Wall clock time and date at job start Mon Mar 30 2020 03:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38258 * 119.99704 * 2 1 4 4 C 1.38219 * 119.99915 * 179.97438 * 3 2 1 5 5 C 1.50697 * 120.00140 * 180.02562 * 4 3 2 6 6 C 1.38262 * 119.99766 * 0.28042 * 4 3 2 7 7 C 1.50703 * 119.99772 * 179.72318 * 6 4 3 8 8 C 1.38216 * 119.99851 * 359.52418 * 6 4 3 9 9 C 1.50698 * 119.99672 * 180.21296 * 8 6 4 10 10 C 1.50699 * 115.55062 * 40.79989 * 9 8 6 11 11 H 1.08003 * 120.00044 * 265.50183 * 10 9 8 12 12 C 1.37878 * 120.00129 * 85.50748 * 10 9 8 13 13 N 1.31512 * 120.00207 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 119.99768 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46917 * 88.72522 * 14 12 10 16 16 H 1.48500 * 109.47393 * 208.72251 * 14 12 10 17 17 H 1.48498 * 109.47289 * 328.72660 * 14 12 10 18 18 C 1.53002 * 117.49894 * 255.09141 * 9 8 6 19 19 C 1.53000 * 117.49810 * 186.46967 * 9 8 6 20 20 C 1.38213 * 120.00381 * 180.02562 * 2 1 3 21 21 H 1.09001 * 109.46964 * 90.00606 * 1 2 3 22 22 H 1.09004 * 109.46957 * 210.00136 * 1 2 3 23 23 H 1.08995 * 109.46983 * 330.00435 * 1 2 3 24 24 H 1.07995 * 120.00337 * 359.97438 * 3 2 1 25 25 H 1.08997 * 109.47201 * 89.99838 * 5 4 3 26 26 H 1.09000 * 109.47176 * 210.00426 * 5 4 3 27 27 H 1.09007 * 109.47059 * 330.00003 * 5 4 3 28 28 H 1.08995 * 109.46917 * 96.56557 * 7 6 4 29 29 H 1.08996 * 109.46913 * 216.56378 * 7 6 4 30 30 H 1.09003 * 109.46749 * 336.56032 * 7 6 4 31 31 H 0.96997 * 120.00123 * 179.97438 * 13 12 10 32 32 H 1.09004 * 117.50133 * 0.02562 * 18 9 8 33 33 H 1.09004 * 117.49945 * 145.02163 * 18 9 8 34 34 H 1.09006 * 117.49976 * 214.98044 * 19 9 8 35 35 H 1.08996 * 117.49707 * 0.02562 * 19 9 8 36 36 H 1.08002 * 120.00035 * 0.02562 * 20 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.3339 2.5025 0.0011 6 6 4.2717 0.0001 -0.0048 7 6 5.7788 0.0001 -0.0105 8 6 3.5807 -1.1969 -0.0007 9 6 4.3342 -2.5020 -0.0017 10 6 5.5537 -2.5490 0.8824 11 1 6.5281 -2.3315 0.4705 12 6 5.4256 -2.8699 2.2172 13 7 6.4899 -2.9114 2.9887 14 14 3.7402 -3.2456 2.9299 15 1 3.4520 -4.6948 2.7816 16 1 3.7190 -2.8815 4.3694 17 1 2.7098 -2.4593 2.2052 18 6 4.3804 -3.2901 -1.3122 19 6 3.5191 -3.7882 -0.1499 20 6 2.1982 -1.1969 -0.0005 21 1 -0.3633 -0.0001 -1.0277 22 1 -0.3633 -0.8900 0.5139 23 1 -0.3633 0.8900 0.5137 24 1 1.6583 2.1327 -0.0004 25 1 4.5151 2.8170 1.0289 26 1 5.2865 2.3723 -0.5124 27 1 3.7450 3.2623 -0.5128 28 1 6.1459 -0.1196 1.0087 29 1 6.1397 -0.8239 -0.6259 30 1 6.1404 0.9440 -0.4186 31 1 6.3997 -3.1368 3.9278 32 1 3.8661 -2.8645 -2.1739 33 1 5.2931 -3.8428 -1.5353 34 1 3.8651 -4.6687 0.3917 35 1 2.4379 -3.6905 -0.2472 36 1 1.6582 -2.1323 -0.0014 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260246037.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:16 Heat of formation + Delta-G solvation = 20.914761 kcal Electronic energy + Delta-G solvation = -16371.339924 eV Core-core repulsion = 14012.956429 eV Total energy + Delta-G solvation = -2358.383495 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.93514 -38.09719 -35.11914 -34.18707 -32.46893 -30.09188 -28.00343 -27.67600 -25.59212 -23.78989 -23.14913 -20.79493 -20.36236 -18.50030 -16.83254 -16.73447 -16.34350 -15.62547 -15.13820 -14.86721 -14.75861 -14.18869 -14.04190 -13.64212 -13.52073 -13.45472 -13.16420 -12.95050 -12.76224 -12.47909 -12.37687 -12.17086 -11.97765 -11.62134 -11.54576 -11.36919 -11.08265 -10.68658 -10.40286 -9.18944 -8.96454 -8.25751 -6.27941 0.61689 0.65915 1.31463 1.37433 1.52419 2.39746 2.86779 3.08813 3.37383 3.95020 4.04669 4.09483 4.29672 4.36242 4.43629 4.48432 4.58672 4.60297 4.78637 4.79426 4.85011 4.88065 4.93550 5.03956 5.07868 5.10877 5.20603 5.24336 5.35322 5.43800 5.51495 5.62620 5.71259 5.80372 5.87886 6.12985 6.36872 6.38765 6.76293 7.38469 8.87981 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.021931 B = 0.011951 C = 0.010385 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1276.441810 B = 2342.305981 C = 2695.639852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C -0.103 4.103 3 C -0.139 4.139 4 C -0.099 4.099 5 C -0.110 4.110 6 C -0.095 4.095 7 C -0.086 4.086 8 C -0.038 4.038 9 C 0.009 3.991 10 C -0.460 4.460 11 H 0.050 0.950 12 C 0.028 3.972 13 N -0.946 5.946 14 Si 0.917 3.083 15 H -0.272 1.272 16 H -0.307 1.307 17 H -0.232 1.232 18 C -0.155 4.155 19 C -0.196 4.196 20 C -0.149 4.149 21 H 0.081 0.919 22 H 0.062 0.938 23 H 0.078 0.922 24 H 0.143 0.857 25 H 0.068 0.932 26 H 0.071 0.929 27 H 0.084 0.916 28 H 0.045 0.955 29 H 0.053 0.947 30 H 0.069 0.931 31 H 0.262 0.738 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.075 0.925 35 H 0.098 0.902 36 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.949 7.909 -7.242 15.326 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.103 4.103 3 C -0.157 4.157 4 C -0.099 4.099 5 C -0.166 4.166 6 C -0.095 4.095 7 C -0.142 4.142 8 C -0.038 4.038 9 C 0.008 3.992 10 C -0.498 4.498 11 H 0.068 0.932 12 C -0.169 4.169 13 N -0.586 5.586 14 Si 0.744 3.256 15 H -0.197 1.197 16 H -0.235 1.235 17 H -0.154 1.154 18 C -0.192 4.192 19 C -0.233 4.233 20 C -0.167 4.167 21 H 0.100 0.900 22 H 0.081 0.919 23 H 0.097 0.903 24 H 0.161 0.839 25 H 0.087 0.913 26 H 0.089 0.911 27 H 0.103 0.897 28 H 0.063 0.937 29 H 0.072 0.928 30 H 0.088 0.912 31 H 0.071 0.929 32 H 0.114 0.886 33 H 0.103 0.897 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.890 7.877 -7.079 15.190 hybrid contribution -0.030 -0.783 0.958 1.238 sum -10.920 7.094 -6.120 14.389 Atomic orbital electron populations 1.20753 0.89208 1.03093 1.02997 1.20165 0.97426 0.92626 1.00074 1.21034 0.93103 0.98032 1.03488 1.20084 0.94442 0.95132 1.00292 1.20839 1.00222 0.92987 1.02537 1.19742 0.96449 0.92393 1.00907 1.20698 0.91596 1.00767 1.01117 1.19607 0.93049 0.94312 0.96830 1.18158 0.95809 0.87272 0.97956 1.20389 0.91765 1.44789 0.92834 0.93225 1.25575 0.99042 0.94896 0.97418 1.70005 1.30876 1.51320 1.06445 0.86163 0.83426 0.79483 0.76577 1.19733 1.23467 1.15427 1.22855 1.01113 1.03750 0.91493 1.23046 0.97443 0.98871 1.03914 1.21061 0.93493 0.98205 1.03954 0.90042 0.91918 0.90290 0.83924 0.91309 0.91051 0.89708 0.93664 0.92814 0.91245 0.92932 0.88606 0.89732 0.90653 0.88350 0.86510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.38 10.01 71.24 0.71 -1.66 16 2 C -0.10 -3.27 5.88 -19.87 -0.12 -3.39 16 3 C -0.14 -4.24 9.36 22.27 0.21 -4.03 16 4 C -0.10 -3.39 5.88 -19.86 -0.12 -3.50 16 5 C -0.11 -2.87 9.60 71.24 0.68 -2.19 16 6 C -0.09 -3.90 5.82 -19.86 -0.12 -4.02 16 7 C -0.09 -3.58 7.80 71.24 0.56 -3.02 16 8 C -0.04 -1.61 4.64 -19.87 -0.09 -1.70 16 9 C 0.01 0.41 0.68 -53.67 -0.04 0.37 16 10 C -0.46 -25.34 6.50 25.60 0.17 -25.17 16 11 H 0.05 3.00 6.82 -2.91 -0.02 2.98 16 12 C 0.03 1.62 5.47 84.66 0.46 2.08 16 13 N -0.95 -58.87 13.96 21.45 0.30 -58.58 16 14 Si 0.92 45.54 25.23 68.60 1.73 47.27 16 15 H -0.27 -12.99 7.11 99.48 0.71 -12.28 16 16 H -0.31 -15.61 7.11 99.48 0.71 -14.90 16 17 H -0.23 -10.80 5.39 99.48 0.54 -10.27 16 18 C -0.16 -6.16 9.94 30.60 0.30 -5.86 16 19 C -0.20 -8.07 7.29 30.59 0.22 -7.84 16 20 C -0.15 -5.63 7.91 22.27 0.18 -5.46 16 21 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 22 H 0.06 1.41 8.09 -2.39 -0.02 1.39 16 23 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 24 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 25 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 26 H 0.07 1.83 5.87 -2.39 -0.01 1.82 16 27 H 0.08 1.73 8.09 -2.38 -0.02 1.71 16 28 H 0.04 2.19 7.46 -2.39 -0.02 2.17 16 29 H 0.05 2.40 6.06 -2.39 -0.01 2.39 16 30 H 0.07 2.38 5.71 -2.39 -0.01 2.36 16 31 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 32 H 0.10 3.36 8.14 -2.39 -0.02 3.34 16 33 H 0.08 3.38 8.14 -2.39 -0.02 3.37 16 34 H 0.07 3.29 7.33 -2.38 -0.02 3.27 16 35 H 0.10 3.57 6.13 -2.39 -0.01 3.56 16 36 H 0.12 4.17 5.98 -2.91 -0.02 4.15 16 Total: -1.00 -64.72 280.14 5.94 -58.78 By element: Atomic # 1 Polarization: 17.04 SS G_CDS: 0.89 Total: 17.93 kcal Atomic # 6 Polarization: -68.42 SS G_CDS: 3.02 Total: -65.40 kcal Atomic # 7 Polarization: -58.87 SS G_CDS: 0.30 Total: -58.58 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.73 Total: 47.27 kcal Total: -64.72 5.94 -58.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260246037.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.693 kcal (2) G-P(sol) polarization free energy of solvation -64.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.978 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds