Wall clock time and date at job start Mon Mar 30 2020 03:07:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36164 * 125.74506 * 2 1 4 4 C 1.35970 * 109.05054 * 180.02562 * 3 2 1 5 5 C 1.39297 * 108.09496 * 0.02562 * 4 3 2 6 6 C 1.50693 * 126.47684 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.47162 * 265.02384 * 6 5 4 8 8 C 1.40889 * 126.29495 * 269.97545 * 7 6 5 9 9 C 1.34846 * 107.41694 * 180.02562 * 8 7 6 10 10 N 1.36333 * 108.22069 * 359.97438 * 9 8 7 11 11 H 0.97005 * 125.63769 * 180.02562 * 10 9 8 12 12 C 1.34853 * 126.28965 * 89.99783 * 7 6 5 13 13 C 1.38023 * 125.74086 * 180.34380 * 2 1 3 14 14 C 1.39953 * 126.35928 * 359.97438 * 13 2 1 15 15 H 1.07996 * 120.00456 * 219.91136 * 14 13 2 16 16 C 1.40074 * 119.99298 * 39.91557 * 14 13 2 17 17 N 1.30860 * 120.00139 * 18.49121 * 16 14 13 18 18 Si 1.86805 * 119.99487 * 198.49349 * 16 14 13 19 19 H 1.48495 * 109.47343 * 59.99771 * 18 16 14 20 20 H 1.48500 * 109.46872 * 179.97438 * 18 16 14 21 21 H 1.48502 * 109.46774 * 299.99885 * 18 16 14 22 22 H 1.09006 * 109.47042 * 88.32980 * 1 2 3 23 23 H 1.08993 * 109.47240 * 208.32966 * 1 2 3 24 24 H 1.08998 * 109.47098 * 328.33657 * 1 2 3 25 25 H 1.07996 * 125.47491 * 0.02770 * 3 2 1 26 26 H 1.08003 * 125.95445 * 180.02562 * 4 3 2 27 27 H 1.09005 * 109.47065 * 145.02428 * 6 5 4 28 28 H 1.08999 * 109.47273 * 25.02382 * 6 5 4 29 29 H 1.08000 * 126.28722 * 359.97438 * 8 7 6 30 30 H 1.08003 * 125.88454 * 180.02562 * 9 8 7 31 31 H 1.08005 * 125.88590 * 359.72307 * 12 7 6 32 32 H 0.97006 * 119.99541 * 174.90067 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2604 1.1051 0.0000 4 6 3.5628 0.7145 -0.0006 5 6 3.5969 -0.6780 -0.0015 6 6 4.8301 -1.5440 -0.0030 7 6 5.1694 -1.9326 -1.4189 8 6 4.7076 -3.0738 -2.1041 9 6 5.2449 -3.0472 -3.3406 10 7 6.0212 -1.9312 -3.4441 11 1 6.5257 -1.6645 -4.2286 12 6 5.9714 -1.2521 -2.2630 13 6 2.2712 -1.1203 -0.0067 14 6 1.8411 -2.4520 -0.0142 15 1 2.3579 -3.1899 0.5814 16 6 0.7401 -2.8279 -0.7944 17 7 0.3390 -2.0584 -1.7739 18 14 -0.1555 -4.4277 -0.4365 19 1 -0.6911 -4.3961 0.9482 20 1 -1.2763 -4.5929 -1.3966 21 1 0.7885 -5.5654 -0.5763 22 1 -0.3633 0.0300 -1.0273 23 1 -0.3633 -0.9045 0.4876 24 1 -0.3633 0.8747 0.5394 25 1 1.9127 2.1276 0.0004 26 1 4.4214 1.3698 -0.0003 27 1 4.6439 -2.4424 0.5857 28 1 5.6629 -0.9910 0.4315 29 1 4.0455 -3.8310 -1.7108 30 1 5.0869 -3.7828 -4.1154 31 1 6.4821 -0.3263 -2.0428 32 1 -0.3754 -2.3526 -2.3604 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260076321.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:07:26 Heat of formation + Delta-G solvation = 84.418168 kcal Electronic energy + Delta-G solvation = -15830.327638 eV Core-core repulsion = 13371.157513 eV Total energy + Delta-G solvation = -2459.170125 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -40.14849 -38.98175 -33.25779 -32.70467 -30.30552 -28.63836 -28.28340 -26.20472 -24.26338 -23.16980 -19.96374 -19.04415 -18.70324 -17.97184 -17.15427 -16.19368 -15.01763 -14.44744 -13.53863 -13.26607 -12.90337 -12.83957 -12.71529 -12.17560 -11.91566 -11.58317 -11.46231 -11.28390 -11.03101 -10.82933 -10.59984 -10.47219 -10.16387 -10.15982 -9.56506 -8.77211 -7.71215 -7.22013 -6.79558 -6.53456 -6.29089 -4.04697 3.08657 3.11552 3.17453 3.21862 3.95215 4.03185 4.11031 4.13665 4.55176 4.79445 5.34438 5.84245 5.95554 6.09026 6.32682 6.51934 6.53184 6.56285 6.76799 6.86768 7.00689 7.05774 7.22068 7.24335 7.35414 7.44908 7.77688 7.92169 8.03272 8.06414 8.31832 8.39637 8.50461 8.90354 9.09056 9.33019 9.54131 10.51251 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.020642 B = 0.011794 C = 0.008546 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.109528 B = 2373.618679 C = 3275.536783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.109 3.891 2 N -0.448 5.448 3 C -0.120 4.120 4 C -0.171 4.171 5 C -0.280 4.280 6 C 0.054 3.946 7 C -0.118 4.118 8 C -0.167 4.167 9 C -0.042 4.042 10 N -0.572 5.572 11 H 0.402 0.598 12 C -0.040 4.040 13 C 0.254 3.746 14 C -0.465 4.465 15 H 0.083 0.917 16 C 0.079 3.921 17 N -0.824 5.824 18 Si 0.894 3.106 19 H -0.269 1.269 20 H -0.284 1.284 21 H -0.267 1.267 22 H 0.066 0.934 23 H 0.066 0.934 24 H 0.039 0.961 25 H 0.122 0.878 26 H 0.098 0.902 27 H 0.054 0.946 28 H 0.042 0.958 29 H 0.132 0.868 30 H 0.150 0.850 31 H 0.150 0.850 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.409 -0.180 -1.612 4.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.034 4.034 2 N -0.127 5.127 3 C -0.245 4.245 4 C -0.197 4.197 5 C -0.285 4.285 6 C 0.015 3.985 7 C -0.125 4.125 8 C -0.193 4.193 9 C -0.171 4.171 10 N -0.168 5.168 11 H 0.237 0.763 12 C -0.168 4.168 13 C 0.141 3.859 14 C -0.501 4.501 15 H 0.101 0.899 16 C -0.135 4.135 17 N -0.454 5.454 18 Si 0.720 3.280 19 H -0.194 1.194 20 H -0.209 1.209 21 H -0.191 1.191 22 H 0.084 0.916 23 H 0.084 0.916 24 H 0.057 0.943 25 H 0.139 0.861 26 H 0.116 0.884 27 H 0.072 0.928 28 H 0.060 0.940 29 H 0.150 0.850 30 H 0.167 0.833 31 H 0.168 0.832 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.930 -0.024 -1.853 4.345 hybrid contribution -0.557 -0.455 -0.625 0.953 sum 3.372 -0.479 -2.478 4.212 Atomic orbital electron populations 1.21550 0.80026 1.00011 1.01829 1.44125 1.04446 1.06092 1.58012 1.20993 0.90767 0.90035 1.22735 1.20038 0.93914 0.94829 1.10876 1.19167 0.92361 0.92135 1.24806 1.17847 0.93690 0.96842 0.90093 1.19733 0.99153 0.95804 0.97814 1.20852 1.03561 1.00812 0.94027 1.21616 1.02234 0.93373 0.99900 1.41754 1.40801 1.20976 1.13234 0.76342 1.21452 1.08513 1.00248 0.86630 1.17654 0.86799 0.86250 0.95166 1.18315 1.12403 0.92533 1.26867 0.89860 1.25678 0.96171 0.97638 0.94011 1.69827 1.25952 1.37087 1.12533 0.86591 0.79397 0.83137 0.78851 1.19420 1.20918 1.19138 0.91578 0.91560 0.94275 0.86069 0.88370 0.92764 0.93965 0.85045 0.83279 0.83234 0.91615 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.47 9.25 59.85 0.55 3.02 16 2 N -0.45 -11.55 3.13 -121.45 -0.38 -11.93 16 3 C -0.12 -2.93 11.42 -16.44 -0.19 -3.11 16 4 C -0.17 -4.17 10.74 -40.00 -0.43 -4.60 16 5 C -0.28 -7.16 5.48 -103.67 -0.57 -7.73 16 6 C 0.05 1.21 5.99 -29.04 -0.17 1.03 16 7 C -0.12 -2.56 5.37 -104.82 -0.56 -3.13 16 8 C -0.17 -3.59 10.81 -39.78 -0.43 -4.02 16 9 C -0.04 -0.76 11.94 -16.75 -0.20 -0.96 16 10 N -0.57 -9.39 6.07 -12.85 -0.08 -9.46 16 11 H 0.40 4.94 8.96 -40.82 -0.37 4.58 16 12 C -0.04 -0.75 11.85 -16.75 -0.20 -0.94 16 13 C 0.25 6.90 6.08 -83.87 -0.51 6.39 16 14 C -0.47 -12.46 8.72 -38.25 -0.33 -12.79 16 15 H 0.08 2.19 7.91 -52.49 -0.42 1.78 16 16 C 0.08 2.01 4.13 -17.28 -0.07 1.94 16 17 N -0.82 -21.72 10.73 55.56 0.60 -21.13 16 18 Si 0.89 19.25 29.60 -169.99 -5.03 14.22 16 19 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 20 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.27 -5.70 7.11 56.52 0.40 -5.30 16 22 H 0.07 1.55 7.10 -51.93 -0.37 1.18 16 23 H 0.07 1.53 6.99 -51.93 -0.36 1.16 16 24 H 0.04 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.12 2.60 8.06 -52.49 -0.42 2.18 16 26 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 27 H 0.05 1.22 8.09 -51.93 -0.42 0.80 16 28 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.13 2.93 8.06 -52.49 -0.42 2.50 16 30 H 0.15 2.22 8.06 -52.48 -0.42 1.80 16 31 H 0.15 2.46 8.06 -52.48 -0.42 2.04 16 32 H 0.27 6.75 8.30 -40.82 -0.34 6.41 16 LS Contribution 276.59 15.07 4.17 4.17 Total: -1.00 -30.53 276.59 -7.87 -38.40 By element: Atomic # 1 Polarization: 14.66 SS G_CDS: -4.03 Total: 10.63 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: -3.11 Total: -24.90 kcal Atomic # 7 Polarization: -42.66 SS G_CDS: 0.14 Total: -42.52 kcal Atomic # 14 Polarization: 19.25 SS G_CDS: -5.03 Total: 14.22 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.53 -7.87 -38.40 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260076321.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.816 kcal (2) G-P(sol) polarization free energy of solvation -30.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.398 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.418 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds