Wall clock time and date at job start Mon Mar 30 2020 02:55:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.46807 * 2 1 4 4 C 1.50697 * 109.47091 * 240.00210 * 2 1 3 5 5 H 1.08005 * 120.00102 * 239.78392 * 4 2 1 6 6 C 1.37880 * 120.00403 * 59.77671 * 4 2 1 7 7 N 1.31514 * 119.99643 * 0.02562 * 6 4 2 8 8 Si 1.86796 * 120.00189 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.46900 * 60.00484 * 8 6 4 10 10 H 1.48499 * 109.46974 * 180.02562 * 8 6 4 11 11 H 1.48494 * 109.47504 * 300.00199 * 8 6 4 12 12 C 1.50697 * 109.47262 * 120.00018 * 2 1 3 13 13 C 1.37903 * 120.15397 * 245.01874 * 12 2 1 14 14 C 1.38730 * 120.44929 * 179.97438 * 13 12 2 15 15 C 1.36638 * 120.66998 * 0.03947 * 14 13 12 16 16 C 1.39701 * 119.88836 * 359.96536 * 15 14 13 17 17 N 1.35783 * 133.60510 * 179.97438 * 16 15 14 18 18 C 1.30108 * 109.64646 * 180.02562 * 17 16 15 19 19 N 1.36048 * 110.10487 * 359.97438 * 18 17 16 20 20 H 0.96995 * 126.34362 * 179.97438 * 19 18 17 21 21 C 1.38055 * 107.30402 * 359.97438 * 19 18 17 22 22 H 1.09000 * 109.47100 * 299.99928 * 1 2 3 23 23 H 1.08997 * 109.47328 * 60.00033 * 1 2 3 24 24 H 1.09001 * 109.46946 * 180.02562 * 1 2 3 25 25 H 1.09000 * 109.47142 * 180.02562 * 3 2 1 26 26 H 1.09003 * 109.46894 * 299.99725 * 3 2 1 27 27 H 1.09000 * 109.47231 * 60.00153 * 3 2 1 28 28 H 0.96999 * 120.00268 * 179.97438 * 7 6 4 29 29 H 1.07996 * 119.77464 * 359.97438 * 13 12 2 30 30 H 1.07996 * 119.66152 * 180.02562 * 14 13 12 31 31 H 1.08002 * 120.05440 * 179.97438 * 15 14 13 32 32 H 1.08003 * 124.95032 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7103 -1.2305 5 1 2.6561 -1.5865 -1.1314 6 6 1.6955 -0.2420 -2.4828 7 7 0.9362 0.8250 -2.6034 8 14 2.3187 -1.1221 -4.0079 9 1 1.8286 -2.5239 -4.0055 10 1 1.8197 -0.4249 -5.2204 11 1 3.8036 -1.1169 -4.0105 12 6 2.0323 -0.7104 1.2304 13 6 2.7380 -0.0169 2.1911 14 6 3.2029 -0.6647 3.3264 15 6 2.9710 -1.9984 3.5121 16 6 2.2584 -2.7213 2.5523 17 7 1.8769 -4.0205 2.4511 18 6 1.2193 -4.1982 1.3426 19 7 1.1331 -3.0263 0.6570 20 1 0.6945 -2.8912 -0.1976 21 6 1.7854 -2.0652 1.4030 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5138 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 3.1299 1.4426 -0.0005 26 1 1.6766 1.9563 -0.8900 27 1 1.6766 1.9564 0.8900 28 1 0.6994 1.1548 -3.4844 29 1 2.9301 1.0375 2.0587 30 1 3.7538 -0.1092 4.0708 31 1 3.3378 -2.4927 4.3995 32 1 0.8019 -5.1389 1.0148 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260016313.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:27 Heat of formation + Delta-G solvation = 46.436029 kcal Electronic energy + Delta-G solvation = -16133.524805 eV Core-core repulsion = 13672.707651 eV Total energy + Delta-G solvation = -2460.817154 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -42.85801 -38.90642 -36.80658 -33.96144 -32.73962 -30.25643 -29.77068 -27.55009 -27.22155 -24.20804 -22.91442 -22.50024 -20.53890 -18.91512 -17.93998 -17.24873 -16.85769 -16.25945 -15.92205 -15.25179 -14.84160 -14.63747 -14.34610 -13.62611 -13.36388 -13.02293 -12.93649 -12.70508 -12.61193 -12.45293 -12.26728 -12.09232 -11.60123 -11.49936 -11.33728 -10.80754 -10.63552 -10.40783 -9.14101 -8.73137 -8.03065 -6.21056 0.27578 0.81333 1.38695 1.43505 1.48157 2.06990 2.35450 2.41833 3.11662 3.20812 3.55011 3.98475 4.31414 4.42373 4.60727 4.68672 4.74521 4.80138 4.96045 5.00986 5.05635 5.12979 5.36181 5.45029 5.56366 5.60480 5.71742 5.76021 5.84440 6.11174 6.16603 6.24193 6.41775 6.68251 6.84069 7.05548 7.47100 8.94188 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.027516 B = 0.010579 C = 0.008758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1017.354658 B = 2646.066067 C = 3196.189630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C 0.091 3.909 3 C -0.123 4.123 4 C -0.513 4.513 5 H 0.040 0.960 6 C 0.033 3.967 7 N -0.898 5.898 8 Si 0.940 3.060 9 H -0.270 1.270 10 H -0.286 1.286 11 H -0.284 1.284 12 C -0.045 4.045 13 C -0.142 4.142 14 C -0.115 4.115 15 C -0.106 4.106 16 C 0.014 3.986 17 N -0.537 5.537 18 C 0.258 3.742 19 N -0.587 5.587 20 H 0.430 0.570 21 C 0.043 3.957 22 H 0.018 0.982 23 H 0.067 0.933 24 H 0.023 0.977 25 H 0.026 0.974 26 H 0.061 0.939 27 H 0.032 0.968 28 H 0.261 0.739 29 H 0.135 0.865 30 H 0.155 0.845 31 H 0.137 0.863 32 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.137 -4.461 5.995 7.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.090 3.910 3 C -0.180 4.180 4 C -0.551 4.551 5 H 0.059 0.941 6 C -0.168 4.168 7 N -0.536 5.536 8 Si 0.767 3.233 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.210 1.210 12 C -0.047 4.047 13 C -0.162 4.162 14 C -0.135 4.135 15 C -0.125 4.125 16 C -0.104 4.104 17 N -0.258 5.258 18 C -0.029 4.029 19 N -0.198 5.198 20 H 0.271 0.729 21 C -0.067 4.067 22 H 0.037 0.963 23 H 0.086 0.914 24 H 0.042 0.958 25 H 0.045 0.955 26 H 0.080 0.920 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.152 0.848 30 H 0.173 0.827 31 H 0.155 0.845 32 H 0.273 0.727 Dipole moment (debyes) X Y Z Total from point charges 0.246 -4.959 6.488 8.170 hybrid contribution -0.105 0.332 -2.154 2.182 sum 0.141 -4.627 4.334 6.341 Atomic orbital electron populations 1.21664 0.97211 0.98609 0.99842 1.17202 0.92298 0.92481 0.88979 1.21734 0.98279 0.97896 1.00114 1.21100 1.31140 1.12140 0.90734 0.94143 1.25445 0.95073 0.95508 1.00743 1.69908 1.36664 1.23324 1.23704 0.85901 0.78332 0.79184 0.79881 1.19492 1.21145 1.21015 1.19678 0.97626 0.90293 0.97147 1.21174 1.00091 1.00697 0.94251 1.20883 1.00710 0.93910 0.98004 1.20101 1.00105 0.93920 0.98412 1.19501 1.03786 0.90816 0.96314 1.70369 1.18731 1.16304 1.20444 1.26179 0.96804 0.91862 0.88078 1.43428 1.46532 1.08284 1.21571 0.72903 1.18896 1.01445 0.92120 0.94260 0.96316 0.91398 0.95766 0.95452 0.92022 0.94900 0.92957 0.84776 0.82744 0.84477 0.72679 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.24 8.11 71.98 0.58 -4.66 16 2 C 0.09 4.19 0.59 -53.68 -0.03 4.16 16 3 C -0.12 -5.58 6.93 71.98 0.50 -5.08 16 4 C -0.51 -25.70 6.95 25.60 0.18 -25.52 16 5 H 0.04 2.10 7.47 -2.91 -0.02 2.08 16 6 C 0.03 1.64 5.15 84.66 0.44 2.07 16 7 N -0.90 -46.63 9.35 21.45 0.20 -46.43 16 8 Si 0.94 40.84 29.54 68.60 2.03 42.87 16 9 H -0.27 -11.26 7.11 99.48 0.71 -10.55 16 10 H -0.29 -12.33 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 12 C -0.04 -1.92 4.72 -19.81 -0.09 -2.02 16 13 C -0.14 -5.35 8.99 22.31 0.20 -5.15 16 14 C -0.12 -3.69 9.96 22.01 0.22 -3.48 16 15 C -0.11 -3.63 10.05 22.25 0.22 -3.41 16 16 C 0.01 0.54 7.23 39.45 0.29 0.82 16 17 N -0.54 -19.51 11.27 -192.02 -2.16 -21.67 16 18 C 0.26 7.72 12.97 180.05 2.33 10.06 16 19 N -0.59 -20.87 5.62 -191.12 -1.07 -21.95 16 20 H 0.43 14.89 7.66 -92.71 -0.71 14.18 16 21 C 0.04 1.78 5.99 38.86 0.23 2.01 16 22 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 23 H 0.07 3.37 6.05 -2.39 -0.01 3.35 16 24 H 0.02 1.02 6.73 -2.39 -0.02 1.00 16 25 H 0.03 1.21 7.75 -2.39 -0.02 1.19 16 26 H 0.06 3.09 6.09 -2.39 -0.01 3.07 16 27 H 0.03 1.32 7.28 -2.39 -0.02 1.31 16 28 H 0.26 13.13 8.31 -92.71 -0.77 12.36 16 29 H 0.13 4.70 5.90 -2.91 -0.02 4.69 16 30 H 0.15 3.69 8.06 -2.91 -0.02 3.66 16 31 H 0.14 3.99 8.06 -2.91 -0.02 3.97 16 32 H 0.26 4.49 8.06 -2.91 -0.02 4.47 16 Total: -1.00 -59.83 260.29 4.48 -55.35 By element: Atomic # 1 Polarization: 21.58 SS G_CDS: 0.43 Total: 22.01 kcal Atomic # 6 Polarization: -35.25 SS G_CDS: 5.07 Total: -30.18 kcal Atomic # 7 Polarization: -87.01 SS G_CDS: -3.04 Total: -90.05 kcal Atomic # 14 Polarization: 40.84 SS G_CDS: 2.03 Total: 42.87 kcal Total: -59.83 4.48 -55.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260016313.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.784 kcal (2) G-P(sol) polarization free energy of solvation -59.833 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.485 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds