Wall clock time and date at job start Mon Mar 30 2020 03:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38258 * 120.00221 * 2 1 4 4 C 1.38211 * 120.00213 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00002 * 0.02562 * 4 3 2 6 6 C 1.38210 * 119.99811 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.00015 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.46805 * 89.99943 * 7 6 5 9 9 C 1.53001 * 109.47008 * 184.66195 * 8 7 6 10 10 C 1.50697 * 115.55026 * 295.82412 * 9 8 7 11 11 H 1.08009 * 119.99778 * 95.21496 * 10 9 8 12 12 C 1.37873 * 120.00291 * 275.21479 * 10 9 8 13 13 N 1.31518 * 119.99397 * 7.12824 * 12 10 9 14 14 Si 1.86797 * 120.00301 * 187.13154 * 12 10 9 15 15 H 1.48501 * 109.46866 * 269.99860 * 14 12 10 16 16 H 1.48501 * 109.47192 * 29.99671 * 14 12 10 17 17 H 1.48498 * 109.47401 * 150.00036 * 14 12 10 18 18 C 1.53008 * 117.49580 * 81.49118 * 9 8 7 19 19 C 1.53002 * 117.49916 * 150.14970 * 9 8 7 20 20 C 1.38217 * 120.00161 * 180.27962 * 2 1 3 21 21 H 1.09003 * 109.46830 * 89.99761 * 1 2 3 22 22 H 1.09002 * 109.46835 * 209.99860 * 1 2 3 23 23 H 1.09001 * 109.47028 * 329.99855 * 1 2 3 24 24 H 1.08009 * 119.99559 * 0.02562 * 3 2 1 25 25 H 1.07997 * 119.99910 * 180.02562 * 4 3 2 26 26 H 1.07994 * 119.99959 * 179.97438 * 5 4 3 27 27 H 1.09005 * 109.46857 * 330.00234 * 7 6 5 28 28 H 1.08995 * 109.47288 * 210.00094 * 7 6 5 29 29 H 1.08992 * 109.46704 * 64.66597 * 8 7 6 30 30 H 1.08994 * 109.46965 * 304.66251 * 8 7 6 31 31 H 0.96998 * 120.00171 * 355.40897 * 13 12 10 32 32 H 1.08998 * 117.49542 * 214.99902 * 18 9 8 33 33 H 1.08996 * 117.49990 * 0.02562 * 18 9 8 34 34 H 1.08994 * 117.49873 * 359.97438 * 19 9 8 35 35 H 1.09001 * 117.49410 * 144.97484 * 19 9 8 36 36 H 1.07999 * 119.99592 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0011 8 6 4.5885 -2.9447 1.4412 9 6 5.4528 -4.2072 1.4424 10 6 4.8242 -5.4257 0.8168 11 1 5.0235 -5.6654 -0.2173 12 6 3.9949 -6.2344 1.5645 13 7 3.6399 -5.8700 2.7773 14 14 3.3757 -7.8477 0.8551 15 1 2.0942 -7.6151 0.1417 16 1 4.3803 -8.3885 -0.0954 17 1 3.1601 -8.8218 1.9550 18 6 6.9637 -4.0292 1.2794 19 6 6.3815 -4.4265 2.6383 20 6 2.1981 -1.1970 -0.0058 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6583 2.1327 0.0004 25 1 4.1204 2.1326 0.0010 26 1 5.3517 0.0000 0.0005 27 1 5.2868 -2.3714 -0.5145 28 1 3.7453 -3.2614 -0.5157 29 1 3.6372 -3.1552 1.9298 30 1 5.1054 -2.1501 1.9793 31 1 4.0137 -5.0662 3.1712 32 1 7.5030 -4.7934 0.7199 33 1 7.3420 -3.0126 1.1719 34 1 6.3772 -3.6712 3.4240 35 1 6.5376 -5.4521 2.9729 36 1 1.6581 -2.1322 -0.0108 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260025423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:20 Heat of formation + Delta-G solvation = 16.966487 kcal Electronic energy + Delta-G solvation = -15505.573756 eV Core-core repulsion = 13147.019050 eV Total energy + Delta-G solvation = -2358.554706 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.20367 -37.04219 -33.50442 -31.92822 -31.78282 -28.75336 -26.70235 -24.91087 -23.59425 -21.70743 -21.22632 -19.91692 -19.14429 -16.39416 -16.19452 -15.20211 -14.62231 -14.14923 -13.72442 -13.63404 -13.25305 -13.08605 -12.73043 -12.33954 -12.27570 -12.00599 -11.90732 -11.10268 -11.05114 -10.85674 -10.76832 -10.44126 -10.31856 -10.10693 -10.03270 -9.41876 -8.51858 -8.44938 -8.39282 -8.28857 -8.04421 -6.30493 -4.03358 1.62763 1.68323 3.43201 3.47378 3.62656 4.03027 4.53180 5.02396 5.04368 5.13793 5.24561 5.37482 5.39967 5.53453 5.66572 5.74056 5.82821 5.92000 6.02471 6.08119 6.17361 6.29218 6.33983 6.42543 6.58666 6.64021 6.66773 6.72730 6.79876 6.83697 6.94869 7.12474 7.17667 7.32619 7.35239 7.54906 8.34046 8.46528 8.93485 9.71689 11.09378 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.025807 B = 0.007064 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.702246 B = 3963.049987 C = 4697.329223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.088 4.088 3 C -0.138 4.138 4 C -0.119 4.119 5 C -0.129 4.129 6 C -0.060 4.060 7 C -0.068 4.068 8 C -0.067 4.067 9 C 0.026 3.974 10 C -0.571 4.571 11 H 0.051 0.949 12 C 0.027 3.973 13 N -0.907 5.907 14 Si 1.066 2.934 15 H -0.288 1.288 16 H -0.289 1.289 17 H -0.285 1.285 18 C -0.200 4.200 19 C -0.185 4.185 20 C -0.117 4.117 21 H 0.067 0.933 22 H 0.066 0.934 23 H 0.062 0.938 24 H 0.114 0.886 25 H 0.115 0.885 26 H 0.117 0.883 27 H 0.061 0.939 28 H 0.079 0.921 29 H 0.059 0.941 30 H 0.030 0.970 31 H 0.276 0.724 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.080 0.920 36 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.448 11.182 -4.964 12.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.088 4.088 3 C -0.156 4.156 4 C -0.137 4.137 5 C -0.147 4.147 6 C -0.060 4.060 7 C -0.106 4.106 8 C -0.105 4.105 9 C 0.026 3.974 10 C -0.609 4.609 11 H 0.069 0.931 12 C -0.179 4.179 13 N -0.542 5.542 14 Si 0.895 3.105 15 H -0.215 1.215 16 H -0.215 1.215 17 H -0.211 1.211 18 C -0.237 4.237 19 C -0.223 4.223 20 C -0.135 4.135 21 H 0.085 0.915 22 H 0.085 0.915 23 H 0.081 0.919 24 H 0.132 0.868 25 H 0.133 0.867 26 H 0.135 0.865 27 H 0.080 0.920 28 H 0.098 0.902 29 H 0.078 0.922 30 H 0.049 0.951 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.443 9.878 -4.638 11.443 hybrid contribution 1.166 1.371 -0.219 1.813 sum -2.277 11.249 -4.858 12.463 Atomic orbital electron populations 1.20773 0.91584 1.02586 1.01993 1.19895 0.95818 0.93257 0.99863 1.20885 0.94234 0.97101 1.03407 1.21038 0.94266 0.97677 1.00700 1.21047 0.99694 0.92092 1.01868 1.20287 0.93855 0.95927 0.95968 1.20499 0.98948 0.92097 0.99008 1.21116 1.00056 0.95477 0.93819 1.19178 0.86697 0.94718 0.96857 1.21283 1.32616 1.08403 0.98580 0.93059 1.25715 0.94369 1.02216 0.95600 1.70685 1.40369 1.27289 1.15843 0.83592 0.75986 0.75643 0.75303 1.21518 1.21525 1.21065 1.22868 1.00360 0.99181 1.01281 1.22781 1.08501 1.00260 0.90730 1.21050 0.93917 0.97570 1.00975 0.91473 0.91455 0.91922 0.86783 0.86655 0.86493 0.92024 0.90210 0.92206 0.95100 0.91270 0.90459 0.91702 0.91781 0.90120 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.29 10.01 36.01 0.36 -0.93 16 2 C -0.09 -1.28 5.88 -104.62 -0.62 -1.90 16 3 C -0.14 -1.87 9.70 -39.58 -0.38 -2.25 16 4 C -0.12 -1.64 10.05 -39.58 -0.40 -2.03 16 5 C -0.13 -2.02 9.70 -39.58 -0.38 -2.40 16 6 C -0.06 -1.06 5.13 -104.62 -0.54 -1.60 16 7 C -0.07 -1.34 5.14 -27.88 -0.14 -1.49 16 8 C -0.07 -1.48 4.98 -26.73 -0.13 -1.62 16 9 C 0.03 0.64 0.91 -155.66 -0.14 0.49 16 10 C -0.57 -15.60 8.26 -34.44 -0.28 -15.88 16 11 H 0.05 1.42 7.82 -52.48 -0.41 1.01 16 12 C 0.03 0.74 5.39 -17.82 -0.10 0.65 16 13 N -0.91 -26.70 13.57 55.43 0.75 -25.95 16 14 Si 1.07 24.89 29.91 -169.99 -5.08 19.81 16 15 H -0.29 -6.51 7.11 56.52 0.40 -6.11 16 16 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 17 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 18 C -0.20 -4.41 9.96 -26.69 -0.27 -4.68 16 19 C -0.19 -4.38 8.73 -26.69 -0.23 -4.61 16 20 C -0.12 -1.96 9.36 -39.58 -0.37 -2.34 16 21 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.07 0.77 8.09 -51.93 -0.42 0.35 16 23 H 0.06 0.62 8.09 -51.93 -0.42 0.20 16 24 H 0.11 1.25 8.06 -52.48 -0.42 0.82 16 25 H 0.12 1.28 8.06 -52.49 -0.42 0.86 16 26 H 0.12 1.68 8.06 -52.49 -0.42 1.26 16 27 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 28 H 0.08 1.68 7.77 -51.93 -0.40 1.28 16 29 H 0.06 1.46 7.85 -51.93 -0.41 1.05 16 30 H 0.03 0.64 8.10 -51.93 -0.42 0.22 16 31 H 0.28 8.10 6.22 -40.82 -0.25 7.84 16 32 H 0.08 1.71 8.14 -51.93 -0.42 1.28 16 33 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.06 1.41 8.14 -51.93 -0.42 0.99 16 35 H 0.08 2.03 8.14 -51.93 -0.42 1.61 16 36 H 0.12 2.07 8.06 -52.49 -0.42 1.64 16 LS Contribution 302.96 15.07 4.57 4.57 Total: -1.00 -29.16 302.96 -9.15 -38.31 By element: Atomic # 1 Polarization: 9.60 SS G_CDS: -5.76 Total: 3.85 kcal Atomic # 6 Polarization: -36.95 SS G_CDS: -3.62 Total: -40.57 kcal Atomic # 7 Polarization: -26.70 SS G_CDS: 0.75 Total: -25.95 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.08 Total: 19.81 kcal Total LS contribution 4.57 Total: 4.57 kcal Total: -29.16 -9.15 -38.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260025423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.273 kcal (2) G-P(sol) polarization free energy of solvation -29.159 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.307 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.966 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds