Wall clock time and date at job start Mon Mar 30 2020 03:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38146 * 119.88908 * 2 1 4 4 C 1.38219 * 119.93346 * 179.75028 * 3 2 1 5 5 C 1.38144 * 119.93371 * 0.50722 * 4 3 2 6 6 C 1.50696 * 119.89415 * 179.74624 * 5 4 3 7 7 C 1.52997 * 109.47055 * 264.72554 * 6 5 4 8 8 C 1.50706 * 109.47238 * 179.97438 * 7 6 5 9 9 H 1.07999 * 119.99515 * 0.02562 * 8 7 6 10 10 C 1.37870 * 120.00176 * 180.02562 * 8 7 6 11 11 N 1.31520 * 119.99883 * 0.02562 * 10 8 7 12 12 Si 1.86800 * 120.00043 * 180.02562 * 10 8 7 13 13 H 1.48494 * 109.47288 * 59.99994 * 12 10 8 14 14 H 1.48503 * 109.47086 * 179.97438 * 12 10 8 15 15 H 1.48505 * 109.46819 * 299.99648 * 12 10 8 16 16 C 1.38457 * 120.21287 * 359.46890 * 5 4 3 17 17 C 1.38254 * 119.85315 * 0.28027 * 16 5 4 18 18 C 1.51362 * 109.75692 * 180.02562 * 17 16 5 19 19 C 1.54348 * 105.16883 * 342.80464 * 18 17 16 20 20 C 1.51366 * 130.39417 * 180.31118 * 16 5 4 21 21 H 1.09002 * 109.46421 * 270.01900 * 1 2 3 22 22 H 1.08999 * 109.47293 * 30.01453 * 1 2 3 23 23 H 1.08999 * 109.46568 * 150.02210 * 1 2 3 24 24 H 1.08002 * 120.03599 * 0.03473 * 3 2 1 25 25 H 1.07997 * 120.02959 * 180.25423 * 4 3 2 26 26 H 1.09001 * 109.47328 * 144.72824 * 6 5 4 27 27 H 1.09004 * 109.47043 * 24.72635 * 6 5 4 28 28 H 1.09001 * 109.46832 * 59.99966 * 7 6 5 29 29 H 1.09000 * 109.47611 * 300.00263 * 7 6 5 30 30 H 0.97004 * 119.99507 * 180.02562 * 11 10 8 31 31 H 1.08998 * 110.30739 * 223.88490 * 18 17 16 32 32 H 1.09000 * 110.30796 * 101.72608 * 18 17 16 33 33 H 1.08999 * 110.82590 * 268.12591 * 19 18 17 34 34 H 1.09001 * 110.99133 * 144.65734 * 19 18 17 35 35 H 1.09000 * 110.30902 * 316.08146 * 20 16 5 36 36 H 1.09002 * 110.30159 * 78.23280 * 20 16 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1955 1.1977 0.0000 4 6 3.5776 1.1988 0.0052 5 6 4.2679 0.0022 -0.0002 6 6 5.7749 0.0044 -0.0003 7 6 6.2850 -0.1210 -1.4372 8 6 7.7920 -0.1181 -1.4374 9 1 8.3319 -0.0355 -0.5057 10 6 8.4815 -0.2209 -2.6269 11 7 7.8239 -0.3209 -3.7616 12 14 10.3495 -0.2180 -2.6271 13 1 10.8463 -1.3642 -1.8243 14 1 10.8445 -0.3397 -4.0218 15 1 10.8425 1.0516 -2.0352 16 6 3.5797 -1.1992 0.0003 17 6 2.1971 -1.2003 0.0003 18 6 1.6866 -2.6252 0.0015 19 6 2.8902 -3.4858 -0.4382 20 6 4.0924 -2.6234 0.0015 21 1 -0.3632 0.0003 1.0277 22 1 -0.3634 0.8898 -0.5140 23 1 -0.3632 -0.8902 -0.5135 24 1 1.6542 2.1323 0.0006 25 1 4.1174 2.1342 0.0094 26 1 6.1395 -0.8367 0.5894 27 1 6.1369 0.9365 0.4338 28 1 5.9203 0.7201 -2.0269 29 1 5.9230 -1.0530 -1.8713 30 1 8.3090 -0.3936 -4.5984 31 1 0.8655 -2.7335 -0.7070 32 1 1.3635 -2.9105 1.0027 33 1 2.8902 -3.6286 -1.5188 34 1 2.8929 -4.4460 0.0778 35 1 4.9137 -2.7304 -0.7072 36 1 4.4162 -2.9080 1.0026 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260062652.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:00 Heat of formation + Delta-G solvation = -26.819603 kcal Electronic energy + Delta-G solvation = -15572.954868 eV Core-core repulsion = 13212.501455 eV Total energy + Delta-G solvation = -2360.453413 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.18551 -36.82189 -36.15589 -34.52772 -31.91151 -29.83199 -28.81207 -28.11488 -25.72741 -23.20475 -22.48713 -21.89275 -20.23622 -18.53703 -17.03789 -16.60572 -16.53754 -15.84805 -15.43479 -14.73987 -14.55879 -14.36349 -14.08254 -13.90582 -13.63165 -13.27749 -13.07458 -12.83921 -12.77915 -12.61778 -12.37524 -12.10185 -11.92052 -11.83505 -11.70730 -11.60502 -11.43766 -11.07845 -10.57351 -9.33565 -9.16379 -8.21135 -6.34189 0.51800 0.52374 1.38261 1.42030 1.50060 2.39448 2.84137 3.10949 3.58441 3.71976 4.08670 4.11177 4.18193 4.25463 4.37533 4.41999 4.57920 4.74671 4.78674 4.83429 4.88284 4.90336 4.93072 5.02747 5.05193 5.12107 5.16109 5.31028 5.34433 5.44530 5.49694 5.58020 5.65823 5.76810 5.81896 5.93810 6.19679 6.24781 6.82064 7.35262 8.90245 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.035022 B = 0.006162 C = 0.005639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.316408 B = 4542.931320 C = 4964.479116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.095 4.095 3 C -0.125 4.125 4 C -0.136 4.136 5 C -0.087 4.087 6 C -0.062 4.062 7 C 0.043 3.957 8 C -0.546 4.546 9 H 0.061 0.939 10 C 0.000 4.000 11 N -0.934 5.934 12 Si 0.968 3.032 13 H -0.265 1.265 14 H -0.282 1.282 15 H -0.266 1.266 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.070 4.070 19 C -0.115 4.115 20 C -0.088 4.088 21 H 0.081 0.919 22 H 0.073 0.927 23 H 0.073 0.927 24 H 0.145 0.855 25 H 0.121 0.879 26 H 0.057 0.943 27 H 0.057 0.943 28 H -0.017 1.017 29 H -0.011 1.011 30 H 0.264 0.736 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.063 0.937 34 H 0.101 0.899 35 H 0.049 0.951 36 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.389 -2.940 8.850 17.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.095 4.095 3 C -0.143 4.143 4 C -0.154 4.154 5 C -0.087 4.087 6 C -0.100 4.100 7 C 0.006 3.994 8 C -0.584 4.584 9 H 0.079 0.921 10 C -0.197 4.197 11 N -0.574 5.574 12 Si 0.792 3.208 13 H -0.190 1.190 14 H -0.207 1.207 15 H -0.191 1.191 16 C -0.114 4.114 17 C -0.110 4.110 18 C -0.106 4.106 19 C -0.152 4.152 20 C -0.125 4.125 21 H 0.099 0.901 22 H 0.092 0.908 23 H 0.092 0.908 24 H 0.163 0.837 25 H 0.139 0.861 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.002 0.998 29 H 0.007 0.993 30 H 0.073 0.927 31 H 0.106 0.894 32 H 0.114 0.886 33 H 0.082 0.918 34 H 0.119 0.881 35 H 0.068 0.932 36 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -14.373 -2.962 8.668 17.044 hybrid contribution 1.438 0.331 -0.501 1.558 sum -12.935 -2.631 8.167 15.522 Atomic orbital electron populations 1.20759 0.88834 1.03421 1.03058 1.19779 0.97593 0.91376 1.00780 1.21166 0.93307 0.98513 1.01296 1.21110 0.95212 0.97065 1.01971 1.19834 0.95907 0.93180 0.99737 1.20491 0.90421 1.00917 0.98161 1.18827 0.94684 0.94375 0.91480 1.21663 0.92914 1.50512 0.93278 0.92061 1.26015 1.04157 0.94517 0.95045 1.70120 1.37800 1.51044 0.98430 0.85466 0.78790 0.79278 0.77314 1.19002 1.20688 1.19066 1.20679 0.95097 0.94797 1.00815 1.20821 0.93326 0.96243 1.00585 1.21030 0.98122 0.88488 1.02993 1.22311 0.92873 0.98654 1.01353 1.21094 0.98931 0.90690 1.01740 0.90073 0.90794 0.90846 0.83710 0.86086 0.92431 0.92394 0.99842 0.99289 0.92727 0.89357 0.88561 0.91824 0.88087 0.93213 0.89706 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.97 9.87 71.24 0.70 -1.26 16 2 C -0.10 -2.67 5.88 -19.83 -0.12 -2.79 16 3 C -0.13 -3.75 9.69 22.24 0.22 -3.54 16 4 C -0.14 -4.93 9.67 22.24 0.22 -4.71 16 5 C -0.09 -3.54 5.14 -19.84 -0.10 -3.64 16 6 C -0.06 -2.86 5.10 29.85 0.15 -2.71 16 7 C 0.04 2.45 4.95 29.85 0.15 2.60 16 8 C -0.55 -32.36 9.11 25.60 0.23 -32.13 16 9 H 0.06 3.46 7.74 -2.91 -0.02 3.44 16 10 C 0.00 0.02 5.46 84.65 0.46 0.49 16 11 N -0.93 -58.74 13.29 21.45 0.28 -58.45 16 12 Si 0.97 45.23 29.54 68.60 2.03 47.25 16 13 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 14 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 16 C -0.11 -4.20 6.00 -19.60 -0.12 -4.32 16 17 C -0.11 -3.35 6.00 -19.60 -0.12 -3.47 16 18 C -0.07 -1.58 6.27 30.52 0.19 -1.39 16 19 C -0.11 -2.85 7.08 31.51 0.22 -2.63 16 20 C -0.09 -2.89 6.21 30.52 0.19 -2.71 16 21 H 0.08 1.28 8.14 -2.39 -0.02 1.27 16 22 H 0.07 1.23 8.08 -2.39 -0.02 1.21 16 23 H 0.07 1.23 7.29 -2.39 -0.02 1.22 16 24 H 0.15 3.39 8.06 -2.91 -0.02 3.37 16 25 H 0.12 4.19 8.06 -2.91 -0.02 4.17 16 26 H 0.06 2.56 7.83 -2.39 -0.02 2.54 16 27 H 0.06 2.55 8.05 -2.38 -0.02 2.54 16 28 H -0.02 -1.04 8.14 -2.39 -0.02 -1.06 16 29 H -0.01 -0.69 7.68 -2.39 -0.02 -0.71 16 30 H 0.26 15.54 8.31 -92.71 -0.77 14.77 16 31 H 0.09 1.70 7.62 -2.39 -0.02 1.68 16 32 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 33 H 0.06 1.66 8.14 -2.39 -0.02 1.65 16 34 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 35 H 0.05 1.95 7.68 -2.39 -0.02 1.93 16 36 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -69.30 295.84 5.63 -63.68 By element: Atomic # 1 Polarization: 8.71 SS G_CDS: 1.03 Total: 9.74 kcal Atomic # 6 Polarization: -64.50 SS G_CDS: 2.28 Total: -62.22 kcal Atomic # 7 Polarization: -58.74 SS G_CDS: 0.28 Total: -58.45 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.25 kcal Total: -69.30 5.63 -63.68 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260062652.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.857 kcal (2) G-P(sol) polarization free energy of solvation -69.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.445 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds