Wall clock time and date at job start Mon Mar 30 2020 03:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09000 * 109.47011 * 2 1 4 4 C 1.50701 * 109.47000 * 239.99279 * 2 1 3 5 5 H 1.08002 * 119.99761 * 239.99828 * 4 2 1 6 6 C 1.37871 * 119.99694 * 60.28391 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48504 * 109.47209 * 89.99886 * 8 6 4 10 10 H 1.48501 * 109.47358 * 209.99377 * 8 6 4 11 11 H 1.48496 * 109.47341 * 329.99989 * 8 6 4 12 12 C 1.50703 * 109.46654 * 119.99604 * 2 1 3 13 13 C 1.38683 * 120.16556 * 60.00077 * 12 2 1 14 14 N 1.31527 * 121.27896 * 179.97438 * 13 12 2 15 15 C 1.33007 * 121.40187 * 359.97438 * 14 13 12 16 16 C 1.46419 * 133.75659 * 179.97438 * 15 14 13 17 17 C 1.34357 * 107.07838 * 180.02562 * 16 15 14 18 18 N 1.36640 * 109.94277 * 359.97438 * 17 16 15 19 19 C 1.46507 * 125.09173 * 179.97438 * 18 17 16 20 20 C 1.37616 * 109.81102 * 0.02562 * 18 17 16 21 21 C 1.38305 * 120.15919 * 239.72072 * 12 2 1 22 22 H 1.08996 * 109.47069 * 300.00816 * 1 2 3 23 23 H 1.09004 * 109.46658 * 60.00195 * 1 2 3 24 24 H 1.08995 * 109.47438 * 179.97438 * 1 2 3 25 25 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 26 26 H 1.08005 * 119.35792 * 359.97169 * 13 12 2 27 27 H 1.07996 * 126.46169 * 0.02562 * 16 15 14 28 28 H 1.07998 * 125.02985 * 180.02562 * 17 16 15 29 29 H 1.09001 * 109.46791 * 90.02653 * 19 18 17 30 30 H 1.08996 * 109.46843 * 210.02061 * 19 18 17 31 31 H 1.08991 * 109.47191 * 330.02749 * 19 18 17 32 32 H 1.07997 * 120.85984 * 0.02562 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7106 -1.2304 5 1 2.6533 -1.5887 -1.1311 6 6 1.7041 -0.2362 -2.4826 7 7 0.9480 0.8330 -2.6035 8 14 2.3331 -1.1125 -4.0077 9 1 1.3570 -2.1535 -4.4186 10 1 2.5020 -0.1303 -5.1087 11 1 3.6403 -1.7503 -3.7084 12 6 2.0323 -0.7104 1.2306 13 6 1.6993 -2.0380 1.4535 14 7 2.1259 -2.6793 2.5197 15 6 2.8937 -2.0820 3.4267 16 6 3.5071 -2.5211 4.6816 17 6 4.1832 -1.4719 5.1787 18 7 4.0539 -0.3969 4.3451 19 6 4.6567 0.9196 4.5688 20 6 3.2717 -0.7358 3.2648 21 6 2.8323 -0.0430 2.1402 22 1 -0.3633 0.5139 0.8899 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0276 -0.0005 25 1 0.7173 1.1669 -3.4844 26 1 1.0776 -2.5554 0.7378 27 1 3.4305 -3.5032 5.1242 28 1 4.7464 -1.4775 6.1002 29 1 5.6453 0.9491 4.1104 30 1 4.0262 1.6884 4.1223 31 1 4.7472 1.1006 5.6397 32 1 3.1067 0.9897 1.9835 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260184181.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:13 Heat of formation + Delta-G solvation = 45.387116 kcal Electronic energy + Delta-G solvation = -15401.941748 eV Core-core repulsion = 12941.079110 eV Total energy + Delta-G solvation = -2460.862638 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.39390 -39.24377 -36.34797 -34.09676 -32.66992 -31.95244 -29.12458 -27.25068 -27.19346 -24.26988 -24.05854 -21.82510 -20.67358 -18.62583 -18.00555 -17.28236 -16.99523 -16.36765 -16.34701 -15.15534 -14.72065 -14.50635 -14.30597 -14.02270 -13.70977 -13.44396 -13.19759 -13.16129 -12.94431 -12.82442 -12.41964 -12.22588 -12.14810 -11.68228 -11.22235 -10.75956 -10.51971 -10.12386 -9.09829 -8.75605 -8.09946 -6.24061 0.18642 0.53107 1.42223 1.43701 1.53424 1.79107 1.90773 2.43938 3.07755 3.18483 3.45762 3.78179 3.95227 4.10962 4.22925 4.41066 4.48579 4.57336 4.71708 4.73856 4.83698 4.96483 5.07200 5.13445 5.23893 5.39675 5.53054 5.59977 5.74910 5.91437 6.04061 6.17236 6.34283 6.43289 6.82881 7.21461 7.44026 8.94276 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037766 B = 0.006635 C = 0.006434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 741.234183 B = 4218.963135 C = 4350.656839 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.083 3.917 3 H 0.012 0.988 4 C -0.524 4.524 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.953 3.047 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.274 1.274 12 C -0.086 4.086 13 C 0.089 3.911 14 N -0.480 5.480 15 C 0.037 3.963 16 C -0.223 4.223 17 C 0.087 3.913 18 N -0.487 5.487 19 C 0.072 3.928 20 C 0.037 3.963 21 C -0.106 4.106 22 H 0.024 0.976 23 H 0.064 0.936 24 H 0.033 0.967 25 H 0.263 0.737 26 H 0.149 0.851 27 H 0.165 0.835 28 H 0.227 0.773 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.120 0.880 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.235 0.183 15.142 16.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.064 3.936 3 H 0.030 0.970 4 C -0.562 4.562 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.553 5.553 8 Si 0.778 3.222 9 H -0.199 1.199 10 H -0.206 1.206 11 H -0.199 1.199 12 C -0.089 4.089 13 C -0.077 4.077 14 N -0.188 5.188 15 C -0.095 4.095 16 C -0.249 4.249 17 C -0.040 4.040 18 N -0.171 5.171 19 C -0.068 4.068 20 C -0.071 4.071 21 C -0.135 4.135 22 H 0.043 0.957 23 H 0.083 0.917 24 H 0.052 0.948 25 H 0.072 0.928 26 H 0.166 0.834 27 H 0.182 0.818 28 H 0.244 0.756 29 H 0.097 0.903 30 H 0.094 0.906 31 H 0.138 0.862 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.116 -0.276 15.274 16.853 hybrid contribution 0.218 0.578 -1.491 1.613 sum 7.333 0.302 13.783 15.616 Atomic orbital electron populations 1.21639 0.97029 0.99484 0.99865 1.17633 0.93280 0.93985 0.88681 0.96954 1.21320 1.31436 1.12301 0.91127 0.93415 1.25639 0.95172 0.95604 1.01532 1.69988 1.37405 1.23756 1.24146 0.85639 0.78775 0.78480 0.79274 1.19893 1.20572 1.19935 1.21090 0.96049 0.95409 0.96343 1.22413 0.99232 0.92058 0.94021 1.67095 1.10668 1.38620 1.02429 1.20769 1.00072 0.91194 0.97515 1.21760 1.06574 1.01557 0.94960 1.22591 1.00065 0.84316 0.96996 1.44005 1.42620 1.12853 1.17596 1.22263 0.98825 0.80342 1.05410 1.19149 0.99271 0.96421 0.92293 1.20475 1.00119 1.00350 0.92546 0.95701 0.91727 0.94806 0.92751 0.83381 0.81783 0.75647 0.90312 0.90558 0.86175 0.84870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.02 8.79 71.98 0.63 -5.39 16 2 C 0.08 4.27 2.48 -12.28 -0.03 4.24 16 3 H 0.01 0.67 7.91 -2.39 -0.02 0.66 16 4 C -0.52 -29.13 8.24 25.60 0.21 -28.92 16 5 H 0.05 2.69 7.61 -2.91 -0.02 2.67 16 6 C 0.02 1.08 5.31 84.65 0.45 1.53 16 7 N -0.91 -52.01 11.33 21.45 0.24 -51.77 16 8 Si 0.95 43.87 29.54 68.60 2.03 45.90 16 9 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 12 C -0.09 -3.95 4.75 -19.74 -0.09 -4.04 16 13 C 0.09 4.06 9.87 84.84 0.84 4.90 16 14 N -0.48 -21.17 10.42 -185.10 -1.93 -23.10 16 15 C 0.04 1.45 7.52 41.71 0.31 1.77 16 16 C -0.22 -6.32 11.08 23.51 0.26 -6.06 16 17 C 0.09 1.81 11.28 83.06 0.94 2.74 16 18 N -0.49 -12.30 3.17 -539.25 -1.71 -14.01 16 19 C 0.07 1.11 11.03 127.77 1.41 2.52 16 20 C 0.04 1.34 6.82 39.08 0.27 1.60 16 21 C -0.11 -4.28 9.72 22.52 0.22 -4.06 16 22 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 23 H 0.06 3.46 6.08 -2.38 -0.01 3.44 16 24 H 0.03 1.59 7.39 -2.39 -0.02 1.57 16 25 H 0.26 14.21 8.31 -92.71 -0.77 13.44 16 26 H 0.15 6.76 7.56 -2.91 -0.02 6.73 16 27 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 28 H 0.23 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.08 1.28 8.12 -2.39 -0.02 1.26 16 31 H 0.12 0.94 8.13 -2.39 -0.02 0.92 16 32 H 0.13 4.87 7.99 -2.91 -0.02 4.85 16 Total: -1.00 -69.07 274.14 5.15 -63.92 By element: Atomic # 1 Polarization: 7.12 SS G_CDS: 1.11 Total: 8.22 kcal Atomic # 6 Polarization: -34.57 SS G_CDS: 5.41 Total: -29.16 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -3.40 Total: -88.88 kcal Atomic # 14 Polarization: 43.87 SS G_CDS: 2.03 Total: 45.90 kcal Total: -69.07 5.15 -63.92 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184181.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.304 kcal (2) G-P(sol) polarization free energy of solvation -69.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.149 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds