Wall clock time and date at job start Mon Mar 30 2020 03:08:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00155 * 2 1 4 4 C 1.46897 * 111.00253 * 123.95844 * 2 1 3 5 5 C 1.53003 * 109.47309 * 66.04095 * 4 2 1 6 6 H 1.09005 * 109.69621 * 300.34833 * 5 4 2 7 7 C 1.53234 * 109.58401 * 180.02562 * 5 4 2 8 8 N 1.46378 * 109.48791 * 182.55002 * 7 5 4 9 9 C 1.36933 * 119.65008 * 245.06566 * 8 7 5 10 10 H 1.08005 * 119.99898 * 331.61930 * 9 8 7 11 11 C 1.38809 * 120.00280 * 151.61871 * 9 8 7 12 12 N 1.31625 * 119.99868 * 341.15756 * 11 9 8 13 13 Si 1.86799 * 120.00009 * 161.15324 * 11 9 8 14 14 H 1.48495 * 109.47017 * 60.00356 * 13 11 9 15 15 H 1.48508 * 109.46948 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47444 * 300.00195 * 13 11 9 17 17 C 1.46379 * 120.70616 * 65.09068 * 8 7 5 18 18 C 1.53249 * 109.48211 * 294.91437 * 17 8 7 19 19 S 1.81729 * 108.80365 * 57.65620 * 18 17 8 20 20 H 1.08997 * 109.46779 * 296.04291 * 1 2 3 21 21 H 1.08999 * 109.46701 * 56.04210 * 1 2 3 22 22 H 1.08999 * 109.47387 * 176.04211 * 1 2 3 23 23 H 1.09000 * 109.47228 * 183.95711 * 3 2 1 24 24 H 1.08999 * 109.47098 * 303.95433 * 3 2 1 25 25 H 1.08996 * 109.46947 * 63.95400 * 3 2 1 26 26 H 1.09002 * 109.46548 * 306.04618 * 4 2 1 27 27 H 1.08992 * 109.47572 * 186.04580 * 4 2 1 28 28 H 1.09002 * 109.46766 * 62.54467 * 7 5 4 29 29 H 1.08997 * 109.46959 * 302.55587 * 7 5 4 30 30 H 0.96996 * 119.99987 * 180.02562 * 12 11 9 31 31 H 1.08998 * 109.47268 * 54.91338 * 17 8 7 32 32 H 1.08998 * 109.47193 * 174.91183 * 17 8 7 33 33 H 1.09004 * 109.58154 * 177.44734 * 18 17 8 34 34 H 1.08994 * 109.57758 * 297.85821 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2427 0.9702 6 1 0.5477 -2.3511 0.9256 7 6 2.1790 -3.0442 2.1559 8 7 1.8825 -4.4647 1.9638 9 6 1.0332 -5.1024 2.8282 10 1 0.9442 -4.7602 3.8487 11 6 0.2866 -6.1886 2.3928 12 7 0.0982 -6.3839 1.1049 13 14 -0.4505 -7.3733 3.6348 14 1 -1.3775 -6.6371 4.5313 15 1 -1.1969 -8.4394 2.9194 16 1 0.6363 -7.9849 4.4410 17 6 2.4845 -5.2110 0.8578 18 6 1.9714 -4.6533 -0.4743 19 16 2.3717 -2.8828 -0.5612 20 1 -0.3633 0.4512 0.9233 21 1 -0.3633 0.5740 -0.8524 22 1 -0.3634 -1.0252 -0.0709 23 1 3.0828 1.3432 -0.0709 24 1 1.5899 1.9163 -0.8524 25 1 1.7044 1.8723 0.9233 26 1 1.5611 -0.3873 2.0627 27 1 3.0797 -0.6612 1.1755 28 1 1.7105 -2.6966 3.0767 29 1 3.2579 -2.9040 2.2220 30 1 -0.4238 -7.1427 0.8007 31 1 3.5691 -5.1109 0.8997 32 1 2.2134 -6.2635 0.9395 33 1 2.4530 -5.1777 -1.2996 34 1 0.8913 -4.7871 -0.5344 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260275843.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:34 Heat of formation + Delta-G solvation = 29.223400 kcal Electronic energy + Delta-G solvation = -14889.087109 eV Core-core repulsion = 12562.967512 eV Total energy + Delta-G solvation = -2326.119598 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.115 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -37.59374 -36.16164 -32.33152 -30.82280 -29.01652 -27.40008 -25.91895 -23.74579 -22.27816 -20.59424 -20.17289 -17.03156 -15.73466 -15.42116 -14.90963 -14.61506 -14.41617 -13.63952 -13.51931 -13.14299 -12.72513 -12.37305 -12.21821 -11.70421 -11.54470 -11.43651 -11.28353 -11.06004 -10.89205 -10.76739 -10.49085 -10.14523 -9.91443 -9.65472 -8.83709 -8.39050 -8.09290 -7.00686 -6.48897 -5.89673 -3.34459 2.82308 3.33131 3.39553 3.41001 3.65410 4.17878 4.43035 5.13128 5.28301 5.31229 5.45479 5.52807 5.60907 5.75678 5.86455 5.87687 5.94105 6.02495 6.17408 6.25333 6.40398 6.50646 6.52809 6.67847 6.82664 7.23131 7.27214 7.36572 7.45402 7.72769 8.35813 9.11326 9.73255 10.25515 11.17206 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038390 B = 0.007943 C = 0.007389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.182185 B = 3524.187035 C = 3788.574597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 N -0.536 5.536 3 C 0.027 3.973 4 C 0.077 3.923 5 C -0.059 4.059 6 H 0.082 0.918 7 C 0.153 3.847 8 N -0.592 5.592 9 C -0.264 4.264 10 H 0.067 0.933 11 C 0.007 3.993 12 N -0.896 5.896 13 Si 0.904 3.096 14 H -0.283 1.283 15 H -0.290 1.290 16 H -0.283 1.283 17 C 0.171 3.829 18 C -0.085 4.085 19 S -0.283 6.283 20 H 0.020 0.980 21 H 0.063 0.937 22 H 0.074 0.926 23 H 0.066 0.934 24 H 0.064 0.936 25 H 0.019 0.981 26 H 0.040 0.960 27 H 0.078 0.922 28 H 0.059 0.941 29 H 0.036 0.964 30 H 0.256 0.744 31 H 0.014 0.986 32 H 0.094 0.906 33 H 0.074 0.926 34 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.606 9.582 -1.237 10.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.260 5.260 3 C -0.121 4.121 4 C -0.053 4.053 5 C -0.191 4.191 6 H 0.100 0.900 7 C 0.024 3.976 8 N -0.313 5.313 9 C -0.394 4.394 10 H 0.084 0.916 11 C -0.192 4.192 12 N -0.540 5.540 13 Si 0.734 3.266 14 H -0.209 1.209 15 H -0.216 1.216 16 H -0.209 1.209 17 C 0.043 3.957 18 C -0.235 4.235 19 S -0.057 6.057 20 H 0.038 0.962 21 H 0.082 0.918 22 H 0.093 0.907 23 H 0.084 0.916 24 H 0.083 0.917 25 H 0.038 0.962 26 H 0.058 0.942 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.032 0.968 32 H 0.112 0.888 33 H 0.093 0.907 34 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 3.224 9.754 -2.552 10.586 hybrid contribution -1.574 -0.867 2.091 2.757 sum 1.650 8.887 -0.462 9.051 Atomic orbital electron populations 1.22395 0.87495 1.02822 0.99573 1.61955 1.07916 1.12773 1.43329 1.22349 1.00691 0.89243 0.99858 1.21951 1.00256 0.92121 0.90940 1.23802 1.02668 0.95225 0.97391 0.89962 1.21094 0.97229 0.85101 0.94202 1.44022 1.52113 1.03273 1.31911 1.19191 1.17403 1.11445 0.91312 0.91568 1.25047 0.97358 1.01042 0.95796 1.69990 1.41408 1.29998 1.12598 0.86347 0.78757 0.80833 0.80677 1.20917 1.21574 1.20932 1.20765 0.91990 0.98306 0.84618 1.24046 1.06510 0.91031 1.01937 1.86235 1.76595 1.10473 1.32380 0.96193 0.91828 0.90713 0.91567 0.91715 0.96239 0.94222 0.90406 0.92215 0.94589 0.93410 0.96804 0.88783 0.90715 0.87863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.37 9.33 60.07 0.56 0.93 16 2 N -0.54 -8.19 4.59 -251.26 -1.15 -9.34 16 3 C 0.03 0.33 9.57 60.06 0.57 0.90 16 4 C 0.08 1.23 4.41 -3.82 -0.02 1.21 16 5 C -0.06 -1.16 2.61 -26.61 -0.07 -1.23 16 6 H 0.08 1.80 6.55 -51.93 -0.34 1.46 16 7 C 0.15 3.21 5.59 -3.99 -0.02 3.19 16 8 N -0.59 -14.64 2.81 -173.14 -0.49 -15.12 16 9 C -0.26 -7.05 9.46 -15.06 -0.14 -7.19 16 10 H 0.07 1.74 7.88 -52.48 -0.41 1.33 16 11 C 0.01 0.18 4.82 -17.43 -0.08 0.10 16 12 N -0.90 -24.65 10.02 55.49 0.56 -24.09 16 13 Si 0.90 21.14 29.59 -169.99 -5.03 16.11 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 C 0.17 4.08 5.37 -3.98 -0.02 4.05 16 18 C -0.09 -1.92 6.46 37.29 0.24 -1.68 16 19 S -0.28 -5.84 21.28 -107.50 -2.29 -8.12 16 20 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 21 H 0.06 0.81 8.12 -51.93 -0.42 0.39 16 22 H 0.07 1.23 6.47 -51.93 -0.34 0.89 16 23 H 0.07 0.77 8.12 -51.93 -0.42 0.34 16 24 H 0.06 0.71 8.12 -51.93 -0.42 0.28 16 25 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 26 H 0.04 0.60 8.12 -51.93 -0.42 0.18 16 27 H 0.08 1.22 8.06 -51.93 -0.42 0.80 16 28 H 0.06 1.21 7.87 -51.93 -0.41 0.81 16 29 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 30 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 31 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.09 2.46 5.93 -51.93 -0.31 2.15 16 33 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 34 H 0.10 2.63 7.03 -51.93 -0.36 2.26 16 LS Contribution 278.51 15.07 4.20 4.20 Total: -1.00 -27.79 278.51 -8.71 -36.50 By element: Atomic # 1 Polarization: 5.11 SS G_CDS: -5.52 Total: -0.41 kcal Atomic # 6 Polarization: -0.73 SS G_CDS: 1.02 Total: 0.29 kcal Atomic # 7 Polarization: -47.48 SS G_CDS: -1.08 Total: -48.56 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.03 Total: 16.11 kcal Atomic # 16 Polarization: -5.84 SS G_CDS: -2.29 Total: -8.12 kcal Total LS contribution 4.20 Total: 4.20 kcal Total: -27.79 -8.71 -36.50 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260275843.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.720 kcal (2) G-P(sol) polarization free energy of solvation -27.787 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds