Wall clock time and date at job start Mon Mar 30 2020 03:08:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46900 * 111.00155 * 2 1 4 4 C 1.46897 * 111.00253 * 123.95844 * 2 1 3 5 5 C 1.53003 * 109.47309 * 66.04095 * 4 2 1 6 6 H 1.09005 * 109.69621 * 300.34833 * 5 4 2 7 7 C 1.53234 * 109.58401 * 180.02562 * 5 4 2 8 8 N 1.46378 * 109.48791 * 182.55002 * 7 5 4 9 9 C 1.36933 * 119.65008 * 245.06566 * 8 7 5 10 10 H 1.08005 * 119.99898 * 331.61930 * 9 8 7 11 11 C 1.38809 * 120.00280 * 151.61871 * 9 8 7 12 12 N 1.31625 * 119.99868 * 341.15756 * 11 9 8 13 13 Si 1.86799 * 120.00009 * 161.15324 * 11 9 8 14 14 H 1.48495 * 109.47017 * 60.00356 * 13 11 9 15 15 H 1.48508 * 109.46948 * 179.97438 * 13 11 9 16 16 H 1.48497 * 109.47444 * 300.00195 * 13 11 9 17 17 C 1.46379 * 120.70616 * 65.09068 * 8 7 5 18 18 C 1.53249 * 109.48211 * 294.91437 * 17 8 7 19 19 S 1.81729 * 108.80365 * 57.65620 * 18 17 8 20 20 H 1.08997 * 109.46779 * 296.04291 * 1 2 3 21 21 H 1.08999 * 109.46701 * 56.04210 * 1 2 3 22 22 H 1.08999 * 109.47387 * 176.04211 * 1 2 3 23 23 H 1.09000 * 109.47228 * 183.95711 * 3 2 1 24 24 H 1.08999 * 109.47098 * 303.95433 * 3 2 1 25 25 H 1.08996 * 109.46947 * 63.95400 * 3 2 1 26 26 H 1.09002 * 109.46548 * 306.04618 * 4 2 1 27 27 H 1.08992 * 109.47572 * 186.04580 * 4 2 1 28 28 H 1.09002 * 109.46766 * 62.54467 * 7 5 4 29 29 H 1.08997 * 109.46959 * 302.55587 * 7 5 4 30 30 H 0.96996 * 119.99987 * 180.02562 * 12 11 9 31 31 H 1.08998 * 109.47268 * 54.91338 * 17 8 7 32 32 H 1.08998 * 109.47193 * 174.91183 * 17 8 7 33 33 H 1.09004 * 109.58154 * 177.44734 * 18 17 8 34 34 H 1.08994 * 109.57758 * 297.85821 * 18 17 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1375 5 6 1.6315 -2.2427 0.9702 6 1 0.5477 -2.3511 0.9256 7 6 2.1790 -3.0442 2.1559 8 7 1.8825 -4.4647 1.9638 9 6 1.0332 -5.1024 2.8282 10 1 0.9442 -4.7602 3.8487 11 6 0.2866 -6.1886 2.3928 12 7 0.0982 -6.3839 1.1049 13 14 -0.4505 -7.3733 3.6348 14 1 -1.3775 -6.6371 4.5313 15 1 -1.1969 -8.4394 2.9194 16 1 0.6363 -7.9849 4.4410 17 6 2.4845 -5.2110 0.8578 18 6 1.9714 -4.6533 -0.4743 19 16 2.3717 -2.8828 -0.5612 20 1 -0.3633 0.4512 0.9233 21 1 -0.3633 0.5740 -0.8524 22 1 -0.3634 -1.0252 -0.0709 23 1 3.0828 1.3432 -0.0709 24 1 1.5899 1.9163 -0.8524 25 1 1.7044 1.8723 0.9233 26 1 1.5611 -0.3873 2.0627 27 1 3.0797 -0.6612 1.1755 28 1 1.7105 -2.6966 3.0767 29 1 3.2579 -2.9040 2.2220 30 1 -0.4238 -7.1427 0.8007 31 1 3.5691 -5.1109 0.8997 32 1 2.2134 -6.2635 0.9395 33 1 2.4530 -5.1777 -1.2996 34 1 0.8913 -4.7871 -0.5344 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260275843.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:08:33 Heat of formation + Delta-G solvation = 12.536246 kcal Electronic energy + Delta-G solvation = -14889.810719 eV Core-core repulsion = 12562.967512 eV Total energy + Delta-G solvation = -2326.843207 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 230.115 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.95554 -37.85517 -34.10924 -32.60576 -30.82888 -28.46144 -27.47274 -25.58697 -23.80004 -22.05498 -21.89625 -18.94049 -17.37749 -16.99309 -16.29140 -16.13320 -15.77773 -15.39352 -15.33275 -14.67558 -14.37570 -14.04758 -13.33269 -13.31822 -13.10623 -12.86954 -12.72335 -12.61940 -12.57325 -12.39128 -12.13113 -11.99598 -11.81555 -11.38583 -10.72635 -10.23704 -9.24004 -8.90696 -8.23782 -7.91892 -5.39611 1.16792 1.46554 1.49238 1.55552 1.92783 2.48542 3.01854 3.24785 3.54026 3.98681 4.17805 4.31929 4.38804 4.48170 4.53323 4.58006 4.59252 4.70509 4.78438 4.80135 4.82451 4.87903 5.03255 5.05181 5.18334 5.39054 5.52549 5.67332 6.06387 6.18754 6.35106 7.10107 7.78076 8.26063 9.12497 Molecular weight = 230.11amu Principal moments of inertia in cm(-1) A = 0.038390 B = 0.007943 C = 0.007389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 729.182185 B = 3524.187035 C = 3788.574597 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.556 5.556 3 C 0.029 3.971 4 C 0.086 3.914 5 C -0.050 4.050 6 H 0.054 0.946 7 C 0.151 3.849 8 N -0.609 5.609 9 C -0.279 4.279 10 H 0.067 0.933 11 C -0.038 4.038 12 N -0.917 5.917 13 Si 0.966 3.034 14 H -0.278 1.278 15 H -0.294 1.294 16 H -0.280 1.280 17 C 0.175 3.825 18 C -0.081 4.081 19 S -0.265 6.265 20 H 0.030 0.970 21 H 0.080 0.920 22 H 0.045 0.955 23 H 0.071 0.929 24 H 0.077 0.923 25 H 0.031 0.969 26 H 0.054 0.946 27 H 0.087 0.913 28 H 0.065 0.935 29 H 0.050 0.950 30 H 0.251 0.749 31 H 0.025 0.975 32 H 0.067 0.933 33 H 0.088 0.912 34 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.138 11.062 -0.814 11.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.280 5.280 3 C -0.119 4.119 4 C -0.044 4.044 5 C -0.181 4.181 6 H 0.072 0.928 7 C 0.023 3.977 8 N -0.330 5.330 9 C -0.409 4.409 10 H 0.084 0.916 11 C -0.235 4.235 12 N -0.562 5.562 13 Si 0.794 3.206 14 H -0.204 1.204 15 H -0.220 1.220 16 H -0.206 1.206 17 C 0.048 3.952 18 C -0.231 4.231 19 S -0.039 6.039 20 H 0.049 0.951 21 H 0.098 0.902 22 H 0.064 0.936 23 H 0.090 0.910 24 H 0.096 0.904 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.105 0.895 28 H 0.083 0.917 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.043 0.957 32 H 0.085 0.915 33 H 0.107 0.893 34 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.769 11.265 -2.127 12.068 hybrid contribution -1.718 -1.258 1.950 2.887 sum 2.051 10.007 -0.176 10.217 Atomic orbital electron populations 1.22335 0.87277 1.01384 1.00890 1.61908 1.08329 1.14787 1.42970 1.22395 1.00995 0.87436 1.01078 1.21831 1.00887 0.89634 0.92028 1.23714 1.00716 0.97633 0.96085 0.92753 1.21196 0.98052 0.83447 0.94999 1.44208 1.52011 1.04936 1.31895 1.19449 1.17551 1.12066 0.91787 0.91578 1.25736 0.98112 1.02375 0.97317 1.70140 1.42021 1.30065 1.13946 0.85385 0.77942 0.78690 0.78602 1.20418 1.21994 1.20563 1.20648 0.92398 0.96946 0.85239 1.23805 1.04315 0.93166 1.01808 1.86122 1.76188 1.08308 1.33278 0.95142 0.90153 0.93579 0.90998 0.90444 0.94997 0.92818 0.89465 0.91706 0.93207 0.93949 0.95699 0.91517 0.89328 0.91232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.80 9.33 127.69 1.19 1.99 16 2 N -0.56 -15.66 4.59 -948.86 -4.36 -20.02 16 3 C 0.03 0.60 9.57 127.69 1.22 1.82 16 4 C 0.09 2.56 4.41 86.30 0.38 2.94 16 5 C -0.05 -1.90 2.61 30.67 0.08 -1.82 16 6 H 0.05 2.40 6.55 -2.39 -0.02 2.38 16 7 C 0.15 6.20 5.59 86.48 0.48 6.68 16 8 N -0.61 -30.11 2.81 -701.69 -1.97 -32.08 16 9 C -0.28 -14.94 9.46 84.03 0.79 -14.15 16 10 H 0.07 3.47 7.88 -2.91 -0.02 3.45 16 11 C -0.04 -2.07 4.82 84.86 0.41 -1.66 16 12 N -0.92 -51.52 10.02 21.65 0.22 -51.31 16 13 Si 0.97 43.76 29.59 68.60 2.03 45.79 16 14 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 15 H -0.29 -13.39 7.11 99.48 0.71 -12.69 16 16 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 17 C 0.18 8.42 5.37 86.49 0.46 8.89 16 18 C -0.08 -3.66 6.46 72.07 0.47 -3.19 16 19 S -0.26 -10.68 21.28 -56.49 -1.20 -11.89 16 20 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 21 H 0.08 1.87 8.12 -2.39 -0.02 1.85 16 22 H 0.05 1.50 6.47 -2.39 -0.02 1.49 16 23 H 0.07 1.42 8.12 -2.39 -0.02 1.41 16 24 H 0.08 1.43 8.12 -2.39 -0.02 1.41 16 25 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.05 1.47 8.12 -2.39 -0.02 1.45 16 27 H 0.09 2.46 8.06 -2.39 -0.02 2.44 16 28 H 0.06 2.56 7.87 -2.39 -0.02 2.55 16 29 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 30 H 0.25 13.82 8.31 -92.71 -0.77 13.04 16 31 H 0.03 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.07 3.57 5.93 -2.39 -0.01 3.56 16 33 H 0.09 3.67 8.14 -2.39 -0.02 3.65 16 34 H 0.07 3.63 7.03 -2.39 -0.02 3.62 16 Total: -1.00 -58.68 278.51 1.26 -57.41 By element: Atomic # 1 Polarization: 9.55 SS G_CDS: 1.05 Total: 10.60 kcal Atomic # 6 Polarization: -4.00 SS G_CDS: 5.49 Total: 1.49 kcal Atomic # 7 Polarization: -97.30 SS G_CDS: -6.11 Total: -103.41 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Atomic # 16 Polarization: -10.68 SS G_CDS: -1.20 Total: -11.89 kcal Total: -58.68 1.26 -57.41 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260275843.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.951 kcal (2) G-P(sol) polarization free energy of solvation -58.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.261 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.415 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.536 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds