Wall clock time and date at job start Mon Mar 30 2020 03:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37986 * 119.73050 * 2 1 4 4 C 1.38216 * 119.77423 * 179.97438 * 3 2 1 5 5 C 1.37982 * 119.76983 * 0.13075 * 4 3 2 6 6 C 1.50699 * 119.72363 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.46967 * 264.98826 * 6 5 4 8 8 H 1.07996 * 119.99823 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99812 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00168 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99720 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47045 * 90.00121 * 11 9 7 13 13 H 1.48499 * 109.46942 * 209.99668 * 11 9 7 14 14 H 1.48493 * 109.47178 * 330.00022 * 11 9 7 15 15 C 1.38865 * 120.54471 * 359.97087 * 5 4 3 16 16 C 1.37706 * 119.68220 * 359.79169 * 15 5 4 17 17 C 1.50624 * 122.55859 * 180.68006 * 16 15 5 18 18 C 1.52739 * 110.57407 * 342.15127 * 17 16 15 19 19 C 1.53327 * 108.37019 * 51.17432 * 18 17 16 20 20 C 1.50636 * 117.75415 * 179.74608 * 15 5 4 21 21 H 1.09002 * 109.46937 * 270.01946 * 1 2 3 22 22 H 1.08998 * 109.47299 * 30.01890 * 1 2 3 23 23 H 1.08998 * 109.47273 * 150.02137 * 1 2 3 24 24 H 1.08005 * 120.10812 * 359.96451 * 3 2 1 25 25 H 1.08000 * 120.11252 * 180.12985 * 4 3 2 26 26 H 1.08999 * 109.47643 * 24.98357 * 6 5 4 27 27 H 1.08997 * 109.47092 * 144.98996 * 6 5 4 28 28 H 0.96998 * 120.00594 * 180.02562 * 10 9 7 29 29 H 1.08999 * 109.26169 * 102.43232 * 17 16 15 30 30 H 1.09002 * 109.25630 * 221.86953 * 17 16 15 31 31 H 1.09002 * 109.68449 * 170.88925 * 18 17 16 32 32 H 1.08998 * 109.68659 * 291.44410 * 18 17 16 33 33 H 1.09005 * 109.68196 * 170.38714 * 19 18 17 34 34 H 1.08998 * 109.68395 * 49.84144 * 19 18 17 35 35 H 1.08991 * 109.25075 * 282.61515 * 20 15 5 36 36 H 1.08997 * 109.25314 * 42.04374 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1913 1.1982 0.0000 4 6 3.5734 1.1993 0.0005 5 6 4.2595 0.0021 -0.0017 6 6 5.7664 0.0045 -0.0017 7 6 6.2689 -0.1163 -1.4173 8 1 5.5672 -0.1880 -2.2351 9 6 7.6246 -0.1362 -1.6683 10 7 8.4790 -0.0494 -0.6724 11 14 8.2474 -0.2866 -3.4230 12 1 8.4108 1.0684 -4.0081 13 1 9.5565 -0.9877 -3.4252 14 1 7.2703 -1.0600 -4.2305 15 6 3.5727 -1.2048 -0.0038 16 6 2.1956 -1.2058 0.0006 17 6 1.3860 -2.4759 0.0137 18 6 2.2438 -3.6638 -0.4175 19 6 3.5278 -3.6621 0.4205 20 6 4.3843 -2.4738 -0.0121 21 1 -0.3633 0.0003 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3634 -0.8902 -0.5135 24 1 1.6486 2.1321 -0.0006 25 1 4.1146 2.1339 0.0027 26 1 6.1284 0.9357 0.4341 27 1 6.1311 -0.8377 0.5864 28 1 9.4327 -0.0631 -0.8489 29 1 1.0091 -2.6517 1.0213 30 1 0.5444 -2.3728 -0.6713 31 1 1.6970 -4.5917 -0.2496 32 1 2.4947 -3.5711 -1.4742 33 1 4.0760 -4.5895 0.2542 34 1 3.2765 -3.5682 1.4770 35 1 4.7633 -2.6514 -1.0184 36 1 5.2244 -2.3676 0.6742 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260269986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:14 Heat of formation + Delta-G solvation = -13.122501 kcal Electronic energy + Delta-G solvation = -15982.238738 eV Core-core repulsion = 13622.379276 eV Total energy + Delta-G solvation = -2359.859462 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.27 seconds Orbital eigenvalues (eV) -39.66712 -35.64652 -34.40407 -32.37072 -29.68913 -29.25192 -28.66195 -25.28577 -23.18482 -22.48491 -22.20499 -19.18475 -18.81951 -16.31800 -15.59542 -14.99413 -14.85202 -14.33851 -13.75448 -13.39960 -13.28807 -12.99206 -12.48745 -12.34775 -12.13695 -11.87839 -11.74200 -11.28843 -11.20989 -10.97028 -10.70846 -10.59039 -10.50846 -10.36622 -10.04983 -9.70475 -9.41782 -9.25054 -8.39176 -7.83117 -7.48563 -6.02133 -4.05223 2.11297 2.15485 3.30737 3.37141 3.41243 4.37992 4.54971 5.06805 5.14562 5.22664 5.32318 5.43453 5.45871 5.65337 5.74188 5.77725 5.83412 5.92080 5.96251 6.03120 6.09266 6.19524 6.29986 6.37925 6.45025 6.53931 6.61123 6.76416 6.89581 6.97854 7.22623 7.26325 7.38667 7.56257 7.85046 7.92752 7.94574 8.36016 8.99816 9.58034 11.07578 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.027061 B = 0.008164 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.437540 B = 3428.993774 C = 3951.790269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.121 4.121 3 C -0.126 4.126 4 C -0.127 4.127 5 C -0.041 4.041 6 C 0.047 3.953 7 C -0.505 4.505 8 H 0.055 0.945 9 C 0.059 3.941 10 N -0.895 5.895 11 Si 0.892 3.108 12 H -0.280 1.280 13 H -0.286 1.286 14 H -0.274 1.274 15 C -0.072 4.072 16 C -0.085 4.085 17 C -0.074 4.074 18 C -0.119 4.119 19 C -0.119 4.119 20 C -0.075 4.075 21 H 0.059 0.941 22 H 0.056 0.944 23 H 0.062 0.938 24 H 0.108 0.892 25 H 0.115 0.885 26 H 0.024 0.976 27 H 0.033 0.967 28 H 0.261 0.739 29 H 0.066 0.934 30 H 0.068 0.932 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.080 0.920 36 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.991 -3.980 2.022 13.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.121 4.121 3 C -0.144 4.144 4 C -0.145 4.145 5 C -0.042 4.042 6 C 0.010 3.990 7 C -0.543 4.543 8 H 0.074 0.926 9 C -0.143 4.143 10 N -0.534 5.534 11 Si 0.720 3.280 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.198 1.198 15 C -0.072 4.072 16 C -0.085 4.085 17 C -0.111 4.111 18 C -0.157 4.157 19 C -0.157 4.157 20 C -0.112 4.112 21 H 0.078 0.922 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.126 0.874 25 H 0.133 0.867 26 H 0.043 0.957 27 H 0.051 0.949 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.077 0.923 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.077 0.923 35 H 0.098 0.902 36 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -12.803 -3.981 2.060 13.564 hybrid contribution 0.507 0.176 -1.004 1.139 sum -12.296 -3.805 1.056 12.914 Atomic orbital electron populations 1.20742 0.92463 1.01894 1.01297 1.19595 0.94982 0.92911 1.04630 1.20780 0.94409 0.96560 1.02623 1.20962 0.93476 0.98109 1.01920 1.20660 0.98816 0.91473 0.93203 1.18392 0.84667 0.98219 0.97673 1.21012 0.91257 1.50166 0.91891 0.92643 1.24988 0.96915 0.95350 0.97001 1.69950 1.02107 1.50611 1.30734 0.86588 0.78221 0.78234 0.85005 1.20655 1.21178 1.19837 1.19438 0.91983 0.95155 1.00644 1.19293 0.92954 0.93755 1.02498 1.20427 0.97313 0.92353 1.00990 1.21549 0.96536 0.97149 1.00419 1.21588 0.96189 0.98498 0.99409 1.20426 0.97111 0.90591 1.03066 0.92191 0.92466 0.91903 0.87362 0.86694 0.95742 0.94866 0.92906 0.91559 0.91362 0.92335 0.91737 0.92071 0.92315 0.90169 0.90188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.37 9.52 36.00 0.34 -1.03 16 2 C -0.12 -2.04 5.89 -104.49 -0.62 -2.65 16 3 C -0.13 -2.23 9.69 -39.68 -0.38 -2.62 16 4 C -0.13 -2.60 9.66 -39.68 -0.38 -2.98 16 5 C -0.04 -0.93 5.08 -104.48 -0.53 -1.46 16 6 C 0.05 1.22 4.55 -29.03 -0.13 1.09 16 7 C -0.50 -14.11 9.01 -34.44 -0.31 -14.42 16 8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 10 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16 11 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 15 C -0.07 -1.46 5.74 -104.62 -0.60 -2.06 16 16 C -0.08 -1.50 5.74 -104.62 -0.60 -2.10 16 17 C -0.07 -1.04 4.98 -28.05 -0.14 -1.18 16 18 C -0.12 -1.62 5.98 -26.70 -0.16 -1.78 16 19 C -0.12 -1.78 5.98 -26.70 -0.16 -1.94 16 20 C -0.08 -1.43 4.94 -28.05 -0.14 -1.57 16 21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 22 H 0.06 0.66 8.08 -51.93 -0.42 0.25 16 23 H 0.06 0.73 5.94 -51.93 -0.31 0.42 16 24 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16 25 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16 26 H 0.02 0.67 8.04 -51.93 -0.42 0.25 16 27 H 0.03 0.89 6.15 -51.93 -0.32 0.57 16 28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 30 H 0.07 0.86 6.27 -51.93 -0.33 0.53 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.06 0.85 8.10 -51.93 -0.42 0.42 16 35 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16 36 H 0.08 1.63 6.31 -51.93 -0.33 1.30 16 LS Contribution 286.20 15.07 4.31 4.31 Total: -1.00 -29.49 286.20 -9.34 -38.83 By element: Atomic # 1 Polarization: 4.53 SS G_CDS: -5.46 Total: -0.93 kcal Atomic # 6 Polarization: -29.25 SS G_CDS: -3.91 Total: -33.16 kcal Atomic # 7 Polarization: -26.39 SS G_CDS: 0.74 Total: -25.65 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.49 -9.34 -38.83 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260269986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.703 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.783 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.123 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds