Wall clock time and date at job start Mon Mar 30 2020 02:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47397 * 2 1 4 4 C 1.50704 * 109.47246 * 239.99754 * 2 1 3 5 5 H 1.08006 * 120.00128 * 240.10769 * 4 2 1 6 6 C 1.37873 * 119.99683 * 60.10047 * 4 2 1 7 7 N 1.31511 * 120.00173 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99906 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47326 * 60.00342 * 8 6 4 10 10 H 1.48498 * 109.47339 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47334 * 300.00400 * 8 6 4 12 12 C 1.50705 * 109.47424 * 119.99937 * 2 1 3 13 13 C 1.38969 * 119.58788 * 356.71403 * 12 2 1 14 14 C 1.36468 * 120.62510 * 179.73999 * 13 12 2 15 15 C 1.39945 * 119.63844 * 0.54721 * 14 13 12 16 16 C 1.45932 * 134.03784 * 179.70648 * 15 14 13 17 17 N 1.30239 * 107.78511 * 180.02562 * 16 15 14 18 18 N 1.39870 * 110.08740 * 359.97438 * 17 16 15 19 19 H 0.97001 * 125.46459 * 180.02562 * 18 17 16 20 20 C 1.37040 * 109.07596 * 0.02562 * 18 17 16 21 21 C 1.36585 * 119.59554 * 176.98794 * 12 2 1 22 22 H 1.08995 * 109.46915 * 60.00129 * 1 2 3 23 23 H 1.09005 * 109.46486 * 300.00044 * 1 2 3 24 24 H 1.09000 * 109.46725 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47008 * 59.99952 * 3 2 1 26 26 H 1.08998 * 109.47025 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46945 * 299.99842 * 3 2 1 28 28 H 0.97005 * 119.99881 * 180.02562 * 7 6 4 29 29 H 1.07998 * 119.68657 * 0.02562 * 13 12 2 30 30 H 1.07999 * 120.18436 * 180.23134 * 14 13 12 31 31 H 1.07996 * 126.10424 * 0.02562 * 16 15 14 32 32 H 1.07999 * 120.07528 * 359.94815 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6519 -1.5896 -1.1313 6 6 1.7010 -0.2382 -2.4827 7 7 0.9470 0.8325 -2.6034 8 14 2.3231 -1.1192 -4.0079 9 1 1.8255 -2.5184 -4.0089 10 1 1.8307 -0.4174 -5.2204 11 1 3.8081 -1.1221 -4.0069 12 6 2.0324 -0.7104 1.2305 13 6 1.1237 -1.1750 2.1737 14 6 1.5551 -1.8257 3.2930 15 6 2.9263 -2.0164 3.4975 16 6 3.7172 -2.6441 4.5511 17 7 4.9732 -2.5340 4.2249 18 7 5.0952 -1.8648 3.0027 19 1 5.9304 -1.6630 2.5525 20 6 3.8457 -1.5401 2.5432 21 6 3.3755 -0.8847 1.4076 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 0.5139 0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.6768 1.9563 0.8899 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 0.7135 1.1645 -3.4844 29 1 0.0659 -1.0236 2.0172 30 1 0.8424 -2.1871 4.0196 31 1 3.3300 -3.1158 5.4422 32 1 4.0713 -0.5156 0.6687 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260074036.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:26 Heat of formation + Delta-G solvation = 76.730185 kcal Electronic energy + Delta-G solvation = -15686.621359 eV Core-core repulsion = 13227.117859 eV Total energy + Delta-G solvation = -2459.503501 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.75220 -37.69577 -34.54297 -31.94287 -31.30430 -29.04564 -28.13760 -25.76986 -25.18324 -22.45089 -21.72646 -21.20083 -19.09305 -17.08537 -16.32132 -15.54578 -15.02332 -14.36330 -14.24054 -14.10561 -13.30219 -13.11280 -12.87216 -11.99262 -11.53902 -11.27416 -11.15442 -10.90754 -10.82727 -10.70315 -10.55710 -10.34316 -10.14762 -9.85897 -9.63355 -9.39823 -8.90833 -8.38066 -7.76712 -7.46832 -6.01839 -4.12035 1.53400 2.14285 2.93234 3.08950 3.28194 3.33181 3.36559 4.34929 4.50652 4.97588 5.05825 5.24494 5.37585 5.72946 5.82519 6.07024 6.22142 6.45827 6.52506 6.69154 6.81076 6.88127 6.90864 6.98931 7.11858 7.27445 7.39302 7.46438 7.62539 7.69421 7.77037 7.95019 8.03457 8.15228 8.39232 8.87783 9.53134 10.99101 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034386 B = 0.007812 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.083650 B = 3583.593331 C = 3988.874663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.093 3.907 3 C -0.126 4.126 4 C -0.501 4.501 5 H 0.056 0.944 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.891 3.109 9 H -0.277 1.277 10 H -0.287 1.287 11 H -0.278 1.278 12 C 0.021 3.979 13 C -0.156 4.156 14 C -0.056 4.056 15 C -0.204 4.204 16 C 0.071 3.929 17 N -0.271 5.271 18 N -0.519 5.519 19 H 0.435 0.565 20 C 0.130 3.870 21 C -0.144 4.144 22 H 0.086 0.914 23 H 0.014 0.986 24 H 0.030 0.970 25 H 0.010 0.990 26 H 0.027 0.973 27 H 0.088 0.912 28 H 0.261 0.739 29 H 0.128 0.872 30 H 0.118 0.882 31 H 0.189 0.811 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.870 -2.848 8.909 9.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.093 3.907 3 C -0.184 4.184 4 C -0.539 4.539 5 H 0.075 0.925 6 C -0.135 4.135 7 N -0.524 5.524 8 Si 0.719 3.281 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.204 1.204 12 C 0.019 3.981 13 C -0.175 4.175 14 C -0.077 4.077 15 C -0.212 4.212 16 C -0.127 4.127 17 N -0.084 5.084 18 N -0.234 5.234 19 H 0.278 0.722 20 C 0.015 3.985 21 C -0.166 4.166 22 H 0.104 0.896 23 H 0.033 0.967 24 H 0.049 0.951 25 H 0.029 0.971 26 H 0.046 0.954 27 H 0.106 0.894 28 H 0.071 0.929 29 H 0.146 0.854 30 H 0.136 0.864 31 H 0.205 0.795 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges 3.004 -2.994 9.115 10.054 hybrid contribution 0.027 -0.272 -1.353 1.380 sum 3.031 -3.266 7.763 8.951 Atomic orbital electron populations 1.21905 0.97395 0.99263 1.00530 1.17320 0.92785 0.92047 0.88569 1.21816 0.98470 0.97578 1.00546 1.21037 1.31523 1.11856 0.89535 0.92532 1.24893 0.94931 0.94930 0.98746 1.69796 1.36655 1.22595 1.23355 0.86667 0.79173 0.79859 0.82368 1.20305 1.21260 1.20381 1.20245 0.91538 0.91424 0.94932 1.20934 1.00572 1.01513 0.94523 1.20238 0.92417 0.97674 0.97351 1.19778 0.94506 1.09671 0.97218 1.24918 0.89514 0.99342 0.98921 1.76389 1.20362 1.13692 0.97994 1.45822 1.06473 1.52811 1.18318 0.72185 1.18962 0.85411 0.98005 0.96075 1.19734 0.96572 1.04518 0.95732 0.89572 0.96728 0.95094 0.97059 0.95376 0.89366 0.92891 0.85412 0.86448 0.79451 0.85701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.02 6.91 37.16 0.26 -2.77 16 2 C 0.09 2.17 0.57 -156.81 -0.09 2.08 16 3 C -0.13 -2.92 8.08 37.16 0.30 -2.62 16 4 C -0.50 -12.95 7.57 -34.44 -0.26 -13.21 16 5 H 0.06 1.49 7.50 -52.48 -0.39 1.09 16 6 C 0.07 1.72 5.15 -17.82 -0.09 1.63 16 7 N -0.89 -23.45 9.35 55.43 0.52 -22.93 16 8 Si 0.89 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 10 H -0.29 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 12 C 0.02 0.45 4.71 -104.95 -0.49 -0.04 16 13 C -0.16 -2.91 8.90 -39.95 -0.36 -3.27 16 14 C -0.06 -0.92 10.07 -39.58 -0.40 -1.32 16 15 C -0.20 -3.49 6.37 -105.21 -0.67 -4.16 16 16 C 0.07 1.04 12.28 -15.15 -0.19 0.85 16 17 N -0.27 -4.32 12.55 31.87 0.40 -3.92 16 18 N -0.52 -8.38 7.37 32.36 0.24 -8.14 16 19 H 0.43 5.78 8.96 -182.77 -1.64 4.14 16 20 C 0.13 2.38 7.34 -84.17 -0.62 1.76 16 21 C -0.14 -2.87 8.56 -39.79 -0.34 -3.21 16 22 H 0.09 2.15 6.08 -51.93 -0.32 1.83 16 23 H 0.01 0.28 7.33 -51.93 -0.38 -0.10 16 24 H 0.03 0.67 7.65 -51.93 -0.40 0.28 16 25 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 26 H 0.03 0.62 7.52 -51.93 -0.39 0.23 16 27 H 0.09 2.21 6.06 -51.93 -0.31 1.90 16 28 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 29 H 0.13 2.25 5.83 -52.49 -0.31 1.94 16 30 H 0.12 1.52 8.06 -52.49 -0.42 1.09 16 31 H 0.19 1.91 8.06 -52.49 -0.42 1.48 16 32 H 0.13 2.51 7.60 -52.49 -0.40 2.11 16 LS Contribution 263.72 15.07 3.97 3.97 Total: -1.00 -28.03 263.72 -7.78 -35.80 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -4.94 Total: 3.93 kcal Atomic # 6 Polarization: -21.32 SS G_CDS: -2.95 Total: -24.27 kcal Atomic # 7 Polarization: -36.15 SS G_CDS: 1.16 Total: -34.99 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.97 Total: 3.97 kcal Total: -28.03 -7.78 -35.80 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074036.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.534 kcal (2) G-P(sol) polarization free energy of solvation -28.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.804 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds