Wall clock time and date at job start Mon Mar 30 2020 02:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47397 * 2 1 4 4 C 1.50704 * 109.47246 * 239.99754 * 2 1 3 5 5 H 1.08006 * 120.00128 * 240.10769 * 4 2 1 6 6 C 1.37873 * 119.99683 * 60.10047 * 4 2 1 7 7 N 1.31511 * 120.00173 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99906 * 180.02562 * 6 4 2 9 9 H 1.48503 * 109.47326 * 60.00342 * 8 6 4 10 10 H 1.48498 * 109.47339 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47334 * 300.00400 * 8 6 4 12 12 C 1.50705 * 109.47424 * 119.99937 * 2 1 3 13 13 C 1.38969 * 119.58788 * 356.71403 * 12 2 1 14 14 C 1.36468 * 120.62510 * 179.73999 * 13 12 2 15 15 C 1.39945 * 119.63844 * 0.54721 * 14 13 12 16 16 C 1.45932 * 134.03784 * 179.70648 * 15 14 13 17 17 N 1.30239 * 107.78511 * 180.02562 * 16 15 14 18 18 N 1.39870 * 110.08740 * 359.97438 * 17 16 15 19 19 H 0.97001 * 125.46459 * 180.02562 * 18 17 16 20 20 C 1.37040 * 109.07596 * 0.02562 * 18 17 16 21 21 C 1.36585 * 119.59554 * 176.98794 * 12 2 1 22 22 H 1.08995 * 109.46915 * 60.00129 * 1 2 3 23 23 H 1.09005 * 109.46486 * 300.00044 * 1 2 3 24 24 H 1.09000 * 109.46725 * 180.02562 * 1 2 3 25 25 H 1.08992 * 109.47008 * 59.99952 * 3 2 1 26 26 H 1.08998 * 109.47025 * 180.02562 * 3 2 1 27 27 H 1.09005 * 109.46945 * 299.99842 * 3 2 1 28 28 H 0.97005 * 119.99881 * 180.02562 * 7 6 4 29 29 H 1.07998 * 119.68657 * 0.02562 * 13 12 2 30 30 H 1.07999 * 120.18436 * 180.23134 * 14 13 12 31 31 H 1.07996 * 126.10424 * 0.02562 * 16 15 14 32 32 H 1.07999 * 120.07528 * 359.94815 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2305 5 1 2.6519 -1.5896 -1.1313 6 6 1.7010 -0.2382 -2.4827 7 7 0.9470 0.8325 -2.6034 8 14 2.3231 -1.1192 -4.0079 9 1 1.8255 -2.5184 -4.0089 10 1 1.8307 -0.4174 -5.2204 11 1 3.8081 -1.1221 -4.0069 12 6 2.0324 -0.7104 1.2305 13 6 1.1237 -1.1750 2.1737 14 6 1.5551 -1.8257 3.2930 15 6 2.9263 -2.0164 3.4975 16 6 3.7172 -2.6441 4.5511 17 7 4.9732 -2.5340 4.2249 18 7 5.0952 -1.8648 3.0027 19 1 5.9304 -1.6630 2.5525 20 6 3.8457 -1.5401 2.5432 21 6 3.3755 -0.8847 1.4076 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3632 0.5139 0.8901 24 1 -0.3633 -1.0277 0.0005 25 1 1.6768 1.9563 0.8899 26 1 3.1301 1.4424 -0.0005 27 1 1.6768 1.9563 -0.8900 28 1 0.7135 1.1645 -3.4844 29 1 0.0659 -1.0236 2.0172 30 1 0.8424 -2.1871 4.0196 31 1 3.3300 -3.1158 5.4422 32 1 4.0713 -0.5156 0.6687 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260074036.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:55:26 Heat of formation + Delta-G solvation = 61.246977 kcal Electronic energy + Delta-G solvation = -15687.292761 eV Core-core repulsion = 13227.117859 eV Total energy + Delta-G solvation = -2460.174903 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.05756 -39.22732 -36.19815 -33.39553 -33.00930 -30.41025 -29.62343 -27.54809 -27.16281 -23.93408 -23.15735 -22.41224 -20.75375 -18.45302 -18.09732 -17.08224 -16.82588 -15.73585 -15.65786 -15.48872 -14.82068 -14.61545 -14.46127 -13.67709 -13.30256 -13.01644 -12.91864 -12.68610 -12.43782 -12.35989 -12.18326 -12.01877 -11.72000 -11.44228 -11.14778 -11.10835 -10.77037 -10.35226 -9.23219 -8.81191 -7.99395 -6.14990 0.20074 0.74059 1.42208 1.43969 1.50157 1.69041 1.87352 2.45438 3.04994 3.24064 3.79041 3.88243 4.04480 4.25693 4.57610 4.65103 4.82427 4.88010 4.94936 5.01979 5.14815 5.22647 5.32149 5.41684 5.58607 5.62540 5.63719 5.72491 5.91346 6.10375 6.19603 6.33263 6.45805 6.47725 6.72753 6.89245 7.51799 8.98954 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.034386 B = 0.007812 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 814.083650 B = 3583.593331 C = 3988.874663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.086 3.914 3 C -0.118 4.118 4 C -0.514 4.514 5 H 0.043 0.957 6 C 0.027 3.973 7 N -0.902 5.902 8 Si 0.941 3.059 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.278 1.278 12 C 0.000 4.000 13 C -0.175 4.175 14 C -0.036 4.036 15 C -0.215 4.215 16 C 0.088 3.912 17 N -0.283 5.283 18 N -0.520 5.520 19 H 0.443 0.557 20 C 0.116 3.884 21 C -0.159 4.159 22 H 0.059 0.941 23 H 0.035 0.965 24 H 0.030 0.970 25 H 0.024 0.976 26 H 0.022 0.978 27 H 0.064 0.936 28 H 0.260 0.740 29 H 0.136 0.864 30 H 0.161 0.839 31 H 0.237 0.763 32 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.693 -4.105 10.942 11.809 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.086 3.914 3 C -0.175 4.175 4 C -0.552 4.552 5 H 0.061 0.939 6 C -0.173 4.173 7 N -0.541 5.541 8 Si 0.768 3.232 9 H -0.203 1.203 10 H -0.209 1.209 11 H -0.204 1.204 12 C -0.002 4.002 13 C -0.194 4.194 14 C -0.056 4.056 15 C -0.223 4.223 16 C -0.109 4.109 17 N -0.097 5.097 18 N -0.236 5.236 19 H 0.288 0.712 20 C 0.001 3.999 21 C -0.181 4.181 22 H 0.078 0.922 23 H 0.054 0.946 24 H 0.049 0.951 25 H 0.043 0.957 26 H 0.041 0.959 27 H 0.083 0.917 28 H 0.069 0.931 29 H 0.153 0.847 30 H 0.179 0.821 31 H 0.253 0.747 32 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 2.849 -4.249 11.145 12.263 hybrid contribution 0.124 0.084 -1.887 1.893 sum 2.973 -4.165 9.258 10.578 Atomic orbital electron populations 1.21750 0.97015 0.99072 1.00216 1.17291 0.93100 0.91946 0.89079 1.21678 0.98058 0.97840 0.99954 1.21258 1.31292 1.11602 0.91022 0.93883 1.25467 0.95307 0.95608 1.00874 1.69914 1.37268 1.23320 1.23580 0.85886 0.78576 0.78866 0.79889 1.20304 1.20852 1.20357 1.20091 0.92393 0.92812 0.94932 1.21020 1.00523 1.02712 0.95151 1.20619 0.92927 0.95238 0.96809 1.20203 0.94863 1.09575 0.97624 1.25678 0.88302 0.97661 0.99280 1.76415 1.21372 1.14098 0.97782 1.45917 1.06330 1.52786 1.18566 0.71234 1.19004 0.86832 0.98070 0.95988 1.19584 0.96203 1.05804 0.96499 0.92182 0.94564 0.95127 0.95653 0.95859 0.91701 0.93057 0.84665 0.82113 0.74705 0.87350 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.58 6.91 71.98 0.50 -5.08 16 2 C 0.09 4.07 0.57 -53.67 -0.03 4.04 16 3 C -0.12 -5.53 8.08 71.98 0.58 -4.95 16 4 C -0.51 -27.11 7.57 25.60 0.19 -26.91 16 5 H 0.04 2.33 7.50 -2.91 -0.02 2.31 16 6 C 0.03 1.42 5.15 84.65 0.44 1.85 16 7 N -0.90 -48.72 9.35 21.45 0.20 -48.52 16 8 Si 0.94 42.73 29.54 68.60 2.03 44.76 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 11 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 12 C 0.00 0.02 4.71 -20.07 -0.09 -0.08 16 13 C -0.17 -6.19 8.90 22.03 0.20 -5.99 16 14 C -0.04 -1.05 10.07 22.27 0.22 -0.82 16 15 C -0.21 -6.67 6.37 -20.24 -0.13 -6.80 16 16 C 0.09 2.21 12.28 86.92 1.07 3.27 16 17 N -0.28 -8.23 12.55 -53.09 -0.67 -8.89 16 18 N -0.52 -16.06 7.37 -51.53 -0.38 -16.44 16 19 H 0.44 11.51 8.96 -213.47 -1.91 9.59 16 20 C 0.12 4.12 7.34 39.21 0.29 4.41 16 21 C -0.16 -6.41 8.56 22.14 0.19 -6.22 16 22 H 0.06 3.03 6.08 -2.39 -0.01 3.02 16 23 H 0.04 1.43 7.33 -2.38 -0.02 1.42 16 24 H 0.03 1.33 7.65 -2.39 -0.02 1.31 16 25 H 0.02 1.06 8.14 -2.39 -0.02 1.05 16 26 H 0.02 1.05 7.52 -2.39 -0.02 1.04 16 27 H 0.06 3.34 6.06 -2.38 -0.01 3.33 16 28 H 0.26 13.55 8.31 -92.70 -0.77 12.78 16 29 H 0.14 4.48 5.83 -2.91 -0.02 4.46 16 30 H 0.16 3.25 8.06 -2.91 -0.02 3.22 16 31 H 0.24 3.33 8.06 -2.91 -0.02 3.30 16 32 H 0.11 4.57 7.60 -2.91 -0.02 4.55 16 Total: -1.00 -60.32 263.72 3.83 -56.49 By element: Atomic # 1 Polarization: 16.65 SS G_CDS: -0.77 Total: 15.88 kcal Atomic # 6 Polarization: -46.70 SS G_CDS: 3.42 Total: -43.28 kcal Atomic # 7 Polarization: -73.00 SS G_CDS: -0.85 Total: -73.85 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.76 kcal Total: -60.32 3.83 -56.49 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260074036.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.737 kcal (2) G-P(sol) polarization free energy of solvation -60.316 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.420 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds