Wall clock time and date at job start Mon Mar 30 2020 03:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 C 1.38683 * 120.16556 * 60.00077 * 12 2 1 14 14 N 1.31527 * 121.27896 * 179.97438 * 13 12 2 15 15 C 1.33007 * 121.40187 * 359.97438 * 14 13 12 16 16 C 1.46419 * 133.75659 * 179.97438 * 15 14 13 17 17 C 1.34357 * 107.07838 * 180.02562 * 16 15 14 18 18 N 1.36640 * 109.94277 * 359.97438 * 17 16 15 19 19 C 1.46507 * 125.09173 * 179.97438 * 18 17 16 20 20 C 1.37616 * 109.81102 * 0.02562 * 18 17 16 21 21 C 1.38305 * 120.15919 * 239.72072 * 12 2 1 22 22 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 23 23 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 24 24 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.08005 * 119.35792 * 359.97169 * 13 12 2 27 27 H 1.07996 * 126.46169 * 0.02562 * 16 15 14 28 28 H 1.07998 * 125.02985 * 180.02562 * 17 16 15 29 29 H 1.09001 * 109.46791 * 90.02653 * 19 18 17 30 30 H 1.08996 * 109.46843 * 210.02061 * 19 18 17 31 31 H 1.08991 * 109.47191 * 330.02749 * 19 18 17 32 32 H 1.07997 * 120.85984 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 6 2.0323 -0.7104 1.2306 13 6 1.6993 -2.0380 1.4535 14 7 2.1259 -2.6793 2.5197 15 6 2.8937 -2.0820 3.4267 16 6 3.5071 -2.5211 4.6816 17 6 4.1832 -1.4719 5.1787 18 7 4.0539 -0.3969 4.3451 19 6 4.6567 0.9196 4.5688 20 6 3.2717 -0.7358 3.2648 21 6 2.8323 -0.0430 2.1402 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 0.7173 1.1669 -3.4844 26 1 1.0776 -2.5554 0.7378 27 1 3.4305 -3.5032 5.1242 28 1 4.7464 -1.4775 6.1002 29 1 5.6453 0.9491 4.1104 30 1 4.0262 1.6884 4.1223 31 1 4.7472 1.1006 5.6397 32 1 3.1067 0.9897 1.9835 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260184181.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:13 Heat of formation + Delta-G solvation = 63.325994 kcal Electronic energy + Delta-G solvation = -15401.163860 eV Core-core repulsion = 12941.079110 eV Total energy + Delta-G solvation = -2460.084750 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.06689 -37.76460 -34.53760 -32.52613 -31.22344 -30.36725 -27.54964 -26.17661 -25.14201 -22.84058 -22.39359 -20.31060 -19.26885 -17.08892 -16.40351 -15.69185 -15.37119 -15.20675 -14.56160 -13.81827 -13.21422 -13.14639 -12.74058 -12.53230 -12.29733 -12.15838 -11.83624 -11.53556 -11.28716 -10.95307 -10.79552 -10.38998 -10.18595 -9.79952 -9.53608 -8.98233 -8.61243 -8.33794 -7.64282 -7.44260 -6.03618 -4.10774 1.63117 2.07289 3.00644 3.02102 3.30319 3.36981 3.41616 4.40621 4.66152 4.73830 4.81602 5.02980 5.18481 5.27555 5.37276 5.48405 5.65174 5.77737 5.92999 6.20600 6.31669 6.46993 6.79202 6.87471 6.90964 7.06266 7.19770 7.21502 7.50445 7.60455 7.69855 7.88488 8.05835 8.34694 8.77179 8.92051 9.54495 11.01964 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037766 B = 0.006635 C = 0.006434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.234183 B = 4218.963135 C = 4350.656839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.078 3.922 3 H 0.035 0.965 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.064 3.936 7 N -0.890 5.890 8 Si 0.893 3.107 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.274 1.274 12 C -0.058 4.058 13 C 0.104 3.896 14 N -0.460 5.460 15 C 0.062 3.938 16 C -0.190 4.190 17 C 0.047 3.953 18 N -0.490 5.490 19 C 0.082 3.918 20 C 0.050 3.950 21 C -0.108 4.108 22 H 0.009 0.991 23 H 0.087 0.913 24 H 0.031 0.969 25 H 0.261 0.739 26 H 0.158 0.842 27 H 0.146 0.854 28 H 0.167 0.833 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.366 0.078 12.835 13.912 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.059 3.941 3 H 0.053 0.947 4 C -0.548 4.548 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.528 5.528 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.212 1.212 11 H -0.199 1.199 12 C -0.061 4.061 13 C -0.063 4.063 14 N -0.168 5.168 15 C -0.070 4.070 16 C -0.217 4.217 17 C -0.079 4.079 18 N -0.175 5.175 19 C -0.060 4.060 20 C -0.057 4.057 21 C -0.137 4.137 22 H 0.028 0.972 23 H 0.106 0.894 24 H 0.050 0.950 25 H 0.071 0.929 26 H 0.175 0.825 27 H 0.164 0.836 28 H 0.184 0.816 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.097 0.903 32 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 5.242 -0.396 12.961 13.987 hybrid contribution 0.684 0.573 -0.985 1.329 sum 5.926 0.177 11.976 13.363 Atomic orbital electron populations 1.21797 0.97295 0.99592 1.00373 1.17833 0.93001 0.95332 0.87927 0.94651 1.21094 1.31464 1.12454 0.89744 0.92331 1.24939 0.94968 0.94929 0.98948 1.69879 1.36663 1.22766 1.23516 0.86565 0.79412 0.79399 0.82515 1.20491 1.21242 1.19898 1.21396 0.93559 0.95036 0.96118 1.22596 0.98270 0.92016 0.93390 1.67120 1.09616 1.38090 1.02002 1.19950 1.00438 0.90104 0.96485 1.21402 1.05023 0.99329 0.95943 1.21674 1.03034 0.86395 0.96799 1.43579 1.44065 1.10773 1.19109 1.21877 0.98800 0.82853 1.02509 1.19175 0.98356 0.96752 0.91390 1.20401 1.01019 0.99898 0.92412 0.97230 0.89439 0.94962 0.92887 0.82457 0.83631 0.81566 0.91578 0.90197 0.90285 0.85997 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.15 8.79 37.16 0.33 -2.82 16 2 C 0.08 1.92 2.48 -92.92 -0.23 1.69 16 3 H 0.04 0.92 7.91 -51.93 -0.41 0.51 16 4 C -0.51 -13.70 8.24 -34.44 -0.28 -13.98 16 5 H 0.06 1.59 7.61 -52.49 -0.40 1.19 16 6 C 0.06 1.72 5.31 -17.82 -0.09 1.63 16 7 N -0.89 -24.76 11.33 55.43 0.63 -24.13 16 8 Si 0.89 21.07 29.54 -169.99 -5.02 16.05 16 9 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 12 C -0.06 -1.29 4.75 -104.43 -0.50 -1.78 16 13 C 0.10 2.28 9.87 -17.52 -0.17 2.11 16 14 N -0.46 -9.94 10.42 -9.86 -0.10 -10.05 16 15 C 0.06 1.23 7.52 -83.11 -0.62 0.61 16 16 C -0.19 -2.97 11.08 -37.66 -0.42 -3.39 16 17 C 0.05 0.61 11.28 -16.78 -0.19 0.42 16 18 N -0.49 -7.13 3.17 -121.80 -0.39 -7.52 16 19 C 0.08 0.82 11.03 59.85 0.66 1.48 16 20 C 0.05 0.94 6.82 -83.96 -0.57 0.36 16 21 C -0.11 -2.18 9.72 -39.20 -0.38 -2.56 16 22 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 23 H 0.09 2.26 6.08 -51.93 -0.32 1.94 16 24 H 0.03 0.72 7.39 -51.93 -0.38 0.34 16 25 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 26 H 0.16 3.36 7.56 -52.48 -0.40 2.96 16 27 H 0.15 1.94 8.06 -52.49 -0.42 1.51 16 28 H 0.17 1.37 8.06 -52.49 -0.42 0.95 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.08 0.79 8.12 -51.93 -0.42 0.37 16 31 H 0.08 0.56 8.13 -51.93 -0.42 0.13 16 32 H 0.12 2.22 7.99 -52.49 -0.42 1.80 16 LS Contribution 274.14 15.07 4.13 4.13 Total: -1.00 -30.74 274.14 -7.22 -37.96 By element: Atomic # 1 Polarization: 3.78 SS G_CDS: -4.00 Total: -0.22 kcal Atomic # 6 Polarization: -13.76 SS G_CDS: -2.47 Total: -16.23 kcal Atomic # 7 Polarization: -41.83 SS G_CDS: 0.14 Total: -41.69 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.74 -7.22 -37.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184181.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.287 kcal (2) G-P(sol) polarization free energy of solvation -30.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.961 kcal (6) G-S(sol) free energy of system = (1) + (5) 63.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds