Wall clock time and date at job start Mon Mar 30 2020 03:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.46741 * 2 1 4 4 C 1.50697 * 109.47190 * 119.99839 * 2 1 3 5 5 H 1.07998 * 119.99926 * 119.99879 * 4 2 1 6 6 C 1.37878 * 119.99997 * 300.00033 * 4 2 1 7 7 N 1.31515 * 120.00001 * 359.97438 * 6 4 2 8 8 Si 1.86803 * 120.00239 * 180.02562 * 6 4 2 9 9 H 1.48500 * 109.46787 * 59.99544 * 8 6 4 10 10 H 1.48492 * 109.47428 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.46972 * 299.99964 * 8 6 4 12 12 C 1.50694 * 109.46881 * 239.99907 * 2 1 3 13 13 C 1.38676 * 120.16493 * 300.01927 * 12 2 1 14 14 N 1.31530 * 121.27828 * 179.97438 * 13 12 2 15 15 C 1.32997 * 121.40292 * 0.02562 * 14 13 12 16 16 C 1.46428 * 133.75896 * 180.02562 * 15 14 13 17 17 C 1.34354 * 107.07994 * 179.97438 * 16 15 14 18 18 N 1.36638 * 109.94591 * 359.77240 * 17 16 15 19 19 C 1.46503 * 125.09568 * 180.29641 * 18 17 16 20 20 C 1.37624 * 109.80699 * 0.38419 * 18 17 16 21 21 C 1.38306 * 120.16290 * 120.00169 * 12 2 1 22 22 H 1.08998 * 109.46982 * 180.02562 * 1 2 3 23 23 H 1.09009 * 109.47037 * 300.00310 * 1 2 3 24 24 H 1.09002 * 109.46948 * 59.99847 * 1 2 3 25 25 H 0.97000 * 120.00098 * 179.97438 * 7 6 4 26 26 H 1.07999 * 119.36187 * 0.02562 * 13 12 2 27 27 H 1.08001 * 126.45751 * 359.94489 * 16 15 14 28 28 H 1.08000 * 125.03035 * 180.02562 * 17 16 15 29 29 H 1.09000 * 109.46868 * 270.09515 * 19 18 17 30 30 H 1.08992 * 109.47338 * 30.09881 * 19 18 17 31 31 H 1.09004 * 109.46749 * 150.09506 * 19 18 17 32 32 H 1.07996 * 120.85863 * 359.97438 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6532 -1.5884 1.1314 6 6 1.6993 -0.2393 2.4827 7 7 0.9436 0.8303 2.6034 8 14 2.3225 -1.1194 4.0080 9 1 3.8075 -1.1188 4.0077 10 1 1.8280 -0.4190 5.2204 11 1 1.8281 -2.5196 4.0083 12 6 2.0323 -0.7104 -1.2304 13 6 1.6990 -2.0379 -1.4534 14 7 2.1248 -2.6790 -2.5201 15 6 2.8921 -2.0816 -3.4274 16 6 3.5046 -2.5205 -4.6829 17 6 4.1806 -1.4712 -5.1801 18 7 4.0473 -0.3948 -4.3492 19 6 4.6441 0.9237 -4.5765 20 6 3.2702 -0.7354 -3.2656 21 6 2.8276 -0.0416 -2.1430 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8900 24 1 -0.3633 0.5139 -0.8900 25 1 0.7089 1.1615 3.4843 26 1 1.0770 -2.5552 -0.7379 27 1 3.4279 -3.5027 -5.1254 28 1 4.7424 -1.4765 -6.1024 29 1 5.6338 0.9580 -4.1211 30 1 4.7308 1.1035 -5.6480 31 1 4.0116 1.6907 -4.1295 32 1 3.0983 0.9925 -1.9888 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260184184.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:02:14 Heat of formation + Delta-G solvation = 45.510122 kcal Electronic energy + Delta-G solvation = -15401.883166 eV Core-core repulsion = 12941.025862 eV Total energy + Delta-G solvation = -2460.857304 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 230.111 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -42.39433 -39.24499 -36.34879 -34.09685 -32.66915 -31.95205 -29.12433 -27.24944 -27.19186 -24.27013 -24.05904 -21.82493 -20.67376 -18.62449 -18.00314 -17.28033 -16.99631 -16.36901 -16.34781 -15.15637 -14.71783 -14.50475 -14.30433 -14.02271 -13.70995 -13.44193 -13.19693 -13.16077 -12.94610 -12.81983 -12.43191 -12.22930 -12.13668 -11.67865 -11.22753 -10.76111 -10.51865 -10.12305 -9.09875 -8.75598 -8.09735 -6.23912 0.18618 0.53057 1.43241 1.44191 1.52077 1.79121 1.90744 2.44043 3.07764 3.18587 3.45689 3.78176 3.95178 4.10972 4.22883 4.41052 4.48608 4.57310 4.71725 4.73855 4.83696 4.96454 5.07188 5.13436 5.23916 5.39613 5.53024 5.59862 5.74874 5.91497 6.04067 6.17228 6.34371 6.43299 6.82780 7.21448 7.44048 8.94284 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.037841 B = 0.006633 C = 0.006429 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 739.759094 B = 4220.092806 C = 4354.186227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.084 3.916 3 H 0.012 0.988 4 C -0.525 4.525 5 H 0.048 0.952 6 C 0.020 3.980 7 N -0.914 5.914 8 Si 0.952 3.048 9 H -0.275 1.275 10 H -0.280 1.280 11 H -0.272 1.272 12 C -0.085 4.085 13 C 0.089 3.911 14 N -0.480 5.480 15 C 0.037 3.963 16 C -0.223 4.223 17 C 0.087 3.913 18 N -0.487 5.487 19 C 0.072 3.928 20 C 0.037 3.963 21 C -0.106 4.106 22 H 0.033 0.967 23 H 0.064 0.936 24 H 0.024 0.976 25 H 0.263 0.737 26 H 0.149 0.851 27 H 0.165 0.835 28 H 0.227 0.773 29 H 0.078 0.922 30 H 0.120 0.880 31 H 0.076 0.924 32 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.219 0.186 -15.154 16.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.065 3.935 3 H 0.030 0.970 4 C -0.563 4.563 5 H 0.066 0.934 6 C -0.179 4.179 7 N -0.553 5.553 8 Si 0.778 3.222 9 H -0.201 1.201 10 H -0.205 1.205 11 H -0.197 1.197 12 C -0.089 4.089 13 C -0.077 4.077 14 N -0.188 5.188 15 C -0.095 4.095 16 C -0.249 4.249 17 C -0.040 4.040 18 N -0.171 5.171 19 C -0.068 4.068 20 C -0.071 4.071 21 C -0.135 4.135 22 H 0.052 0.948 23 H 0.083 0.917 24 H 0.043 0.957 25 H 0.073 0.927 26 H 0.166 0.834 27 H 0.182 0.818 28 H 0.244 0.756 29 H 0.097 0.903 30 H 0.138 0.862 31 H 0.094 0.906 32 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.091 -0.270 -15.286 16.853 hybrid contribution 0.227 0.570 1.489 1.611 sum 7.318 0.301 -13.796 15.620 Atomic orbital electron populations 1.21643 0.97036 0.99477 0.99879 1.17625 0.93270 0.93978 0.88677 0.96968 1.21297 1.31451 1.12432 0.91137 0.93396 1.25640 0.95131 0.95627 1.01521 1.69982 1.37278 1.23794 1.24214 0.85703 0.78629 0.78944 0.78956 1.20088 1.20537 1.19674 1.21084 0.96073 0.95400 0.96319 1.22406 0.99223 0.92074 0.94023 1.67092 1.10694 1.38604 1.02421 1.20768 1.00059 0.91224 0.97487 1.21762 1.06535 1.01588 0.94967 1.22590 1.00039 0.84292 0.97039 1.44005 1.42920 1.12671 1.17483 1.22263 0.98924 0.80267 1.05385 1.19150 0.99340 0.96395 0.92237 1.20473 1.00139 1.00312 0.92566 0.94822 0.91699 0.95703 0.92740 0.83414 0.81782 0.75648 0.90315 0.86175 0.90555 0.84869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.03 8.78 71.98 0.63 -5.40 16 2 C 0.08 4.29 2.48 -12.29 -0.03 4.26 16 3 H 0.01 0.67 7.91 -2.39 -0.02 0.65 16 4 C -0.53 -29.22 8.24 25.60 0.21 -29.00 16 5 H 0.05 2.70 7.61 -2.91 -0.02 2.67 16 6 C 0.02 1.10 5.30 84.65 0.45 1.55 16 7 N -0.91 -52.02 11.32 21.45 0.24 -51.78 16 8 Si 0.95 43.84 29.54 68.60 2.03 45.87 16 9 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 10 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 11 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 12 C -0.09 -3.94 4.74 -19.75 -0.09 -4.03 16 13 C 0.09 4.06 9.87 84.84 0.84 4.90 16 14 N -0.48 -21.18 10.42 -185.11 -1.93 -23.11 16 15 C 0.04 1.46 7.52 41.72 0.31 1.77 16 16 C -0.22 -6.32 11.08 23.52 0.26 -6.06 16 17 C 0.09 1.81 11.28 83.06 0.94 2.75 16 18 N -0.49 -12.30 3.17 -539.25 -1.71 -14.01 16 19 C 0.07 1.11 11.03 127.77 1.41 2.52 16 20 C 0.04 1.34 6.82 39.08 0.27 1.61 16 21 C -0.11 -4.28 9.72 22.52 0.22 -4.06 16 22 H 0.03 1.58 7.39 -2.39 -0.02 1.56 16 23 H 0.06 3.47 6.07 -2.38 -0.01 3.46 16 24 H 0.02 1.09 8.14 -2.39 -0.02 1.07 16 25 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 26 H 0.15 6.76 7.56 -2.91 -0.02 6.73 16 27 H 0.16 3.89 8.06 -2.91 -0.02 3.87 16 28 H 0.23 1.95 8.06 -2.91 -0.02 1.93 16 29 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 30 H 0.12 0.94 8.13 -2.39 -0.02 0.92 16 31 H 0.08 1.28 8.11 -2.38 -0.02 1.26 16 32 H 0.13 4.87 7.99 -2.91 -0.02 4.85 16 Total: -1.00 -69.00 274.11 5.15 -63.85 By element: Atomic # 1 Polarization: 7.26 SS G_CDS: 1.11 Total: 8.36 kcal Atomic # 6 Polarization: -34.61 SS G_CDS: 5.41 Total: -29.20 kcal Atomic # 7 Polarization: -85.49 SS G_CDS: -3.40 Total: -88.89 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.87 kcal Total: -69.00 5.15 -63.85 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260184184.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.364 kcal (2) G-P(sol) polarization free energy of solvation -69.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.148 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.854 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds