Wall clock time and date at job start Mon Mar 30 2020 03:31:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38259 * 119.99971 * 2 1 4 4 C 1.38207 * 119.99747 * 179.97438 * 3 2 1 5 5 C 1.50700 * 119.99780 * 180.02562 * 4 3 2 6 6 C 1.38266 * 120.00219 * 0.28041 * 4 3 2 7 7 C 1.50698 * 119.99933 * 179.72535 * 6 4 3 8 8 C 1.50700 * 115.55483 * 39.44124 * 7 6 4 9 9 H 1.08003 * 120.00067 * 266.46341 * 8 7 6 10 10 C 1.37871 * 119.99875 * 86.45740 * 8 7 6 11 11 N 1.31518 * 119.99774 * 174.34164 * 10 8 7 12 12 Si 1.86794 * 120.00220 * 354.34060 * 10 8 7 13 13 H 1.48495 * 109.47147 * 92.87276 * 12 10 8 14 14 H 1.48501 * 109.47281 * 212.87414 * 12 10 8 15 15 H 1.48500 * 109.47206 * 332.87456 * 12 10 8 16 16 C 1.53000 * 117.49512 * 253.73568 * 7 6 4 17 17 C 1.53001 * 117.49856 * 185.11381 * 7 6 4 18 18 C 1.38210 * 119.99503 * 359.52996 * 6 4 3 19 19 C 1.38211 * 119.99918 * 179.97438 * 2 1 3 20 20 C 1.50703 * 120.00249 * 0.02562 * 19 2 1 21 21 H 1.08999 * 109.46652 * 89.99651 * 1 2 3 22 22 H 1.08997 * 109.47167 * 209.99987 * 1 2 3 23 23 H 1.09002 * 109.47066 * 330.00075 * 1 2 3 24 24 H 1.07995 * 119.99945 * 359.97438 * 3 2 1 25 25 H 1.09009 * 109.46971 * 94.80789 * 5 4 3 26 26 H 1.09004 * 109.46992 * 214.80088 * 5 4 3 27 27 H 1.08992 * 109.47495 * 334.80681 * 5 4 3 28 28 H 0.97001 * 119.99695 * 180.02562 * 11 10 8 29 29 H 1.08997 * 117.49982 * 359.97438 * 16 7 6 30 30 H 1.09005 * 117.50132 * 145.02439 * 16 7 6 31 31 H 1.08996 * 117.50048 * 214.98091 * 17 7 6 32 32 H 1.09002 * 117.49407 * 359.97438 * 17 7 6 33 33 H 1.08004 * 119.99769 * 180.23354 * 18 6 4 34 34 H 1.08999 * 109.47048 * 89.99720 * 20 19 2 35 35 H 1.09001 * 109.47278 * 209.99967 * 20 19 2 36 36 H 1.09004 * 109.46833 * 329.99897 * 20 19 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1973 0.0005 5 6 4.3339 2.5024 0.0011 6 6 4.2717 -0.0001 -0.0048 7 6 5.7787 -0.0001 -0.0105 8 6 6.4320 1.0480 0.8532 9 1 6.7154 1.9990 0.4270 10 6 6.6679 0.7927 2.1874 11 7 7.3368 1.6606 2.9147 12 14 6.0373 -0.7857 2.9620 13 1 7.0940 -1.8268 2.8946 14 1 5.6814 -0.5328 4.3814 15 1 4.8350 -1.2525 2.2259 16 6 6.4802 -0.3772 -1.3168 17 6 6.4847 -1.3515 -0.1372 18 6 3.5806 -1.1970 -0.0008 19 6 2.1981 -1.1970 0.0005 20 6 1.4446 -2.5021 0.0005 21 1 -0.3632 0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5138 23 1 -0.3633 0.8900 0.5138 24 1 1.6584 2.1326 -0.0004 25 1 4.5898 2.7738 1.0254 26 1 5.2466 2.3952 -0.5851 27 1 3.7105 3.2821 -0.4364 28 1 7.5030 1.4808 3.8533 29 1 5.8517 -0.6257 -2.1720 30 1 7.4144 0.1328 -1.5519 31 1 7.4218 -1.4825 0.4039 32 1 5.8591 -2.2406 -0.2160 33 1 4.1206 -2.1323 -0.0012 34 1 1.2633 -2.8170 -1.0271 35 1 2.0335 -3.2616 0.5148 36 1 0.4920 -2.3716 0.5140 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260190130.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:31:20 Heat of formation + Delta-G solvation = 21.319390 kcal Electronic energy + Delta-G solvation = -16317.179717 eV Core-core repulsion = 13958.813767 eV Total energy + Delta-G solvation = -2358.365949 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.92656 -38.20295 -34.78493 -34.24369 -32.68929 -30.11674 -28.41213 -27.18235 -25.62530 -23.74184 -22.64752 -21.77126 -19.99267 -18.51989 -16.82667 -16.62184 -16.30150 -15.38759 -15.19730 -15.10411 -14.83762 -14.13626 -14.06269 -13.66899 -13.52395 -13.46847 -13.02556 -12.95676 -12.72540 -12.51318 -12.40428 -12.18651 -11.90604 -11.65831 -11.54384 -11.39324 -11.05374 -10.65254 -10.43077 -9.33388 -8.84560 -8.25832 -6.27497 0.62668 0.63842 1.31298 1.37695 1.54064 2.40089 2.86426 3.09123 3.37893 3.98037 4.04096 4.10772 4.23081 4.36334 4.38192 4.48394 4.54935 4.74452 4.78505 4.79799 4.86718 4.94382 4.95782 5.06950 5.07551 5.09467 5.14208 5.19949 5.32197 5.44764 5.55973 5.59988 5.68877 5.82003 5.89690 6.12124 6.36566 6.38367 6.76589 7.38609 8.87791 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.025279 B = 0.010592 C = 0.010054 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.382475 B = 2642.952489 C = 2784.427726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.109 4.109 3 C -0.131 4.131 4 C -0.089 4.089 5 C -0.085 4.085 6 C -0.046 4.046 7 C 0.010 3.990 8 C -0.462 4.462 9 H 0.051 0.949 10 C 0.028 3.972 11 N -0.946 5.946 12 Si 0.915 3.085 13 H -0.274 1.274 14 H -0.306 1.306 15 H -0.229 1.229 16 C -0.156 4.156 17 C -0.195 4.195 18 C -0.138 4.138 19 C -0.108 4.108 20 C -0.108 4.108 21 H 0.080 0.920 22 H 0.079 0.921 23 H 0.068 0.932 24 H 0.132 0.868 25 H 0.045 0.955 26 H 0.058 0.942 27 H 0.062 0.938 28 H 0.262 0.738 29 H 0.096 0.904 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.081 0.919 35 H 0.061 0.939 36 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.353 -6.860 -6.976 16.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.109 4.109 3 C -0.149 4.149 4 C -0.089 4.089 5 C -0.141 4.141 6 C -0.047 4.047 7 C 0.010 3.990 8 C -0.499 4.499 9 H 0.069 0.931 10 C -0.169 4.169 11 N -0.587 5.587 12 Si 0.741 3.259 13 H -0.199 1.199 14 H -0.234 1.234 15 H -0.151 1.151 16 C -0.193 4.193 17 C -0.232 4.232 18 C -0.155 4.155 19 C -0.108 4.108 20 C -0.164 4.164 21 H 0.098 0.902 22 H 0.098 0.902 23 H 0.087 0.913 24 H 0.150 0.850 25 H 0.064 0.936 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.071 0.929 29 H 0.114 0.886 30 H 0.102 0.898 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.136 0.864 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.292 -6.827 -6.814 16.423 hybrid contribution 0.695 -0.199 0.948 1.192 sum -12.597 -7.026 -5.867 15.571 Atomic orbital electron populations 1.20815 0.88983 1.03375 1.02991 1.20009 0.97458 0.92014 1.01419 1.21085 0.92785 0.98528 1.02466 1.19875 0.93940 0.95369 0.99714 1.20666 0.99025 0.93294 1.01137 1.19592 0.94431 0.92889 0.97748 1.18137 0.88199 0.94634 0.98060 1.20423 1.36213 1.00063 0.93246 0.93116 1.25568 0.94462 0.99117 0.97770 1.70020 1.42135 1.38418 1.08080 0.86176 0.81317 0.81440 0.76947 1.19940 1.23368 1.15113 1.22856 1.02017 1.03040 0.91406 1.23034 1.02335 0.94075 1.03717 1.21076 0.94288 0.97380 1.02803 1.20014 0.93072 0.96429 1.01323 1.20833 1.00049 0.92487 1.03011 0.90183 0.90204 0.91280 0.84972 0.93645 0.92280 0.91964 0.92932 0.88580 0.89822 0.90767 0.88322 0.86372 0.90072 0.91993 0.89798 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 9.61 71.24 0.68 -1.51 16 2 C -0.11 -3.31 5.88 -19.86 -0.12 -3.43 16 3 C -0.13 -4.49 9.34 22.27 0.21 -4.28 16 4 C -0.09 -3.66 5.82 -19.87 -0.12 -3.78 16 5 C -0.08 -3.56 8.12 71.24 0.58 -2.98 16 6 C -0.05 -1.97 4.45 -19.87 -0.09 -2.06 16 7 C 0.01 0.48 0.71 -53.67 -0.04 0.44 16 8 C -0.46 -25.42 6.48 25.60 0.17 -25.26 16 9 H 0.05 3.06 6.69 -2.91 -0.02 3.04 16 10 C 0.03 1.63 5.47 84.65 0.46 2.09 16 11 N -0.95 -58.93 13.96 21.45 0.30 -58.63 16 12 Si 0.92 45.44 25.51 68.60 1.75 47.19 16 13 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 14 H -0.31 -15.58 7.11 99.48 0.71 -14.87 16 15 H -0.23 -10.65 5.17 99.48 0.51 -10.13 16 16 C -0.16 -6.22 9.94 30.60 0.30 -5.91 16 17 C -0.19 -8.02 7.41 30.60 0.23 -7.79 16 18 C -0.14 -5.15 7.86 22.27 0.18 -4.98 16 19 C -0.11 -3.43 5.88 -19.87 -0.12 -3.54 16 20 C -0.11 -2.43 9.60 71.24 0.68 -1.74 16 21 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.08 1.42 5.95 -2.39 -0.01 1.40 16 23 H 0.07 1.32 8.09 -2.39 -0.02 1.30 16 24 H 0.13 3.86 8.06 -2.91 -0.02 3.84 16 25 H 0.04 2.18 7.59 -2.38 -0.02 2.16 16 26 H 0.06 2.66 5.76 -2.38 -0.01 2.65 16 27 H 0.06 2.15 8.05 -2.39 -0.02 2.14 16 28 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 29 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 30 H 0.08 3.37 8.14 -2.38 -0.02 3.35 16 31 H 0.07 3.25 7.55 -2.39 -0.02 3.24 16 32 H 0.10 3.56 6.12 -2.39 -0.01 3.55 16 33 H 0.12 4.17 5.96 -2.91 -0.02 4.15 16 34 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 35 H 0.06 1.37 8.09 -2.39 -0.02 1.35 16 36 H 0.08 1.56 5.95 -2.38 -0.01 1.55 16 Total: -1.00 -64.75 280.15 5.93 -58.82 By element: Atomic # 1 Polarization: 16.48 SS G_CDS: 0.87 Total: 17.35 kcal Atomic # 6 Polarization: -67.75 SS G_CDS: 3.01 Total: -64.74 kcal Atomic # 7 Polarization: -58.93 SS G_CDS: 0.30 Total: -58.63 kcal Atomic # 14 Polarization: 45.44 SS G_CDS: 1.75 Total: 47.19 kcal Total: -64.75 5.93 -58.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260190130.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.140 kcal (2) G-P(sol) polarization free energy of solvation -64.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds