Wall clock time and date at job start Mon Mar 30 2020 03:32:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38236 * 120.00139 * 2 1 4 4 C 1.38236 * 120.00372 * 180.27605 * 3 2 1 5 5 C 1.50696 * 120.00425 * 179.72152 * 4 3 2 6 6 C 1.50699 * 115.55046 * 234.29892 * 5 4 3 7 7 H 1.07999 * 120.00151 * 263.10910 * 6 5 4 8 8 C 1.37874 * 119.99908 * 83.11292 * 6 5 4 9 9 N 1.31515 * 120.00167 * 353.24847 * 8 6 5 10 10 Si 1.86803 * 120.00161 * 173.25013 * 8 6 5 11 11 H 1.48503 * 109.46740 * 359.97438 * 10 8 6 12 12 H 1.48493 * 109.47528 * 119.99642 * 10 8 6 13 13 H 1.48503 * 109.47247 * 240.00188 * 10 8 6 14 14 C 1.53006 * 117.49991 * 88.62496 * 5 4 3 15 15 C 1.53005 * 117.49817 * 19.96650 * 5 4 3 16 16 C 1.38237 * 119.99488 * 359.73898 * 4 3 2 17 17 C 1.38226 * 120.00414 * 0.02562 * 16 4 3 18 18 C 1.50703 * 120.00138 * 179.97438 * 17 16 4 19 19 C 1.38238 * 120.00227 * 179.76047 * 2 1 3 20 20 C 1.50700 * 119.99813 * 0.02562 * 19 2 1 21 21 H 1.08996 * 109.47177 * 270.23658 * 1 2 3 22 22 H 1.08994 * 109.47210 * 30.23773 * 1 2 3 23 23 H 1.08997 * 109.46809 * 150.23732 * 1 2 3 24 24 H 1.08006 * 120.00176 * 359.97438 * 3 2 1 25 25 H 0.96999 * 120.00153 * 174.98565 * 9 8 6 26 26 H 1.08997 * 117.49847 * 0.02562 * 14 5 4 27 27 H 1.08998 * 117.49728 * 145.02667 * 14 5 4 28 28 H 1.09001 * 117.50042 * 214.98068 * 15 5 4 29 29 H 1.08997 * 117.49831 * 0.02562 * 15 5 4 30 30 H 1.08001 * 119.99615 * 179.97438 * 16 4 3 31 31 H 1.09004 * 109.46907 * 270.02424 * 18 17 16 32 32 H 1.08995 * 109.46819 * 30.02858 * 18 17 16 33 33 H 1.09001 * 109.47063 * 150.02491 * 18 17 16 34 34 H 1.08996 * 109.46776 * 269.72598 * 20 19 2 35 35 H 1.08997 * 109.47074 * 29.72022 * 20 19 2 36 36 H 1.09001 * 109.46889 * 149.72806 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5806 1.1972 -0.0058 5 6 4.3341 2.5022 -0.0121 6 6 5.3415 2.6657 -1.1208 7 1 6.3842 2.4505 -0.9391 8 6 4.9323 3.0901 -2.3671 9 7 3.6502 3.2247 -2.6278 10 14 6.1987 3.4740 -3.6856 11 1 7.5622 3.2447 -3.1439 12 1 5.9763 2.5901 -4.8580 13 1 6.0645 4.8928 -4.1028 14 6 4.6648 3.1337 1.3418 15 6 3.5845 3.7530 0.4514 16 6 4.2717 0.0000 -0.0061 17 6 3.5806 -1.1971 -0.0012 18 6 4.3341 -2.5022 -0.0021 19 6 2.1982 -1.1971 0.0050 20 6 1.4447 -2.5022 0.0099 21 1 -0.3633 0.0042 1.0276 22 1 -0.3633 0.8878 -0.5175 23 1 -0.3633 -0.8921 -0.5101 24 1 1.6582 2.1325 -0.0004 25 1 3.3643 3.5920 -3.4788 26 1 4.3377 2.6049 2.2370 27 1 5.6109 3.6677 1.4304 28 1 3.8204 4.6942 -0.0453 29 1 2.5466 3.6318 0.7613 30 1 5.3517 0.0000 -0.0110 31 1 4.5119 -2.8184 -1.0300 32 1 5.2884 -2.3711 0.5080 33 1 3.7470 -3.2611 0.5151 34 1 1.2670 -2.8152 1.0387 35 1 0.4904 -2.3727 -0.5005 36 1 2.0319 -3.2627 -0.5050 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260168674.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:32:22 Heat of formation + Delta-G solvation = 14.704828 kcal Electronic energy + Delta-G solvation = -15996.901299 eV Core-core repulsion = 13638.248520 eV Total energy + Delta-G solvation = -2358.652778 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.67763 -38.10301 -34.31260 -34.07914 -33.31018 -29.22141 -28.02292 -27.19846 -26.69095 -23.10642 -22.71071 -21.29654 -20.26691 -18.09850 -16.85593 -16.59603 -16.48505 -15.50628 -15.24100 -14.91294 -14.42860 -13.93822 -13.64854 -13.58276 -13.52584 -13.34672 -13.20040 -13.00953 -12.88232 -12.53992 -12.27770 -12.22926 -12.06551 -11.92282 -11.55245 -11.26522 -10.90771 -10.45873 -10.11902 -9.19516 -8.87480 -8.10145 -6.23935 0.72161 0.77503 1.37211 1.39742 1.50292 2.40584 3.00865 3.18218 3.54803 4.05737 4.10511 4.18343 4.35658 4.45058 4.52089 4.67282 4.69703 4.71779 4.78463 4.79750 4.87306 4.92412 4.97870 5.01214 5.12264 5.15444 5.20099 5.22807 5.39820 5.53855 5.60483 5.64154 5.71414 5.94886 5.99204 6.15227 6.43494 6.48717 6.81397 7.43801 8.96371 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.024703 B = 0.008792 C = 0.008196 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1133.199511 B = 3183.981991 C = 3415.606638 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.100 4.100 3 C -0.137 4.137 4 C -0.018 4.018 5 C 0.046 3.954 6 C -0.507 4.507 7 H 0.052 0.948 8 C 0.028 3.972 9 N -0.896 5.896 10 Si 0.947 3.053 11 H -0.267 1.267 12 H -0.284 1.284 13 H -0.278 1.278 14 C -0.182 4.182 15 C -0.161 4.161 16 C -0.136 4.136 17 C -0.099 4.099 18 C -0.104 4.104 19 C -0.122 4.122 20 C -0.104 4.104 21 H 0.080 0.920 22 H 0.054 0.946 23 H 0.085 0.915 24 H 0.099 0.901 25 H 0.258 0.742 26 H 0.084 0.916 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.074 0.926 30 H 0.103 0.897 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.075 0.925 36 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.304 -9.712 5.273 11.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.100 4.100 3 C -0.155 4.155 4 C -0.019 4.019 5 C 0.046 3.954 6 C -0.545 4.545 7 H 0.070 0.930 8 C -0.173 4.173 9 N -0.533 5.533 10 Si 0.772 3.228 11 H -0.191 1.191 12 H -0.210 1.210 13 H -0.204 1.204 14 C -0.219 4.219 15 C -0.198 4.198 16 C -0.154 4.154 17 C -0.099 4.099 18 C -0.160 4.160 19 C -0.122 4.122 20 C -0.160 4.160 21 H 0.099 0.901 22 H 0.073 0.927 23 H 0.103 0.897 24 H 0.117 0.883 25 H 0.067 0.933 26 H 0.102 0.898 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.092 0.908 30 H 0.121 0.879 31 H 0.088 0.912 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -4.435 -9.723 5.108 11.845 hybrid contribution 0.781 1.071 -1.003 1.663 sum -3.654 -8.652 4.105 10.249 Atomic orbital electron populations 1.20804 0.89671 1.02920 1.02777 1.20036 0.97193 0.92328 1.00475 1.20881 0.93960 0.97313 1.03323 1.19676 0.93202 0.94833 0.94153 1.17811 0.97003 0.88242 0.92375 1.20657 0.92710 1.46359 0.94733 0.92973 1.25651 0.96725 0.95244 0.99677 1.70166 1.15159 1.44005 1.23993 0.85683 0.79995 0.77796 0.79277 1.19089 1.21037 1.20382 1.23010 0.99443 1.05237 0.94214 1.22483 0.94921 0.98505 1.03930 1.20812 0.99191 0.92084 1.03361 1.20042 0.93910 0.95525 1.00433 1.20773 0.99648 0.93133 1.02460 1.19811 0.92999 0.95798 1.03598 1.20816 0.99774 0.92573 1.02864 0.90124 0.92694 0.89658 0.88314 0.93311 0.89776 0.89823 0.92019 0.90781 0.87870 0.91203 0.91645 0.89475 0.90228 0.90652 0.90790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.99 9.60 71.24 0.68 -2.30 16 2 C -0.10 -3.76 5.88 -19.86 -0.12 -3.88 16 3 C -0.14 -6.19 8.96 22.27 0.20 -5.99 16 4 C -0.02 -0.89 5.25 -19.87 -0.10 -0.99 16 5 C 0.05 2.36 1.58 -53.67 -0.08 2.28 16 6 C -0.51 -28.47 8.54 25.60 0.22 -28.25 16 7 H 0.05 2.92 7.82 -2.91 -0.02 2.90 16 8 C 0.03 1.58 5.40 84.65 0.46 2.04 16 9 N -0.90 -52.35 13.02 21.45 0.28 -52.07 16 10 Si 0.95 44.28 29.55 68.60 2.03 46.30 16 11 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 12 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 13 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 14 C -0.18 -8.16 9.94 30.62 0.30 -7.86 16 15 C -0.16 -7.83 9.12 30.62 0.28 -7.55 16 16 C -0.14 -6.08 9.11 22.27 0.20 -5.88 16 17 C -0.10 -3.65 5.88 -19.87 -0.12 -3.76 16 18 C -0.10 -2.82 9.20 71.24 0.66 -2.17 16 19 C -0.12 -4.17 5.88 -19.86 -0.12 -4.29 16 20 C -0.10 -2.45 8.79 71.24 0.63 -1.83 16 21 H 0.08 1.96 8.14 -2.39 -0.02 1.94 16 22 H 0.05 1.61 8.09 -2.39 -0.02 1.59 16 23 H 0.08 2.00 5.94 -2.39 -0.01 1.99 16 24 H 0.10 4.62 6.42 -2.91 -0.02 4.60 16 25 H 0.26 14.39 8.32 -92.71 -0.77 13.62 16 26 H 0.08 3.42 8.14 -2.39 -0.02 3.40 16 27 H 0.08 3.62 8.14 -2.39 -0.02 3.60 16 28 H 0.06 3.18 8.14 -2.39 -0.02 3.16 16 29 H 0.07 3.41 6.56 -2.39 -0.02 3.40 16 30 H 0.10 4.65 8.06 -2.91 -0.02 4.62 16 31 H 0.07 1.81 8.14 -2.38 -0.02 1.79 16 32 H 0.06 1.70 8.09 -2.39 -0.02 1.68 16 33 H 0.09 1.88 6.70 -2.39 -0.02 1.86 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.59 5.94 -2.39 -0.01 1.57 16 36 H 0.07 1.55 6.70 -2.39 -0.02 1.53 16 Total: -1.00 -63.65 294.50 6.45 -57.20 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 1.05 Total: 18.99 kcal Atomic # 6 Polarization: -73.51 SS G_CDS: 3.09 Total: -70.42 kcal Atomic # 7 Polarization: -52.35 SS G_CDS: 0.28 Total: -52.07 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.30 kcal Total: -63.65 6.45 -57.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260168674.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.909 kcal (2) G-P(sol) polarization free energy of solvation -63.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds