Wall clock time and date at job start Mon Mar 30 2020 03:27:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.37986 * 119.73050 * 2 1 4 4 C 1.38216 * 119.77423 * 179.97438 * 3 2 1 5 5 C 1.37982 * 119.76983 * 0.13075 * 4 3 2 6 6 C 1.50699 * 119.72363 * 179.97438 * 5 4 3 7 7 C 1.50705 * 109.46967 * 264.98826 * 6 5 4 8 8 H 1.07996 * 119.99823 * 359.97438 * 7 6 5 9 9 C 1.37880 * 119.99812 * 180.02562 * 7 6 5 10 10 N 1.31507 * 120.00168 * 359.97438 * 9 7 6 11 11 Si 1.86804 * 119.99720 * 179.97438 * 9 7 6 12 12 H 1.48498 * 109.47045 * 90.00121 * 11 9 7 13 13 H 1.48499 * 109.46942 * 209.99668 * 11 9 7 14 14 H 1.48493 * 109.47178 * 330.00022 * 11 9 7 15 15 C 1.38865 * 120.54471 * 359.97087 * 5 4 3 16 16 C 1.37706 * 119.68220 * 359.79169 * 15 5 4 17 17 C 1.50624 * 122.55859 * 180.68006 * 16 15 5 18 18 C 1.52739 * 110.57407 * 342.15127 * 17 16 15 19 19 C 1.53327 * 108.37019 * 51.17432 * 18 17 16 20 20 C 1.50636 * 117.75415 * 179.74608 * 15 5 4 21 21 H 1.09002 * 109.46937 * 270.01946 * 1 2 3 22 22 H 1.08998 * 109.47299 * 30.01890 * 1 2 3 23 23 H 1.08998 * 109.47273 * 150.02137 * 1 2 3 24 24 H 1.08005 * 120.10812 * 359.96451 * 3 2 1 25 25 H 1.08000 * 120.11252 * 180.12985 * 4 3 2 26 26 H 1.08999 * 109.47643 * 24.98357 * 6 5 4 27 27 H 1.08997 * 109.47092 * 144.98996 * 6 5 4 28 28 H 0.96998 * 120.00594 * 180.02562 * 10 9 7 29 29 H 1.08999 * 109.26169 * 102.43232 * 17 16 15 30 30 H 1.09002 * 109.25630 * 221.86953 * 17 16 15 31 31 H 1.09002 * 109.68449 * 170.88925 * 18 17 16 32 32 H 1.08998 * 109.68659 * 291.44410 * 18 17 16 33 33 H 1.09005 * 109.68196 * 170.38714 * 19 18 17 34 34 H 1.08998 * 109.68395 * 49.84144 * 19 18 17 35 35 H 1.08991 * 109.25075 * 282.61515 * 20 15 5 36 36 H 1.08997 * 109.25314 * 42.04374 * 20 15 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1913 1.1982 0.0000 4 6 3.5734 1.1993 0.0005 5 6 4.2595 0.0021 -0.0017 6 6 5.7664 0.0045 -0.0017 7 6 6.2689 -0.1163 -1.4173 8 1 5.5672 -0.1880 -2.2351 9 6 7.6246 -0.1362 -1.6683 10 7 8.4790 -0.0494 -0.6724 11 14 8.2474 -0.2866 -3.4230 12 1 8.4108 1.0684 -4.0081 13 1 9.5565 -0.9877 -3.4252 14 1 7.2703 -1.0600 -4.2305 15 6 3.5727 -1.2048 -0.0038 16 6 2.1956 -1.2058 0.0006 17 6 1.3860 -2.4759 0.0137 18 6 2.2438 -3.6638 -0.4175 19 6 3.5278 -3.6621 0.4205 20 6 4.3843 -2.4738 -0.0121 21 1 -0.3633 0.0003 1.0277 22 1 -0.3634 0.8898 -0.5141 23 1 -0.3634 -0.8902 -0.5135 24 1 1.6486 2.1321 -0.0006 25 1 4.1146 2.1339 0.0027 26 1 6.1284 0.9357 0.4341 27 1 6.1311 -0.8377 0.5864 28 1 9.4327 -0.0631 -0.8489 29 1 1.0091 -2.6517 1.0213 30 1 0.5444 -2.3728 -0.6713 31 1 1.6970 -4.5917 -0.2496 32 1 2.4947 -3.5711 -1.4742 33 1 4.0760 -4.5895 0.2542 34 1 3.2765 -3.5682 1.4770 35 1 4.7633 -2.6514 -1.0184 36 1 5.2244 -2.3676 0.6742 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260269986.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:27:14 Heat of formation + Delta-G solvation = -27.550112 kcal Electronic energy + Delta-G solvation = -15982.864366 eV Core-core repulsion = 13622.379276 eV Total energy + Delta-G solvation = -2360.485090 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.09085 -36.96657 -36.09574 -34.30759 -31.09937 -30.63208 -30.28107 -27.00313 -24.51271 -24.32132 -23.53609 -20.70466 -20.12519 -18.53814 -17.06836 -16.64161 -16.22054 -16.03751 -15.00428 -14.78233 -14.67366 -14.32771 -14.19061 -13.91585 -13.60939 -13.19910 -13.11886 -12.98704 -12.83850 -12.55088 -12.36910 -12.18016 -12.02552 -11.72849 -11.64589 -11.42333 -11.03854 -10.89732 -10.59635 -9.28765 -9.05986 -8.20391 -6.33539 0.62703 0.65331 1.35997 1.36871 1.48425 2.37292 2.97948 3.09043 3.86430 3.88866 4.09025 4.16919 4.24379 4.35394 4.44355 4.54108 4.63251 4.66819 4.75344 4.90289 4.95986 5.02607 5.04724 5.13218 5.15069 5.19242 5.26732 5.29569 5.36815 5.49491 5.52639 5.56581 5.71727 5.81714 5.89347 6.15384 6.17181 6.38577 6.77856 7.34049 8.88258 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.027061 B = 0.008164 C = 0.007084 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1034.437540 B = 3428.993774 C = 3951.790269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.115 4.115 3 C -0.125 4.125 4 C -0.146 4.146 5 C -0.081 4.081 6 C 0.060 3.940 7 C -0.518 4.518 8 H 0.047 0.953 9 C 0.006 3.994 10 N -0.930 5.930 11 Si 0.961 3.039 12 H -0.273 1.273 13 H -0.277 1.277 14 H -0.267 1.267 15 C -0.090 4.090 16 C -0.088 4.088 17 C -0.073 4.073 18 C -0.116 4.116 19 C -0.113 4.113 20 C -0.072 4.072 21 H 0.079 0.921 22 H 0.071 0.929 23 H 0.081 0.919 24 H 0.139 0.861 25 H 0.106 0.894 26 H -0.008 1.008 27 H 0.010 0.990 28 H 0.265 0.735 29 H 0.088 0.912 30 H 0.093 0.907 31 H 0.094 0.906 32 H 0.052 0.948 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.054 0.946 36 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.227 -5.028 1.194 17.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.115 4.115 3 C -0.143 4.143 4 C -0.164 4.164 5 C -0.081 4.081 6 C 0.023 3.977 7 C -0.556 4.556 8 H 0.066 0.934 9 C -0.192 4.192 10 N -0.570 5.570 11 Si 0.786 3.214 12 H -0.198 1.198 13 H -0.202 1.202 14 H -0.191 1.191 15 C -0.090 4.090 16 C -0.088 4.088 17 C -0.109 4.109 18 C -0.153 4.153 19 C -0.151 4.151 20 C -0.109 4.109 21 H 0.097 0.903 22 H 0.090 0.910 23 H 0.099 0.901 24 H 0.157 0.843 25 H 0.124 0.876 26 H 0.010 0.990 27 H 0.028 0.972 28 H 0.074 0.926 29 H 0.106 0.894 30 H 0.112 0.888 31 H 0.112 0.888 32 H 0.071 0.929 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -16.050 -5.027 1.235 16.865 hybrid contribution 1.460 0.536 -0.690 1.701 sum -14.591 -4.492 0.545 15.276 Atomic orbital electron populations 1.20829 0.88648 1.03608 1.03008 1.20186 0.97661 0.91944 1.01707 1.21107 0.93027 0.98682 1.01511 1.21020 0.95233 0.97031 1.03158 1.20471 0.96743 0.93692 0.97163 1.18090 0.87894 0.95363 0.96306 1.21237 0.91599 1.50128 0.92593 0.93443 1.25879 0.97037 0.94775 1.01522 1.70074 1.02500 1.51395 1.33076 0.85503 0.77824 0.78570 0.79548 1.19804 1.20219 1.19115 1.19616 0.93646 0.94331 1.01434 1.19784 0.91965 0.96331 1.00686 1.20552 0.97264 0.90169 1.02920 1.21561 0.95738 0.98799 0.99226 1.21566 0.96598 0.96758 1.00151 1.20335 0.97129 0.92611 1.00863 0.90262 0.90995 0.90067 0.84290 0.87612 0.98970 0.97183 0.92597 0.89403 0.88845 0.88765 0.92912 0.90741 0.91464 0.92738 0.93199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -2.12 9.52 71.23 0.68 -1.44 16 2 C -0.11 -3.53 5.89 -19.78 -0.12 -3.64 16 3 C -0.13 -4.27 9.69 22.20 0.22 -4.06 16 4 C -0.15 -6.23 9.66 22.20 0.21 -6.01 16 5 C -0.08 -3.85 5.08 -19.78 -0.10 -3.95 16 6 C 0.06 3.39 4.55 29.10 0.13 3.52 16 7 C -0.52 -30.61 9.01 25.60 0.23 -30.37 16 8 H 0.05 2.81 7.74 -2.91 -0.02 2.79 16 9 C 0.01 0.34 5.46 84.66 0.46 0.80 16 10 N -0.93 -57.32 13.29 21.45 0.28 -57.04 16 11 Si 0.96 45.45 29.54 68.60 2.03 47.47 16 12 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 14 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 15 C -0.09 -3.75 5.74 -19.86 -0.11 -3.86 16 16 C -0.09 -2.93 5.74 -19.86 -0.11 -3.04 16 17 C -0.07 -1.73 4.98 29.74 0.15 -1.58 16 18 C -0.12 -2.77 5.98 30.62 0.18 -2.59 16 19 C -0.11 -3.25 5.98 30.62 0.18 -3.07 16 20 C -0.07 -2.89 4.94 29.74 0.15 -2.74 16 21 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.07 1.29 8.08 -2.39 -0.02 1.27 16 23 H 0.08 1.39 5.94 -2.39 -0.01 1.37 16 24 H 0.14 3.80 8.06 -2.91 -0.02 3.77 16 25 H 0.11 4.50 8.06 -2.91 -0.02 4.48 16 26 H -0.01 -0.49 8.04 -2.39 -0.02 -0.51 16 27 H 0.01 0.60 6.15 -2.39 -0.01 0.58 16 28 H 0.27 15.29 8.31 -92.71 -0.77 14.52 16 29 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.09 1.82 6.27 -2.39 -0.01 1.80 16 31 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 32 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 33 H 0.07 1.91 8.14 -2.38 -0.02 1.90 16 34 H 0.07 1.82 8.10 -2.39 -0.02 1.80 16 35 H 0.05 2.38 8.14 -2.39 -0.02 2.36 16 36 H 0.05 2.22 6.31 -2.39 -0.02 2.21 16 Total: -1.00 -67.84 286.20 5.51 -62.33 By element: Atomic # 1 Polarization: 8.22 SS G_CDS: 1.05 Total: 9.27 kcal Atomic # 6 Polarization: -64.18 SS G_CDS: 2.15 Total: -62.03 kcal Atomic # 7 Polarization: -57.32 SS G_CDS: 0.28 Total: -57.04 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.47 kcal Total: -67.84 5.51 -62.33 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260269986.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.778 kcal (2) G-P(sol) polarization free energy of solvation -67.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.550 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds