Wall clock time and date at job start Mon Mar 30 2020 03:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38259 * 119.99971 * 2 1 4 4 C 1.38207 * 119.99747 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99780 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.00219 * 0.28041 * 4 3 2 7 7 C 1.50698 * 119.99933 * 179.72535 * 6 4 3 8 8 C 1.50700 * 115.55483 * 39.44124 * 7 6 4 9 9 H 1.08003 * 120.00067 * 266.46341 * 8 7 6 10 10 C 1.37871 * 119.99875 * 86.45740 * 8 7 6 11 11 N 1.31518 * 119.99774 * 174.34164 * 10 8 7 12 12 Si 1.86794 * 120.00220 * 354.34060 * 10 8 7 13 13 H 1.48495 * 109.47147 * 92.87276 * 12 10 8 14 14 H 1.48501 * 109.47281 * 212.87414 * 12 10 8 15 15 H 1.48500 * 109.47206 * 332.87456 * 12 10 8 16 16 C 1.53000 * 117.49512 * 253.73568 * 7 6 4 17 17 C 1.53001 * 117.49856 * 185.11381 * 7 6 4 18 18 C 1.38210 * 119.99503 * 359.52996 * 6 4 3 19 19 C 1.38211 * 119.99918 * 179.97438 * 2 1 3 20 20 C 1.50703 * 120.00249 * 0.02562 * 19 2 1 21 21 H 1.08999 * 109.46652 * 89.99651 * 1 2 3 22 22 H 1.08997 * 109.47167 * 209.99987 * 1 2 3 23 23 H 1.09002 * 109.47066 * 330.00075 * 1 2 3 24 24 H 1.07995 * 119.99945 * 359.97438 * 3 2 1 25 25 H 1.09009 * 109.46971 * 94.80789 * 5 4 3 26 26 H 1.09004 * 109.46992 * 214.80088 * 5 4 3 27 27 H 1.08992 * 109.47495 * 334.80681 * 5 4 3 28 28 H 0.97001 * 119.99695 * 180.02562 * 11 10 8 29 29 H 1.08997 * 117.49982 * 359.97438 * 16 7 6 30 30 H 1.09005 * 117.50132 * 145.02439 * 16 7 6 31 31 H 1.08996 * 117.50048 * 214.98091 * 17 7 6 32 32 H 1.09002 * 117.49407 * 359.97438 * 17 7 6 33 33 H 1.08004 * 119.99769 * 180.23354 * 18 6 4 34 34 H 1.08999 * 109.47048 * 89.99720 * 20 19 2 35 35 H 1.09001 * 109.47278 * 209.99967 * 20 19 2 36 36 H 1.09004 * 109.46833 * 329.99897 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.3339 2.5024 0.0011 6 6 4.2717 -0.0001 -0.0048 7 6 5.7787 -0.0001 -0.0105 8 6 6.4320 1.0480 0.8532 9 1 6.7154 1.9990 0.4270 10 6 6.6679 0.7927 2.1874 11 7 7.3368 1.6606 2.9147 12 14 6.0373 -0.7857 2.9620 13 1 7.0940 -1.8268 2.8946 14 1 5.6814 -0.5328 4.3814 15 1 4.8350 -1.2525 2.2259 16 6 6.4802 -0.3772 -1.3168 17 6 6.4847 -1.3515 -0.1372 18 6 3.5806 -1.1970 -0.0008 19 6 2.1981 -1.1970 0.0005 20 6 1.4446 -2.5021 0.0005 21 1 -0.3632 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6584 2.1326 -0.0004 25 1 4.5898 2.7738 1.0254 26 1 5.2466 2.3952 -0.5851 27 1 3.7105 3.2821 -0.4364 28 1 7.5030 1.4808 3.8533 29 1 5.8517 -0.6257 -2.1720 30 1 7.4144 0.1328 -1.5519 31 1 7.4218 -1.4825 0.4039 32 1 5.8591 -2.2406 -0.2160 33 1 4.1206 -2.1323 -0.0012 34 1 1.2633 -2.8170 -1.0271 35 1 2.0335 -3.2616 0.5148 36 1 0.4920 -2.3716 0.5140 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260190130.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:20 Heat of formation + Delta-G solvation = 36.367612 kcal Electronic energy + Delta-G solvation = -16316.527177 eV Core-core repulsion = 13958.813767 eV Total energy + Delta-G solvation = -2357.713410 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.44288 -36.60067 -33.34445 -32.17068 -31.34563 -28.71522 -26.93145 -25.38985 -24.22159 -22.17059 -21.08234 -20.18119 -18.33408 -16.62900 -15.21682 -15.06084 -14.57673 -13.97847 -13.89117 -13.60417 -12.90930 -12.61752 -12.54614 -12.43533 -12.22881 -12.04960 -11.63134 -11.28303 -11.08632 -10.96666 -10.79974 -10.53417 -10.32424 -10.19475 -9.80023 -9.57081 -9.32023 -8.65200 -8.53098 -7.88225 -7.35802 -6.09779 -4.10931 2.06770 2.09085 3.33264 3.43347 3.55930 4.33839 4.48835 5.03492 5.18270 5.26551 5.34141 5.46727 5.50943 5.69341 5.73435 5.83467 5.91669 5.99932 6.06228 6.11884 6.15807 6.17776 6.32176 6.40675 6.52369 6.63367 6.72153 6.76846 6.81119 7.01001 7.10988 7.18143 7.27058 7.31723 7.63068 7.78518 7.83741 8.48306 8.89748 9.53638 11.00313 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.025279 B = 0.010592 C = 0.010054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.382475 B = 2642.952489 C = 2784.427726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.109 4.109 3 C -0.128 4.128 4 C -0.058 4.058 5 C -0.097 4.097 6 C -0.022 4.022 7 C 0.033 3.967 8 C -0.480 4.480 9 H 0.085 0.915 10 C 0.082 3.918 11 N -0.897 5.897 12 Si 0.864 3.136 13 H -0.281 1.281 14 H -0.296 1.296 15 H -0.245 1.245 16 C -0.171 4.171 17 C -0.200 4.200 18 C -0.122 4.122 19 C -0.107 4.107 20 C -0.109 4.109 21 H 0.061 0.939 22 H 0.062 0.938 23 H 0.058 0.942 24 H 0.112 0.888 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.032 0.968 28 H 0.264 0.736 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.088 0.912 32 H 0.074 0.926 33 H 0.113 0.887 34 H 0.061 0.939 35 H 0.058 0.942 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.297 -4.731 -5.873 12.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.109 4.109 3 C -0.146 4.146 4 C -0.058 4.058 5 C -0.153 4.153 6 C -0.023 4.023 7 C 0.032 3.968 8 C -0.517 4.517 9 H 0.103 0.897 10 C -0.121 4.121 11 N -0.534 5.534 12 Si 0.691 3.309 13 H -0.207 1.207 14 H -0.223 1.223 15 H -0.168 1.168 16 C -0.208 4.208 17 C -0.237 4.237 18 C -0.140 4.140 19 C -0.107 4.107 20 C -0.165 4.165 21 H 0.079 0.921 22 H 0.081 0.919 23 H 0.077 0.923 24 H 0.130 0.870 25 H 0.098 0.902 26 H 0.098 0.902 27 H 0.051 0.949 28 H 0.074 0.926 29 H 0.090 0.910 30 H 0.107 0.893 31 H 0.107 0.893 32 H 0.092 0.908 33 H 0.131 0.869 34 H 0.080 0.920 35 H 0.077 0.923 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.228 -4.683 -5.683 12.603 hybrid contribution -0.197 -0.931 0.712 1.188 sum -10.424 -5.615 -4.971 12.841 Atomic orbital electron populations 1.20738 0.92321 1.01966 1.01381 1.19489 0.95030 0.92839 1.03591 1.20800 0.93763 0.96709 1.03357 1.19737 0.92521 0.95908 0.97631 1.20887 0.99172 0.91700 1.03528 1.19696 0.95526 0.91595 0.95438 1.18238 0.86914 0.94702 0.96927 1.20293 1.37831 1.00513 0.93060 0.89678 1.24894 0.93775 0.96406 0.97020 1.69891 1.39396 1.36206 1.07874 0.86996 0.81116 0.84384 0.78384 1.20676 1.22258 1.16826 1.22835 1.02329 1.04230 0.91386 1.23028 1.02996 0.93898 1.03821 1.20930 0.92960 0.98063 1.02088 1.19527 0.93659 0.94268 1.03259 1.20754 0.99677 0.94700 1.01410 0.92069 0.91893 0.92292 0.87038 0.90166 0.90181 0.94859 0.92632 0.90960 0.89309 0.89329 0.90765 0.86946 0.92002 0.92333 0.91829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.39 9.61 36.01 0.35 -1.05 16 2 C -0.11 -1.87 5.88 -104.62 -0.62 -2.49 16 3 C -0.13 -2.35 9.34 -39.59 -0.37 -2.72 16 4 C -0.06 -1.21 5.82 -104.62 -0.61 -1.82 16 5 C -0.10 -1.97 8.12 36.01 0.29 -1.68 16 6 C -0.02 -0.48 4.45 -104.62 -0.47 -0.95 16 7 C 0.03 0.76 0.71 -156.81 -0.11 0.65 16 8 C -0.48 -12.72 6.48 -34.44 -0.22 -12.94 16 9 H 0.09 2.41 6.69 -52.48 -0.35 2.05 16 10 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 11 N -0.90 -26.66 13.96 55.43 0.77 -25.89 16 12 Si 0.86 21.72 25.51 -169.99 -4.34 17.38 16 13 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 14 H -0.30 -7.60 7.11 56.52 0.40 -7.20 16 15 H -0.24 -5.95 5.17 56.52 0.29 -5.66 16 16 C -0.17 -3.47 9.94 -26.73 -0.27 -3.73 16 17 C -0.20 -4.26 7.41 -26.73 -0.20 -4.46 16 18 C -0.12 -2.45 7.86 -39.59 -0.31 -2.76 16 19 C -0.11 -1.90 5.88 -104.62 -0.62 -2.51 16 20 C -0.11 -1.50 9.60 36.01 0.35 -1.15 16 21 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 22 H 0.06 0.74 5.95 -51.93 -0.31 0.43 16 23 H 0.06 0.70 8.09 -51.93 -0.42 0.28 16 24 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 25 H 0.08 1.82 7.59 -51.92 -0.39 1.43 16 26 H 0.08 1.72 5.76 -51.93 -0.30 1.42 16 27 H 0.03 0.57 8.05 -51.93 -0.42 0.15 16 28 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.09 1.79 8.14 -51.93 -0.42 1.36 16 31 H 0.09 1.97 7.55 -51.93 -0.39 1.58 16 32 H 0.07 1.44 6.12 -51.93 -0.32 1.12 16 33 H 0.11 2.16 5.96 -52.48 -0.31 1.84 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.06 0.78 8.09 -51.93 -0.42 0.36 16 36 H 0.06 0.77 5.95 -51.93 -0.31 0.46 16 LS Contribution 280.15 15.07 4.22 4.22 Total: -1.00 -29.05 280.15 -7.54 -36.59 By element: Atomic # 1 Polarization: 8.42 SS G_CDS: -5.30 Total: 3.12 kcal Atomic # 6 Polarization: -32.53 SS G_CDS: -2.90 Total: -35.43 kcal Atomic # 7 Polarization: -26.66 SS G_CDS: 0.77 Total: -25.89 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -4.34 Total: 17.38 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.05 -7.54 -36.59 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260190130.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.953 kcal (2) G-P(sol) polarization free energy of solvation -29.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.908 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.540 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds