Wall clock time and date at job start Mon Mar 30 2020 03:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38146 * 119.88908 * 2 1 4 4 C 1.38219 * 119.93346 * 179.75028 * 3 2 1 5 5 C 1.38144 * 119.93371 * 0.50722 * 4 3 2 6 6 C 1.50696 * 119.89415 * 179.74624 * 5 4 3 7 7 C 1.52997 * 109.47055 * 264.72554 * 6 5 4 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99515 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00176 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99883 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47288 * 59.99994 * 12 10 8 14 14 H 1.48503 * 109.47086 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.46819 * 299.99648 * 12 10 8 16 16 C 1.38457 * 120.21287 * 359.46890 * 5 4 3 17 17 C 1.38254 * 119.85315 * 0.28027 * 16 5 4 18 18 C 1.51362 * 109.75692 * 180.02562 * 17 16 5 19 19 C 1.54348 * 105.16883 * 342.80464 * 18 17 16 20 20 C 1.51366 * 130.39417 * 180.31118 * 16 5 4 21 21 H 1.09002 * 109.46421 * 270.01900 * 1 2 3 22 22 H 1.08999 * 109.47293 * 30.01453 * 1 2 3 23 23 H 1.08999 * 109.46568 * 150.02210 * 1 2 3 24 24 H 1.08002 * 120.03599 * 0.03473 * 3 2 1 25 25 H 1.07997 * 120.02959 * 180.25423 * 4 3 2 26 26 H 1.09001 * 109.47328 * 144.72824 * 6 5 4 27 27 H 1.09004 * 109.47043 * 24.72635 * 6 5 4 28 28 H 1.09001 * 109.46832 * 59.99966 * 7 6 5 29 29 H 1.09000 * 109.47611 * 300.00263 * 7 6 5 30 30 H 0.97004 * 119.99507 * 180.02562 * 11 10 8 31 31 H 1.08998 * 110.30739 * 223.88490 * 18 17 16 32 32 H 1.09000 * 110.30796 * 101.72608 * 18 17 16 33 33 H 1.08999 * 110.82590 * 268.12591 * 19 18 17 34 34 H 1.09001 * 110.99133 * 144.65734 * 19 18 17 35 35 H 1.09000 * 110.30902 * 316.08146 * 20 16 5 36 36 H 1.09002 * 110.30159 * 78.23280 * 20 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1977 0.0000 4 6 3.5776 1.1988 0.0052 5 6 4.2679 0.0022 -0.0002 6 6 5.7749 0.0044 -0.0003 7 6 6.2850 -0.1210 -1.4372 8 6 7.7920 -0.1181 -1.4374 9 1 8.3319 -0.0355 -0.5057 10 6 8.4815 -0.2209 -2.6269 11 7 7.8239 -0.3209 -3.7616 12 14 10.3495 -0.2180 -2.6271 13 1 10.8463 -1.3642 -1.8243 14 1 10.8445 -0.3397 -4.0218 15 1 10.8425 1.0516 -2.0352 16 6 3.5797 -1.1992 0.0003 17 6 2.1971 -1.2003 0.0003 18 6 1.6866 -2.6252 0.0015 19 6 2.8902 -3.4858 -0.4382 20 6 4.0924 -2.6234 0.0015 21 1 -0.3632 0.0003 1.0277 22 1 -0.3634 0.8898 -0.5140 23 1 -0.3632 -0.8902 -0.5135 24 1 1.6542 2.1323 0.0006 25 1 4.1174 2.1342 0.0094 26 1 6.1395 -0.8367 0.5894 27 1 6.1369 0.9365 0.4338 28 1 5.9203 0.7201 -2.0269 29 1 5.9230 -1.0530 -1.8713 30 1 8.3090 -0.3936 -4.5984 31 1 0.8655 -2.7335 -0.7070 32 1 1.3635 -2.9105 1.0027 33 1 2.8902 -3.6286 -1.5188 34 1 2.8929 -4.4460 0.0778 35 1 4.9137 -2.7304 -0.7072 36 1 4.4162 -2.9080 1.0026 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260062652.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:00 Heat of formation + Delta-G solvation = -11.613277 kcal Electronic energy + Delta-G solvation = -15572.295472 eV Core-core repulsion = 13212.501455 eV Total energy + Delta-G solvation = -2359.794017 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.92661 -35.53679 -34.51379 -32.63807 -30.21825 -28.57727 -27.65386 -26.48734 -24.01838 -21.75205 -20.91354 -20.58910 -18.90220 -16.33927 -15.73540 -15.38674 -14.64949 -14.42882 -14.13734 -13.45637 -13.06584 -12.80391 -12.69495 -12.48370 -12.15911 -11.91422 -11.82474 -11.35400 -11.16694 -10.93211 -10.89026 -10.72284 -10.62610 -10.47253 -10.26230 -9.75626 -9.50474 -9.05325 -8.32166 -8.07223 -7.78625 -5.97194 -4.00284 1.81724 1.84011 3.34535 3.38878 3.41325 4.14719 4.47990 4.74231 4.88143 5.20565 5.23552 5.31999 5.38031 5.45529 5.53885 5.64541 5.70244 5.81465 5.91835 5.97677 6.01840 6.10800 6.13186 6.23979 6.35620 6.44041 6.59926 6.64521 6.74622 6.94243 7.00854 7.08283 7.24764 7.52279 7.71660 7.86863 8.03517 8.43889 9.06693 9.63483 11.13733 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.035022 B = 0.006162 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.316408 B = 4542.931320 C = 4964.479116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.096 4.096 3 C -0.122 4.122 4 C -0.119 4.119 5 C -0.050 4.050 6 C -0.079 4.079 7 C 0.032 3.968 8 C -0.522 4.522 9 H 0.055 0.945 10 C 0.058 3.942 11 N -0.895 5.895 12 Si 0.892 3.108 13 H -0.277 1.277 14 H -0.287 1.287 15 H -0.277 1.277 16 C -0.089 4.089 17 C -0.102 4.102 18 C -0.076 4.076 19 C -0.120 4.120 20 C -0.084 4.084 21 H 0.062 0.938 22 H 0.060 0.940 23 H 0.060 0.940 24 H 0.116 0.884 25 H 0.120 0.880 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.016 0.984 29 H 0.017 0.983 30 H 0.261 0.739 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.071 0.929 34 H 0.071 0.929 35 H 0.084 0.916 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.020 -2.473 7.822 15.389 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.096 4.096 3 C -0.140 4.140 4 C -0.137 4.137 5 C -0.050 4.050 6 C -0.116 4.116 7 C -0.005 4.005 8 C -0.560 4.560 9 H 0.073 0.927 10 C -0.144 4.144 11 N -0.534 5.534 12 Si 0.719 3.281 13 H -0.202 1.202 14 H -0.213 1.213 15 H -0.202 1.202 16 C -0.089 4.089 17 C -0.102 4.102 18 C -0.113 4.113 19 C -0.158 4.158 20 C -0.121 4.121 21 H 0.081 0.919 22 H 0.079 0.921 23 H 0.079 0.921 24 H 0.134 0.866 25 H 0.138 0.862 26 H 0.076 0.924 27 H 0.075 0.925 28 H 0.034 0.966 29 H 0.036 0.964 30 H 0.070 0.930 31 H 0.087 0.913 32 H 0.091 0.909 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.103 0.897 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -12.996 -2.496 7.624 15.272 hybrid contribution 1.087 0.167 -0.175 1.114 sum -11.909 -2.328 7.449 14.238 Atomic orbital electron populations 1.20686 0.92064 1.02110 1.01502 1.19244 0.95226 0.92047 1.03119 1.20808 0.94221 0.96714 1.02275 1.20949 0.93781 0.97629 1.01377 1.19893 0.97329 0.91433 0.96339 1.20799 0.88133 1.01041 1.01661 1.19033 0.95205 0.97382 0.88868 1.21230 0.91750 1.50318 0.92704 0.92714 1.25016 0.98339 0.95349 0.95651 1.69972 1.35447 1.50309 0.97657 0.86669 0.85863 0.78602 0.76932 1.20244 1.21298 1.20244 1.20354 0.93525 0.94647 1.00343 1.20337 0.94217 0.94072 1.01612 1.20964 0.98136 0.91042 1.01137 1.22288 0.94252 0.97772 1.01467 1.21038 0.98545 0.90510 1.01982 0.91945 0.92106 0.92058 0.86617 0.86152 0.92373 0.92505 0.96594 0.96425 0.92969 0.91338 0.90912 0.91039 0.91029 0.89724 0.90798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.22 9.87 36.01 0.36 -0.87 16 2 C -0.10 -1.46 5.88 -104.57 -0.62 -2.08 16 3 C -0.12 -1.91 9.69 -39.62 -0.38 -2.30 16 4 C -0.12 -2.13 9.67 -39.62 -0.38 -2.51 16 5 C -0.05 -0.98 5.14 -104.58 -0.54 -1.52 16 6 C -0.08 -1.71 5.10 -27.89 -0.14 -1.85 16 7 C 0.03 0.85 4.95 -27.88 -0.14 0.71 16 8 C -0.52 -14.94 9.11 -34.44 -0.31 -15.25 16 9 H 0.05 1.51 7.74 -52.49 -0.41 1.11 16 10 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 11 N -0.89 -27.27 13.29 55.43 0.74 -26.53 16 12 Si 0.89 21.82 29.54 -169.99 -5.02 16.79 16 13 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 14 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 15 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 16 C -0.09 -1.61 6.00 -104.21 -0.63 -2.23 16 17 C -0.10 -1.64 6.00 -104.21 -0.63 -2.27 16 18 C -0.08 -0.98 6.27 -26.85 -0.17 -1.15 16 19 C -0.12 -1.59 7.08 -25.32 -0.18 -1.77 16 20 C -0.08 -1.36 6.21 -26.85 -0.17 -1.52 16 21 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 22 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 23 H 0.06 0.65 7.29 -51.93 -0.38 0.27 16 24 H 0.12 1.50 8.06 -52.49 -0.42 1.08 16 25 H 0.12 2.00 8.06 -52.49 -0.42 1.58 16 26 H 0.06 1.22 7.83 -51.93 -0.41 0.82 16 27 H 0.06 1.19 8.05 -51.93 -0.42 0.77 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.49 7.68 -51.93 -0.40 0.09 16 30 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 31 H 0.07 0.79 7.62 -51.93 -0.40 0.40 16 32 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 33 H 0.07 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.54 7.68 -51.93 -0.40 1.14 16 36 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 295.84 15.07 4.46 4.46 Total: -1.00 -30.92 295.84 -9.59 -40.50 By element: Atomic # 1 Polarization: 3.54 SS G_CDS: -5.74 Total: -2.20 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: -4.02 Total: -33.02 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.74 Total: -26.53 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.79 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.92 -9.59 -40.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062652.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.891 kcal (2) G-P(sol) polarization free energy of solvation -30.917 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.026 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds