Wall clock time and date at job start Mon Mar 30 2020 03:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38258 * 119.99704 * 2 1 4 4 C 1.38219 * 119.99915 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00140 * 180.02562 * 4 3 2 6 6 C 1.38262 * 119.99766 * 0.28042 * 4 3 2 7 7 C 1.50703 * 119.99772 * 179.72318 * 6 4 3 8 8 C 1.38216 * 119.99851 * 359.52418 * 6 4 3 9 9 C 1.50698 * 119.99672 * 180.21296 * 8 6 4 10 10 C 1.50699 * 115.55062 * 40.79989 * 9 8 6 11 11 H 1.08003 * 120.00044 * 265.50183 * 10 9 8 12 12 C 1.37878 * 120.00129 * 85.50748 * 10 9 8 13 13 N 1.31512 * 120.00207 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99768 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46917 * 88.72522 * 14 12 10 16 16 H 1.48500 * 109.47393 * 208.72251 * 14 12 10 17 17 H 1.48498 * 109.47289 * 328.72660 * 14 12 10 18 18 C 1.53002 * 117.49894 * 255.09141 * 9 8 6 19 19 C 1.53000 * 117.49810 * 186.46967 * 9 8 6 20 20 C 1.38213 * 120.00381 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.46964 * 90.00606 * 1 2 3 22 22 H 1.09004 * 109.46957 * 210.00136 * 1 2 3 23 23 H 1.08995 * 109.46983 * 330.00435 * 1 2 3 24 24 H 1.07995 * 120.00337 * 359.97438 * 3 2 1 25 25 H 1.08997 * 109.47201 * 89.99838 * 5 4 3 26 26 H 1.09000 * 109.47176 * 210.00426 * 5 4 3 27 27 H 1.09007 * 109.47059 * 330.00003 * 5 4 3 28 28 H 1.08995 * 109.46917 * 96.56557 * 7 6 4 29 29 H 1.08996 * 109.46913 * 216.56378 * 7 6 4 30 30 H 1.09003 * 109.46749 * 336.56032 * 7 6 4 31 31 H 0.96997 * 120.00123 * 179.97438 * 13 12 10 32 32 H 1.09004 * 117.50133 * 0.02562 * 18 9 8 33 33 H 1.09004 * 117.49945 * 145.02163 * 18 9 8 34 34 H 1.09006 * 117.49976 * 214.98044 * 19 9 8 35 35 H 1.08996 * 117.49707 * 0.02562 * 19 9 8 36 36 H 1.08002 * 120.00035 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.3339 2.5025 0.0011 6 6 4.2717 0.0001 -0.0048 7 6 5.7788 0.0001 -0.0105 8 6 3.5807 -1.1969 -0.0007 9 6 4.3342 -2.5020 -0.0017 10 6 5.5537 -2.5490 0.8824 11 1 6.5281 -2.3315 0.4705 12 6 5.4256 -2.8699 2.2172 13 7 6.4899 -2.9114 2.9887 14 14 3.7402 -3.2456 2.9299 15 1 3.4520 -4.6948 2.7816 16 1 3.7190 -2.8815 4.3694 17 1 2.7098 -2.4593 2.2052 18 6 4.3804 -3.2901 -1.3122 19 6 3.5191 -3.7882 -0.1499 20 6 2.1982 -1.1969 -0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5137 24 1 1.6583 2.1327 -0.0004 25 1 4.5151 2.8170 1.0289 26 1 5.2865 2.3723 -0.5124 27 1 3.7450 3.2623 -0.5128 28 1 6.1459 -0.1196 1.0087 29 1 6.1397 -0.8239 -0.6259 30 1 6.1404 0.9440 -0.4186 31 1 6.3997 -3.1368 3.9278 32 1 3.8661 -2.8645 -2.1739 33 1 5.2931 -3.8428 -1.5353 34 1 3.8651 -4.6687 0.3917 35 1 2.4379 -3.6905 -0.2472 36 1 1.6582 -2.1323 -0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260246037.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:17 Heat of formation + Delta-G solvation = 35.980788 kcal Electronic energy + Delta-G solvation = -16370.686612 eV Core-core repulsion = 14012.956429 eV Total energy + Delta-G solvation = -2357.730184 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.43778 -36.46091 -33.74053 -32.09842 -31.02781 -28.69952 -26.66113 -25.74486 -24.17619 -22.15839 -21.50148 -19.39999 -18.59727 -16.59291 -15.29178 -15.05456 -14.66243 -14.03168 -13.74656 -13.34881 -12.98905 -12.85996 -12.48674 -12.34977 -12.10311 -12.02851 -11.61672 -11.29997 -11.10712 -10.92490 -10.74355 -10.49420 -10.40494 -10.10880 -9.82828 -9.56576 -9.32569 -8.71226 -8.48478 -7.74525 -7.45029 -6.09699 -4.11339 2.06432 2.11541 3.33257 3.43063 3.54381 4.34428 4.48455 5.01452 5.19426 5.28168 5.39706 5.48663 5.65429 5.71800 5.83821 5.84745 5.94222 5.99001 6.08908 6.12755 6.13319 6.20877 6.23065 6.47428 6.55612 6.66353 6.74847 6.76049 6.83219 7.03030 7.09813 7.19018 7.27252 7.32875 7.62501 7.78012 7.85236 8.48489 8.89764 9.53555 11.00546 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.021931 B = 0.011951 C = 0.010385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.441810 B = 2342.305981 C = 2695.639852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.106 4.106 3 C -0.138 4.138 4 C -0.099 4.099 5 C -0.110 4.110 6 C -0.060 4.060 7 C -0.099 4.099 8 C -0.016 4.016 9 C 0.033 3.967 10 C -0.479 4.479 11 H 0.085 0.915 12 C 0.081 3.919 13 N -0.897 5.897 14 Si 0.867 3.133 15 H -0.280 1.280 16 H -0.297 1.297 17 H -0.247 1.247 18 C -0.170 4.170 19 C -0.202 4.202 20 C -0.130 4.130 21 H 0.061 0.939 22 H 0.059 0.941 23 H 0.058 0.942 24 H 0.108 0.892 25 H 0.064 0.936 26 H 0.069 0.931 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.264 0.736 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.074 0.926 36 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.840 6.337 -6.057 11.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.106 4.106 3 C -0.156 4.156 4 C -0.099 4.099 5 C -0.167 4.167 6 C -0.060 4.060 7 C -0.155 4.155 8 C -0.016 4.016 9 C 0.032 3.968 10 C -0.516 4.516 11 H 0.103 0.897 12 C -0.121 4.121 13 N -0.534 5.534 14 Si 0.694 3.306 15 H -0.206 1.206 16 H -0.224 1.224 17 H -0.171 1.171 18 C -0.207 4.207 19 C -0.239 4.239 20 C -0.148 4.148 21 H 0.080 0.920 22 H 0.078 0.922 23 H 0.077 0.923 24 H 0.126 0.874 25 H 0.082 0.918 26 H 0.088 0.912 27 H 0.074 0.926 28 H 0.101 0.899 29 H 0.093 0.907 30 H 0.057 0.943 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.093 0.907 36 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -7.766 6.308 -5.865 11.597 hybrid contribution -1.029 -0.377 0.691 1.296 sum -8.795 5.931 -5.173 11.802 Atomic orbital electron populations 1.20681 0.92267 1.01897 1.01379 1.19679 0.95155 0.93369 1.02367 1.20591 0.93429 0.96638 1.04936 1.19673 0.93465 0.94763 1.01991 1.20780 1.00037 0.94060 1.01807 1.19578 0.96657 0.91193 0.98542 1.20932 0.90833 0.99993 1.03770 1.19672 0.92032 0.95013 0.94884 1.18245 0.96276 0.85461 0.96814 1.20278 0.91392 1.47329 0.92577 0.89724 1.24902 0.96244 0.94180 0.96789 1.69874 1.28867 1.48428 1.06254 0.86975 0.86514 0.79171 0.77908 1.20595 1.22372 1.17087 1.22834 1.01270 1.05123 0.91520 1.23041 0.96167 1.00652 1.04020 1.20929 0.94262 0.96808 1.02832 0.92005 0.92226 0.92284 0.87384 0.91774 0.91184 0.92620 0.89852 0.90716 0.94256 0.92614 0.90945 0.89315 0.89317 0.90722 0.87006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.46 10.01 36.01 0.36 -1.10 16 2 C -0.11 -1.89 5.88 -104.62 -0.62 -2.50 16 3 C -0.14 -2.39 9.36 -39.58 -0.37 -2.76 16 4 C -0.10 -1.81 5.88 -104.62 -0.62 -2.43 16 5 C -0.11 -1.62 9.60 36.00 0.35 -1.27 16 6 C -0.06 -1.25 5.82 -104.62 -0.61 -1.86 16 7 C -0.10 -2.02 7.80 36.01 0.28 -1.74 16 8 C -0.02 -0.34 4.64 -104.63 -0.49 -0.83 16 9 C 0.03 0.76 0.68 -156.81 -0.11 0.65 16 10 C -0.48 -12.69 6.50 -34.44 -0.22 -12.91 16 11 H 0.08 2.39 6.82 -52.48 -0.36 2.04 16 12 C 0.08 2.28 5.47 -17.82 -0.10 2.18 16 13 N -0.90 -26.65 13.96 55.43 0.77 -25.88 16 14 Si 0.87 21.79 25.23 -169.99 -4.29 17.50 16 15 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.30 -7.63 7.11 56.52 0.40 -7.23 16 17 H -0.25 -6.02 5.39 56.52 0.30 -5.72 16 18 C -0.17 -3.46 9.94 -26.73 -0.27 -3.72 16 19 C -0.20 -4.29 7.29 -26.73 -0.19 -4.48 16 20 C -0.13 -2.63 7.91 -39.59 -0.31 -2.94 16 21 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 22 H 0.06 0.80 8.09 -51.93 -0.42 0.38 16 23 H 0.06 0.72 8.08 -51.93 -0.42 0.30 16 24 H 0.11 1.58 8.06 -52.49 -0.42 1.15 16 25 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 26 H 0.07 0.98 5.87 -51.93 -0.31 0.68 16 27 H 0.05 0.69 8.09 -51.93 -0.42 0.27 16 28 H 0.08 1.91 7.46 -51.93 -0.39 1.52 16 29 H 0.07 1.59 6.06 -51.93 -0.31 1.27 16 30 H 0.04 0.67 5.71 -51.93 -0.30 0.37 16 31 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 32 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.09 1.78 8.14 -51.93 -0.42 1.35 16 34 H 0.09 1.97 7.33 -51.93 -0.38 1.59 16 35 H 0.07 1.45 6.13 -51.93 -0.32 1.14 16 36 H 0.11 2.16 5.98 -52.49 -0.31 1.85 16 LS Contribution 280.14 15.07 4.22 4.22 Total: -1.00 -29.01 280.14 -7.48 -36.50 By element: Atomic # 1 Polarization: 8.64 SS G_CDS: -5.28 Total: 3.36 kcal Atomic # 6 Polarization: -32.79 SS G_CDS: -2.91 Total: -35.70 kcal Atomic # 7 Polarization: -26.65 SS G_CDS: 0.77 Total: -25.88 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.29 Total: 17.50 kcal Total LS contribution 4.22 Total: 4.22 kcal Total: -29.01 -7.48 -36.50 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260246037.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.479 kcal (2) G-P(sol) polarization free energy of solvation -29.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.498 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds