Wall clock time and date at job start Mon Mar 30 2020 03:27:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
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* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
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Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50697 * 1
3 3 C 1.37986 * 119.73050 * 2 1
4 4 C 1.38216 * 119.77423 * 179.97438 * 3 2 1
5 5 C 1.37982 * 119.76983 * 0.13075 * 4 3 2
6 6 C 1.50699 * 119.72363 * 179.97438 * 5 4 3
7 7 C 1.50705 * 109.46967 * 264.98826 * 6 5 4
8 8 H 1.07996 * 119.99823 * 359.97438 * 7 6 5
9 9 C 1.37880 * 119.99812 * 180.02562 * 7 6 5
10 10 N 1.31507 * 120.00168 * 359.97438 * 9 7 6
11 11 Si 1.86804 * 119.99720 * 179.97438 * 9 7 6
12 12 H 1.48498 * 109.47045 * 90.00121 * 11 9 7
13 13 H 1.48499 * 109.46942 * 209.99668 * 11 9 7
14 14 H 1.48493 * 109.47178 * 330.00022 * 11 9 7
15 15 C 1.38865 * 120.54471 * 359.97087 * 5 4 3
16 16 C 1.37706 * 119.68220 * 359.79169 * 15 5 4
17 17 C 1.50624 * 122.55859 * 180.68006 * 16 15 5
18 18 C 1.52739 * 110.57407 * 342.15127 * 17 16 15
19 19 C 1.53327 * 108.37019 * 51.17432 * 18 17 16
20 20 C 1.50636 * 117.75415 * 179.74608 * 15 5 4
21 21 H 1.09002 * 109.46937 * 270.01946 * 1 2 3
22 22 H 1.08998 * 109.47299 * 30.01890 * 1 2 3
23 23 H 1.08998 * 109.47273 * 150.02137 * 1 2 3
24 24 H 1.08005 * 120.10812 * 359.96451 * 3 2 1
25 25 H 1.08000 * 120.11252 * 180.12985 * 4 3 2
26 26 H 1.08999 * 109.47643 * 24.98357 * 6 5 4
27 27 H 1.08997 * 109.47092 * 144.98996 * 6 5 4
28 28 H 0.96998 * 120.00594 * 180.02562 * 10 9 7
29 29 H 1.08999 * 109.26169 * 102.43232 * 17 16 15
30 30 H 1.09002 * 109.25630 * 221.86953 * 17 16 15
31 31 H 1.09002 * 109.68449 * 170.88925 * 18 17 16
32 32 H 1.08998 * 109.68659 * 291.44410 * 18 17 16
33 33 H 1.09005 * 109.68196 * 170.38714 * 19 18 17
34 34 H 1.08998 * 109.68395 * 49.84144 * 19 18 17
35 35 H 1.08991 * 109.25075 * 282.61515 * 20 15 5
36 36 H 1.08997 * 109.25314 * 42.04374 * 20 15 5
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5070 0.0000 0.0000
3 6 2.1913 1.1982 0.0000
4 6 3.5734 1.1993 0.0005
5 6 4.2595 0.0021 -0.0017
6 6 5.7664 0.0045 -0.0017
7 6 6.2689 -0.1163 -1.4173
8 1 5.5672 -0.1880 -2.2351
9 6 7.6246 -0.1362 -1.6683
10 7 8.4790 -0.0494 -0.6724
11 14 8.2474 -0.2866 -3.4230
12 1 8.4108 1.0684 -4.0081
13 1 9.5565 -0.9877 -3.4252
14 1 7.2703 -1.0600 -4.2305
15 6 3.5727 -1.2048 -0.0038
16 6 2.1956 -1.2058 0.0006
17 6 1.3860 -2.4759 0.0137
18 6 2.2438 -3.6638 -0.4175
19 6 3.5278 -3.6621 0.4205
20 6 4.3843 -2.4738 -0.0121
21 1 -0.3633 0.0003 1.0277
22 1 -0.3634 0.8898 -0.5141
23 1 -0.3634 -0.8902 -0.5135
24 1 1.6486 2.1321 -0.0006
25 1 4.1146 2.1339 0.0027
26 1 6.1284 0.9357 0.4341
27 1 6.1311 -0.8377 0.5864
28 1 9.4327 -0.0631 -0.8489
29 1 1.0091 -2.6517 1.0213
30 1 0.5444 -2.3728 -0.6713
31 1 1.6970 -4.5917 -0.2496
32 1 2.4947 -3.5711 -1.4742
33 1 4.0760 -4.5895 0.2542
34 1 3.2765 -3.5682 1.4770
35 1 4.7633 -2.6514 -1.0184
36 1 5.2244 -2.3676 0.6742
RHF calculation, no. of doubly occupied orbitals= 43
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000260269986.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 03:27:14
Heat of formation + Delta-G solvation = -13.122501 kcal
Electronic energy + Delta-G solvation = -15982.238738 eV
Core-core repulsion = 13622.379276 eV
Total energy + Delta-G solvation = -2359.859462 eV
No. of doubly occupied orbitals = 43
Molecular weight
(most abundant/longest-lived isotopes) = 230.137 amu
Computer time = 0.27 seconds
Orbital eigenvalues (eV)
-39.66712 -35.64652 -34.40407 -32.37072 -29.68913 -29.25192 -28.66195 -25.28577
-23.18482 -22.48491 -22.20499 -19.18475 -18.81951 -16.31800 -15.59542 -14.99413
-14.85202 -14.33851 -13.75448 -13.39960 -13.28807 -12.99206 -12.48745 -12.34775
-12.13695 -11.87839 -11.74200 -11.28843 -11.20989 -10.97028 -10.70846 -10.59039
-10.50846 -10.36622 -10.04983 -9.70475 -9.41782 -9.25054 -8.39176 -7.83117
-7.48563 -6.02133 -4.05223 2.11297 2.15485 3.30737 3.37141 3.41243
4.37992 4.54971 5.06805 5.14562 5.22664 5.32318 5.43453 5.45871
5.65337 5.74188 5.77725 5.83412 5.92080 5.96251 6.03120 6.09266
6.19524 6.29986 6.37925 6.45025 6.53931 6.61123 6.76416 6.89581
6.97854 7.22623 7.26325 7.38667 7.56257 7.85046 7.92752 7.94574
8.36016 8.99816 9.58034 11.07578
Molecular weight = 230.14amu
Principal moments of inertia in cm(-1)
A = 0.027061 B = 0.008164 C = 0.007084
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1034.437540 B = 3428.993774 C = 3951.790269
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.107 4.107
2 C -0.121 4.121
3 C -0.126 4.126
4 C -0.127 4.127
5 C -0.041 4.041
6 C 0.047 3.953
7 C -0.505 4.505
8 H 0.055 0.945
9 C 0.059 3.941
10 N -0.895 5.895
11 Si 0.892 3.108
12 H -0.280 1.280
13 H -0.286 1.286
14 H -0.274 1.274
15 C -0.072 4.072
16 C -0.085 4.085
17 C -0.074 4.074
18 C -0.119 4.119
19 C -0.119 4.119
20 C -0.075 4.075
21 H 0.059 0.941
22 H 0.056 0.944
23 H 0.062 0.938
24 H 0.108 0.892
25 H 0.115 0.885
26 H 0.024 0.976
27 H 0.033 0.967
28 H 0.261 0.739
29 H 0.066 0.934
30 H 0.068 0.932
31 H 0.058 0.942
32 H 0.064 0.936
33 H 0.061 0.939
34 H 0.058 0.942
35 H 0.080 0.920
36 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -12.991 -3.980 2.022 13.736
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.164 4.164
2 C -0.121 4.121
3 C -0.144 4.144
4 C -0.145 4.145
5 C -0.042 4.042
6 C 0.010 3.990
7 C -0.543 4.543
8 H 0.074 0.926
9 C -0.143 4.143
10 N -0.534 5.534
11 Si 0.720 3.280
12 H -0.207 1.207
13 H -0.212 1.212
14 H -0.198 1.198
15 C -0.072 4.072
16 C -0.085 4.085
17 C -0.111 4.111
18 C -0.157 4.157
19 C -0.157 4.157
20 C -0.112 4.112
21 H 0.078 0.922
22 H 0.075 0.925
23 H 0.081 0.919
24 H 0.126 0.874
25 H 0.133 0.867
26 H 0.043 0.957
27 H 0.051 0.949
28 H 0.071 0.929
29 H 0.084 0.916
30 H 0.086 0.914
31 H 0.077 0.923
32 H 0.083 0.917
33 H 0.079 0.921
34 H 0.077 0.923
35 H 0.098 0.902
36 H 0.098 0.902
Dipole moment (debyes) X Y Z Total
from point charges -12.803 -3.981 2.060 13.564
hybrid contribution 0.507 0.176 -1.004 1.139
sum -12.296 -3.805 1.056 12.914
Atomic orbital electron populations
1.20742 0.92463 1.01894 1.01297 1.19595 0.94982 0.92911 1.04630
1.20780 0.94409 0.96560 1.02623 1.20962 0.93476 0.98109 1.01920
1.20660 0.98816 0.91473 0.93203 1.18392 0.84667 0.98219 0.97673
1.21012 0.91257 1.50166 0.91891 0.92643 1.24988 0.96915 0.95350
0.97001 1.69950 1.02107 1.50611 1.30734 0.86588 0.78221 0.78234
0.85005 1.20655 1.21178 1.19837 1.19438 0.91983 0.95155 1.00644
1.19293 0.92954 0.93755 1.02498 1.20427 0.97313 0.92353 1.00990
1.21549 0.96536 0.97149 1.00419 1.21588 0.96189 0.98498 0.99409
1.20426 0.97111 0.90591 1.03066 0.92191 0.92466 0.91903 0.87362
0.86694 0.95742 0.94866 0.92906 0.91559 0.91362 0.92335 0.91737
0.92071 0.92315 0.90169 0.90188
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 12.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.11 -1.37 9.52 36.00 0.34 -1.03 16
2 C -0.12 -2.04 5.89 -104.49 -0.62 -2.65 16
3 C -0.13 -2.23 9.69 -39.68 -0.38 -2.62 16
4 C -0.13 -2.60 9.66 -39.68 -0.38 -2.98 16
5 C -0.04 -0.93 5.08 -104.48 -0.53 -1.46 16
6 C 0.05 1.22 4.55 -29.03 -0.13 1.09 16
7 C -0.50 -14.11 9.01 -34.44 -0.31 -14.42 16
8 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16
9 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16
10 N -0.89 -26.39 13.29 55.43 0.74 -25.65 16
11 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16
12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16
13 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16
14 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16
15 C -0.07 -1.46 5.74 -104.62 -0.60 -2.06 16
16 C -0.08 -1.50 5.74 -104.62 -0.60 -2.10 16
17 C -0.07 -1.04 4.98 -28.05 -0.14 -1.18 16
18 C -0.12 -1.62 5.98 -26.70 -0.16 -1.78 16
19 C -0.12 -1.78 5.98 -26.70 -0.16 -1.94 16
20 C -0.08 -1.43 4.94 -28.05 -0.14 -1.57 16
21 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16
22 H 0.06 0.66 8.08 -51.93 -0.42 0.25 16
23 H 0.06 0.73 5.94 -51.93 -0.31 0.42 16
24 H 0.11 1.63 8.06 -52.48 -0.42 1.21 16
25 H 0.12 2.29 8.06 -52.49 -0.42 1.86 16
26 H 0.02 0.67 8.04 -51.93 -0.42 0.25 16
27 H 0.03 0.89 6.15 -51.93 -0.32 0.57 16
28 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16
29 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16
30 H 0.07 0.86 6.27 -51.93 -0.33 0.53 16
31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16
32 H 0.06 0.93 8.10 -51.93 -0.42 0.51 16
33 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16
34 H 0.06 0.85 8.10 -51.93 -0.42 0.42 16
35 H 0.08 1.64 8.14 -51.93 -0.42 1.22 16
36 H 0.08 1.63 6.31 -51.93 -0.33 1.30 16
LS Contribution 286.20 15.07 4.31 4.31
Total: -1.00 -29.49 286.20 -9.34 -38.83
By element:
Atomic # 1 Polarization: 4.53 SS G_CDS: -5.46 Total: -0.93 kcal
Atomic # 6 Polarization: -29.25 SS G_CDS: -3.91 Total: -33.16 kcal
Atomic # 7 Polarization: -26.39 SS G_CDS: 0.74 Total: -25.65 kcal
Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal
Total LS contribution 4.31 Total: 4.31 kcal
Total: -29.49 -9.34 -38.83 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000260269986.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 25.703 kcal
(2) G-P(sol) polarization free energy of solvation -29.486 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.783 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.340 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal
(6) G-S(sol) free energy of system = (1) + (5) -13.123 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.27 seconds