Wall clock time and date at job start Mon Mar 30 2020 03:32:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38258 * 120.00221 * 2 1 4 4 C 1.38211 * 120.00213 * 179.97438 * 3 2 1 5 5 C 1.38260 * 120.00002 * 0.02562 * 4 3 2 6 6 C 1.38210 * 119.99811 * 0.02562 * 5 4 3 7 7 C 1.50704 * 120.00015 * 179.97438 * 6 5 4 8 8 C 1.53003 * 109.46805 * 89.99943 * 7 6 5 9 9 C 1.53001 * 109.47008 * 184.66195 * 8 7 6 10 10 C 1.50697 * 115.55026 * 295.82412 * 9 8 7 11 11 H 1.08009 * 119.99778 * 95.21496 * 10 9 8 12 12 C 1.37873 * 120.00291 * 275.21479 * 10 9 8 13 13 N 1.31518 * 119.99397 * 7.12824 * 12 10 9 14 14 Si 1.86797 * 120.00301 * 187.13154 * 12 10 9 15 15 H 1.48501 * 109.46866 * 269.99860 * 14 12 10 16 16 H 1.48501 * 109.47192 * 29.99671 * 14 12 10 17 17 H 1.48498 * 109.47401 * 150.00036 * 14 12 10 18 18 C 1.53008 * 117.49580 * 81.49118 * 9 8 7 19 19 C 1.53002 * 117.49916 * 150.14970 * 9 8 7 20 20 C 1.38217 * 120.00161 * 180.27962 * 2 1 3 21 21 H 1.09003 * 109.46830 * 89.99761 * 1 2 3 22 22 H 1.09002 * 109.46835 * 209.99860 * 1 2 3 23 23 H 1.09001 * 109.47028 * 329.99855 * 1 2 3 24 24 H 1.08009 * 119.99559 * 0.02562 * 3 2 1 25 25 H 1.07997 * 119.99910 * 180.02562 * 4 3 2 26 26 H 1.07994 * 119.99959 * 179.97438 * 5 4 3 27 27 H 1.09005 * 109.46857 * 330.00234 * 7 6 5 28 28 H 1.08995 * 109.47288 * 210.00094 * 7 6 5 29 29 H 1.08992 * 109.46704 * 64.66597 * 8 7 6 30 30 H 1.08994 * 109.46965 * 304.66251 * 8 7 6 31 31 H 0.96998 * 120.00171 * 355.40897 * 13 12 10 32 32 H 1.08998 * 117.49542 * 214.99902 * 18 9 8 33 33 H 1.08996 * 117.49990 * 0.02562 * 18 9 8 34 34 H 1.08994 * 117.49873 * 359.97438 * 19 9 8 35 35 H 1.09001 * 117.49410 * 144.97484 * 19 9 8 36 36 H 1.07999 * 119.99592 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.2717 0.0000 0.0005 6 6 3.5807 -1.1970 -0.0005 7 6 4.3341 -2.5021 -0.0011 8 6 4.5885 -2.9447 1.4412 9 6 5.4528 -4.2072 1.4424 10 6 4.8242 -5.4257 0.8168 11 1 5.0235 -5.6654 -0.2173 12 6 3.9949 -6.2344 1.5645 13 7 3.6399 -5.8700 2.7773 14 14 3.3757 -7.8477 0.8551 15 1 2.0942 -7.6151 0.1417 16 1 4.3803 -8.3885 -0.0954 17 1 3.1601 -8.8218 1.9550 18 6 6.9637 -4.0292 1.2794 19 6 6.3815 -4.4265 2.6383 20 6 2.1981 -1.1970 -0.0058 21 1 -0.3633 0.0000 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5139 24 1 1.6583 2.1327 0.0004 25 1 4.1204 2.1326 0.0010 26 1 5.3517 0.0000 0.0005 27 1 5.2868 -2.3714 -0.5145 28 1 3.7453 -3.2614 -0.5157 29 1 3.6372 -3.1552 1.9298 30 1 5.1054 -2.1501 1.9793 31 1 4.0137 -5.0662 3.1712 32 1 7.5030 -4.7934 0.7199 33 1 7.3420 -3.0126 1.1719 34 1 6.3772 -3.6712 3.4240 35 1 6.5376 -5.4521 2.9729 36 1 1.6581 -2.1322 -0.0108 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260025423.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:20 Heat of formation + Delta-G solvation = 4.126937 kcal Electronic energy + Delta-G solvation = -15506.130520 eV Core-core repulsion = 13147.019050 eV Total energy + Delta-G solvation = -2359.111470 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -40.41663 -38.87337 -34.86997 -33.91212 -33.05386 -30.20658 -27.75174 -27.00554 -25.17640 -23.09661 -22.82940 -21.34786 -20.99694 -18.41244 -17.32585 -16.48393 -16.04650 -15.77355 -15.63140 -14.91494 -14.73696 -14.56851 -14.17357 -13.87758 -13.75311 -13.45666 -13.03520 -12.75352 -12.66113 -12.50298 -12.19835 -12.07876 -11.95292 -11.85812 -11.64671 -11.24427 -10.46121 -10.36420 -10.17522 -9.65241 -9.41181 -8.52071 -6.24600 0.47335 0.50263 1.52345 1.60540 1.77649 2.57904 2.85421 3.25537 3.29395 3.83950 3.94162 4.07783 4.23569 4.27414 4.33544 4.38017 4.49619 4.54768 4.66260 4.77930 4.80400 4.81457 4.83472 4.89482 4.94952 5.04246 5.16061 5.20343 5.33843 5.40302 5.47697 5.58310 5.64828 5.72464 5.84234 6.16553 6.19228 6.31670 6.75017 7.56880 8.88328 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.025807 B = 0.007064 C = 0.005959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1084.702246 B = 3963.049987 C = 4697.329223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.093 4.093 3 C -0.135 4.135 4 C -0.114 4.114 5 C -0.138 4.138 6 C -0.084 4.084 7 C -0.055 4.055 8 C -0.053 4.053 9 C -0.005 4.005 10 C -0.578 4.578 11 H 0.041 0.959 12 C -0.021 4.021 13 N -0.933 5.933 14 Si 1.108 2.892 15 H -0.276 1.276 16 H -0.274 1.274 17 H -0.285 1.285 18 C -0.175 4.175 19 C -0.190 4.190 20 C -0.143 4.143 21 H 0.081 0.919 22 H 0.059 0.941 23 H 0.084 0.916 24 H 0.148 0.852 25 H 0.149 0.851 26 H 0.128 0.872 27 H 0.068 0.932 28 H 0.052 0.948 29 H 0.025 0.975 30 H 0.043 0.957 31 H 0.265 0.735 32 H 0.076 0.924 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.057 0.943 36 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.406 13.316 -5.792 14.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.132 4.132 5 C -0.156 4.156 6 C -0.084 4.084 7 C -0.093 4.093 8 C -0.091 4.091 9 C -0.005 4.005 10 C -0.616 4.616 11 H 0.060 0.940 12 C -0.221 4.221 13 N -0.570 5.570 14 Si 0.931 3.069 15 H -0.202 1.202 16 H -0.199 1.199 17 H -0.211 1.211 18 C -0.212 4.212 19 C -0.227 4.227 20 C -0.161 4.161 21 H 0.099 0.901 22 H 0.078 0.922 23 H 0.103 0.897 24 H 0.166 0.834 25 H 0.167 0.833 26 H 0.146 0.854 27 H 0.087 0.913 28 H 0.071 0.929 29 H 0.044 0.956 30 H 0.062 0.938 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.113 0.887 34 H 0.097 0.903 35 H 0.075 0.925 36 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -3.390 12.024 -5.478 13.641 hybrid contribution 1.164 0.786 0.020 1.405 sum -2.225 12.810 -5.458 14.101 Atomic orbital electron populations 1.20828 0.89577 1.03321 1.03108 1.20238 0.97449 0.92783 0.98847 1.21328 0.94477 0.97889 1.01539 1.21440 0.94660 0.98199 0.98908 1.21224 1.00424 0.92015 1.01950 1.20143 0.94137 0.95557 0.98549 1.20271 0.99165 0.92886 0.96941 1.20909 0.97926 0.94816 0.95414 1.19316 0.88388 0.94877 0.97910 1.21562 1.32378 1.09482 0.98202 0.94037 1.26979 0.94670 1.04992 0.95416 1.70794 1.41779 1.27434 1.16946 0.83046 0.76441 0.72339 0.75072 1.20223 1.19906 1.21092 1.22890 0.98185 1.00740 0.99354 1.22708 1.08891 0.99468 0.91646 1.21088 0.94017 0.98164 1.02806 0.90084 0.92226 0.89702 0.83399 0.83307 0.85377 0.91299 0.92910 0.95582 0.93783 0.92432 0.90582 0.88674 0.90300 0.92472 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.35 10.01 71.24 0.71 -1.64 16 2 C -0.09 -2.56 5.88 -19.86 -0.12 -2.68 16 3 C -0.13 -3.17 9.70 22.27 0.22 -2.96 16 4 C -0.11 -2.76 10.05 22.27 0.22 -2.53 16 5 C -0.14 -4.06 9.70 22.27 0.22 -3.84 16 6 C -0.08 -2.94 5.13 -19.87 -0.10 -3.04 16 7 C -0.06 -2.22 5.14 29.85 0.15 -2.07 16 8 C -0.05 -2.39 4.98 30.60 0.15 -2.24 16 9 C 0.00 -0.23 0.91 -52.93 -0.05 -0.27 16 10 C -0.58 -32.32 8.26 25.60 0.21 -32.11 16 11 H 0.04 2.34 7.82 -2.91 -0.02 2.31 16 12 C -0.02 -1.19 5.39 84.65 0.46 -0.73 16 13 N -0.93 -56.57 13.57 21.45 0.29 -56.28 16 14 Si 1.11 50.79 29.91 68.60 2.05 52.85 16 15 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 16 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 17 H -0.29 -13.02 7.11 99.48 0.71 -12.31 16 18 C -0.17 -7.51 9.96 30.62 0.30 -7.21 16 19 C -0.19 -8.99 8.73 30.62 0.27 -8.73 16 20 C -0.14 -4.86 9.36 22.27 0.21 -4.66 16 21 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 22 H 0.06 1.33 8.09 -2.39 -0.02 1.31 16 23 H 0.08 1.40 8.09 -2.39 -0.02 1.39 16 24 H 0.15 2.49 8.06 -2.91 -0.02 2.46 16 25 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 26 H 0.13 3.38 8.06 -2.91 -0.02 3.36 16 27 H 0.07 2.60 8.09 -2.38 -0.02 2.58 16 28 H 0.05 2.34 7.77 -2.39 -0.02 2.32 16 29 H 0.03 1.32 7.85 -2.39 -0.02 1.30 16 30 H 0.04 1.84 8.10 -2.39 -0.02 1.82 16 31 H 0.27 16.17 6.22 -92.71 -0.58 15.60 16 32 H 0.08 3.27 8.14 -2.39 -0.02 3.26 16 33 H 0.09 3.51 8.14 -2.39 -0.02 3.49 16 34 H 0.08 3.45 8.14 -2.39 -0.02 3.43 16 35 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 36 H 0.10 3.79 8.06 -2.91 -0.02 3.77 16 Total: -1.00 -63.91 302.96 6.41 -57.49 By element: Atomic # 1 Polarization: 19.43 SS G_CDS: 1.22 Total: 20.65 kcal Atomic # 6 Polarization: -77.56 SS G_CDS: 2.86 Total: -74.70 kcal Atomic # 7 Polarization: -56.57 SS G_CDS: 0.29 Total: -56.28 kcal Atomic # 14 Polarization: 50.79 SS G_CDS: 2.05 Total: 52.85 kcal Total: -63.91 6.41 -57.49 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260025423.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.619 kcal (2) G-P(sol) polarization free energy of solvation -63.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.415 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds