020 02:55:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46807 * 2 1 4 4 C 1.50697 * 109.47091 * 240.00210 * 2 1 3 5 5 H 1.08005 * 120.00102 * 239.78392 * 4 2 1 6 6 C 1.37880 * 120.00403 * 59.77671 * 4 2 1 7 7 N 1.31514 * 119.99643 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00189 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.46900 * 60.00484 * 8 6 4 10 10 H 1.48499 * 109.46974 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47504 * 300.00199 * 8 6 4 12 12 C 1.50697 * 109.47262 * 120.00018 * 2 1 3 13 13 C 1.37903 * 120.15397 * 245.01874 * 12 2 1 14 14 C 1.38730 * 120.44929 * 179.97438 * 13 12 2 15 15 C 1.36638 * 120.66998 * 0.03947 * 14 13 12 16 16 C 1.39701 * 119.88836 * 359.96536 * 15 14 13 17 17 N 1.35783 * 133.60510 * 179.97438 * 16 15 14 18 18 C 1.30108 * 109.64646 * 180.02562 * 17 16 15 19 19 N 1.36048 * 110.10487 * 359.97438 * 18 17 16 20 20 H 0.96995 * 126.34362 * 179.97438 * 19 18 17 21 21 C 1.38055 * 107.30402 * 359.97438 * 19 18 17 22 22 H 1.09000 * 109.47100 * 299.99928 * 1 2 3 23 23 H 1.08997 * 109.47328 * 60.00033 * 1 2 3 24 24 H 1.09001 * 109.46946 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47142 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46894 * 299.99725 * 3 2 1 27 27 H 1.09000 * 109.47231 * 60.00153 * 3 2 1 28 28 H 0.96999 * 120.00268 * 179.97438 * 7 6 4 29 29 H 1.07996 * 119.77464 * 359.97438 * 13 12 2 30 30 H 1.07996 * 119.66152 * 180.02562 * 14 13 12 31 31 H 1.08002 * 120.05440 * 179.97438 * 15 14 13 32 32 H 1.08003 * 124.95032 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6561 -1.5865 -1.1314 6 6 1.6955 -0.2420 -2.4828 7 7 0.9362 0.8250 -2.6034 8 14 2.3187 -1.1221 -4.0079 9 1 1.8286 -2.5239 -4.0055 10 1 1.8197 -0.4249 -5.2204 11 1 3.8036 -1.1169 -4.0105 12 6 2.0323 -0.7104 1.2304 13 6 2.7380 -0.0169 2.1911 14 6 3.2029 -0.6647 3.3264 15 6 2.9710 -1.9984 3.5121 16 6 2.2584 -2.7213 2.5523 17 7 1.8769 -4.0205 2.4511 18 6 1.2193 -4.1982 1.3426 19 7 1.1331 -3.0263 0.6570 20 1 0.6945 -2.8912 -0.1976 21 6 1.7854 -2.0652 1.4030 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 0.6994 1.1548 -3.4844 29 1 2.9301 1.0375 2.0587 30 1 3.7538 -0.1092 4.0708 31 1 3.3378 -2.4927 4.3995 32 1 0.8019 -5.1389 1.0148 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260016313.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:28 Heat of formation + Delta-G solvation = 60.883017 kcal Electronic energy + Delta-G solvation = -16132.898336 eV Core-core repulsion = 13672.707651 eV Total energy + Delta-G solvation = -2460.190685 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -41.44758 -37.34735 -35.19459 -32.31071 -31.10088 -28.82262 -28.22239 -25.77054 -25.30465 -22.74125 -21.46819 -21.00910 -18.90669 -17.37520 -16.36385 -15.58981 -15.27483 -14.66879 -14.47463 -13.69160 -13.21345 -13.07839 -12.80539 -11.96457 -11.61957 -11.35295 -11.25233 -11.05800 -10.96030 -10.82676 -10.52675 -10.30313 -9.95082 -9.82850 -9.71912 -9.10997 -8.95645 -8.49587 -7.70943 -7.23658 -6.12577 -4.25291 1.70029 2.25890 3.17701 3.24925 3.27904 3.46072 3.70878 4.26754 4.60579 4.80459 5.12814 5.33883 5.67294 5.81351 6.10608 6.14205 6.16316 6.38806 6.56629 6.68539 6.76067 6.90743 6.93230 7.14464 7.18894 7.24307 7.29417 7.53942 7.55034 7.64167 7.92462 8.00435 8.09379 8.29334 8.44706 8.76178 9.41273 10.87254 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027516 B = 0.010579 C = 0.008758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.354658 B = 2646.066067 C = 3196.189630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.094 3.906 3 C -0.131 4.131 4 C -0.510 4.510 5 H 0.054 0.946 6 C 0.069 3.931 7 N -0.880 5.880 8 Si 0.890 3.110 9 H -0.278 1.278 10 H -0.286 1.286 11 H -0.277 1.277 12 C -0.016 4.016 13 C -0.136 4.136 14 C -0.123 4.123 15 C -0.101 4.101 16 C 0.034 3.966 17 N -0.511 5.511 18 C 0.239 3.761 19 N -0.581 5.581 20 H 0.430 0.570 21 C 0.069 3.931 22 H 0.012 0.988 23 H 0.089 0.911 24 H 0.019 0.981 25 H 0.030 0.970 26 H 0.085 0.915 27 H 0.014 0.986 28 H 0.262 0.738 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.115 0.885 32 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.175 -3.448 5.197 6.239 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.094 3.906 3 C -0.189 4.189 4 C -0.548 4.548 5 H 0.072 0.928 6 C -0.133 4.133 7 N -0.518 5.518 8 Si 0.718 3.282 9 H -0.204 1.204 10 H -0.212 1.212 11 H -0.202 1.202 12 C -0.018 4.018 13 C -0.156 4.156 14 C -0.143 4.143 15 C -0.120 4.120 16 C -0.085 4.085 17 N -0.233 5.233 18 C -0.048 4.048 19 N -0.192 5.192 20 H 0.271 0.729 21 C -0.041 4.041 22 H 0.031 0.969 23 H 0.108 0.892 24 H 0.038 0.962 25 H 0.049 0.951 26 H 0.103 0.897 27 H 0.033 0.967 28 H 0.073 0.927 29 H 0.145 0.855 30 H 0.135 0.865 31 H 0.133 0.867 32 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -0.065 -3.945 5.682 6.918 hybrid contribution -0.013 0.057 -1.955 1.956 sum -0.077 -3.888 3.728 5.387 Atomic orbital electron populations 1.21810 0.97115 0.98626 1.00766 1.17253 0.92312 0.92495 0.88583 1.21859 0.98684 0.97852 1.00478 1.21004 1.31588 1.12523 0.89681 0.92806 1.24912 0.94752 0.94906 0.98732 1.69794 1.35952 1.22536 1.23516 0.86685 0.79470 0.79625 0.82408 1.20399 1.21163 1.20230 1.19701 0.95605 0.89560 0.96928 1.20943 1.00518 1.00232 0.93871 1.20543 1.01511 0.94045 0.98197 1.19705 1.00788 0.93475 0.98072 1.19059 1.03329 0.90124 0.95954 1.70338 1.17180 1.16803 1.18943 1.25138 0.99067 0.91074 0.89545 1.43339 1.46463 1.07949 1.21475 0.72935 1.18722 1.00295 0.91855 0.93259 0.96893 0.89242 0.96200 0.95056 0.89676 0.96668 0.92743 0.85474 0.86542 0.86713 0.77737 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.11 37.16 0.30 -2.54 16 2 C 0.09 2.17 0.59 -156.81 -0.09 2.08 16 3 C -0.13 -2.98 6.93 37.16 0.26 -2.72 16 4 C -0.51 -12.73 6.95 -34.44 -0.24 -12.97 16 5 H 0.05 1.39 7.47 -52.48 -0.39 1.00 16 6 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 7 N -0.88 -22.64 9.35 55.43 0.52 -22.12 16 8 Si 0.89 19.94 29.54 -169.99 -5.02 14.92 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.42 7.11 56.52 0.40 -6.01 16 11 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 12 C -0.02 -0.34 4.72 -104.54 -0.49 -0.83 16 13 C -0.14 -2.64 8.99 -39.52 -0.36 -3.00 16 14 C -0.12 -2.12 9.96 -39.98 -0.40 -2.52 16 15 C -0.10 -1.84 10.05 -39.61 -0.40 -2.24 16 16 C 0.03 0.69 7.23 -84.70 -0.61 0.07 16 17 N -0.51 -9.79 11.27 -12.05 -0.14 -9.92 16 18 C 0.24 3.87 12.97 -89.77 -1.16 2.70 16 19 N -0.58 -10.67 5.62 -11.76 -0.07 -10.73 16 20 H 0.43 7.60 7.66 -40.82 -0.31 7.28 16 21 C 0.07 1.45 5.99 -83.99 -0.50 0.95 16 22 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 23 H 0.09 2.19 6.05 -51.93 -0.31 1.88 16 24 H 0.02 0.41 6.73 -51.93 -0.35 0.06 16 25 H 0.03 0.69 7.75 -51.93 -0.40 0.29 16 26 H 0.08 2.11 6.09 -51.93 -0.32 1.79 16 27 H 0.01 0.30 7.28 -51.93 -0.38 -0.08 16 28 H 0.26 6.55 8.31 -40.82 -0.34 6.21 16 29 H 0.13 2.32 5.90 -52.49 -0.31 2.01 16 30 H 0.12 1.62 8.06 -52.49 -0.42 1.19 16 31 H 0.11 1.83 8.06 -52.49 -0.42 1.41 16 32 H 0.21 2.20 8.06 -52.48 -0.42 1.78 16 LS Contribution 260.29 15.07 3.92 3.92 Total: -1.00 -28.13 260.29 -8.17 -36.30 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -3.60 Total: 6.99 kcal Atomic # 6 Polarization: -15.57 SS G_CDS: -3.79 Total: -19.36 kcal Atomic # 7 Polarization: -43.09 SS G_CDS: 0.32 Total: -42.78 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -5.02 Total: 14.92 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -28.13 -8.17 -36.30 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260016313.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.186 kcal (2) G-P(sol) polarization free energy of solvation -28.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.303 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds