Wall clock time and date at job start Mon Mar 30 2020 03:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 120.00129 * 2 1 4 4 H 1.48506 * 109.47183 * 240.00241 * 3 2 1 5 5 H 1.48501 * 109.46994 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46762 * 120.00058 * 3 2 1 7 7 C 1.39945 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99740 * 197.70645 * 7 2 1 9 9 C 1.41396 * 120.00086 * 17.71288 * 7 2 1 10 10 C 1.40733 * 120.24499 * 24.52826 * 9 7 2 11 11 C 1.37599 * 119.74056 * 180.27552 * 10 9 7 12 12 C 1.38657 * 120.25212 * 359.49921 * 11 10 9 13 13 C 1.38616 * 120.50082 * 0.22992 * 12 11 10 14 14 C 1.50689 * 119.87416 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47397 * 90.00071 * 14 13 12 16 16 C 1.54262 * 110.03367 * 292.16498 * 15 14 13 17 17 C 1.54883 * 104.19593 * 217.10396 * 16 15 14 18 18 C 1.54887 * 102.74988 * 37.94367 * 17 16 15 19 19 C 1.53878 * 110.03335 * 174.99771 * 15 14 13 20 20 C 1.37640 * 120.24452 * 0.02562 * 13 12 11 21 21 H 0.96996 * 120.00028 * 359.97438 * 1 2 3 22 22 H 1.07993 * 120.13026 * 0.03276 * 10 9 7 23 23 H 1.07999 * 119.87011 * 179.77375 * 11 10 9 24 24 H 1.08001 * 119.74857 * 180.25268 * 12 11 10 25 25 H 1.09009 * 109.47342 * 210.00213 * 14 13 12 26 26 H 1.09003 * 109.47397 * 329.99697 * 14 13 12 27 27 H 1.09006 * 110.01577 * 53.60924 * 15 14 13 28 28 H 1.09003 * 110.48740 * 335.78673 * 16 15 14 29 29 H 1.09002 * 110.48690 * 98.42188 * 16 15 14 30 30 H 1.09004 * 110.75633 * 279.62264 * 17 16 15 31 31 H 1.09003 * 110.90999 * 156.33143 * 17 16 15 32 32 H 1.09006 * 110.48307 * 203.37916 * 18 17 16 33 33 H 1.08997 * 110.60227 * 80.79035 * 18 17 16 34 34 H 1.09004 * 110.03172 * 238.57098 * 19 15 14 35 35 H 1.08997 * 110.02980 * 359.97438 * 19 15 14 36 36 H 1.08002 * 120.12215 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2126 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0496 -1.2343 0.2839 9 6 1.3512 -2.4073 -0.3736 10 6 0.2198 -2.3633 -1.2094 11 6 -0.4147 -3.5325 -1.5614 12 6 0.0628 -4.7514 -1.1043 13 6 1.1797 -4.8070 -0.2853 14 6 1.6869 -6.1394 0.2029 15 6 2.7061 -6.6938 -0.7946 16 6 2.0040 -7.0620 -2.1179 17 6 2.7294 -8.3473 -2.5878 18 6 2.9772 -9.1049 -1.2598 19 6 3.3248 -7.9927 -0.2489 20 6 1.8271 -3.6498 0.0838 21 1 -0.4850 0.8400 0.0004 22 1 -0.1513 -1.4154 -1.5700 23 1 -1.2853 -3.5009 -2.1997 24 1 -0.4391 -5.6643 -1.3890 25 1 2.1622 -6.0131 1.1757 26 1 0.8523 -6.8347 0.2939 27 1 3.4875 -5.9563 -0.9782 28 1 0.9464 -7.2620 -1.9459 29 1 2.1281 -6.2644 -2.8504 30 1 3.6733 -8.1021 -3.0747 31 1 2.0936 -8.9316 -3.2531 32 1 3.8116 -9.7982 -1.3661 33 1 2.0781 -9.6364 -0.9479 34 1 4.4067 -7.8859 -0.1686 35 1 2.8994 -8.2279 0.7266 36 1 2.6969 -3.6955 0.7224 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260391250.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:22 Heat of formation + Delta-G solvation = -18.415434 kcal Electronic energy + Delta-G solvation = -15522.766560 eV Core-core repulsion = 13162.677580 eV Total energy + Delta-G solvation = -2360.088981 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -38.55206 -37.04606 -33.82450 -31.78029 -29.76518 -28.55548 -28.03849 -25.19997 -24.22677 -20.86501 -20.28236 -20.04114 -19.10221 -16.94215 -15.57461 -15.19555 -14.81913 -14.57137 -13.79015 -13.58655 -13.11229 -12.88814 -12.53078 -12.05510 -11.73071 -11.46345 -11.18451 -10.96682 -10.94748 -10.77616 -10.68476 -10.61125 -10.51368 -10.33846 -10.11155 -9.99353 -9.41377 -9.29358 -9.06735 -7.39055 -7.15645 -6.70070 -4.30049 2.85260 3.06269 3.08995 3.11750 3.28260 3.96936 4.65900 4.84192 4.90285 5.00503 5.55938 5.65098 5.69551 5.77450 5.83747 5.90674 5.92966 6.01827 6.08183 6.20840 6.30591 6.34178 6.49614 6.52102 6.57077 6.58476 6.67039 6.85545 7.01048 7.12183 7.32241 7.47495 7.68264 7.99949 8.11633 8.19130 8.36383 8.70547 8.96007 9.05277 10.24848 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.044773 B = 0.005674 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.230864 B = 4933.404999 C = 5215.616116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.797 5.797 2 C 0.077 3.923 3 Si 0.906 3.094 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.266 1.266 7 C -0.467 4.467 8 H 0.075 0.925 9 C 0.110 3.890 10 C -0.167 4.167 11 C -0.108 4.108 12 C -0.232 4.232 13 C -0.061 4.061 14 C -0.064 4.064 15 C -0.083 4.083 16 C -0.112 4.112 17 C -0.127 4.127 18 C -0.123 4.123 19 C -0.122 4.122 20 C -0.219 4.219 21 H 0.279 0.721 22 H 0.115 0.885 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.057 0.943 26 H 0.056 0.944 27 H 0.070 0.930 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.062 0.938 31 H 0.059 0.941 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.058 0.942 35 H 0.062 0.938 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 -9.945 -2.167 10.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.422 5.422 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.189 1.189 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.497 4.497 8 H 0.093 0.907 9 C 0.107 3.893 10 C -0.186 4.186 11 C -0.126 4.126 12 C -0.251 4.251 13 C -0.061 4.061 14 C -0.102 4.102 15 C -0.102 4.102 16 C -0.150 4.150 17 C -0.165 4.165 18 C -0.161 4.161 19 C -0.160 4.160 20 C -0.239 4.239 21 H 0.090 0.910 22 H 0.133 0.867 23 H 0.103 0.897 24 H 0.102 0.898 25 H 0.076 0.924 26 H 0.075 0.925 27 H 0.089 0.911 28 H 0.085 0.915 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.078 0.922 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.080 0.920 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.362 -9.774 -2.140 10.555 hybrid contribution 0.267 0.884 0.073 0.926 sum 3.628 -8.891 -2.067 9.822 Atomic orbital electron populations 1.69828 1.07549 1.29115 1.35745 1.25882 0.94682 1.01171 0.92301 0.86408 0.80164 0.80435 0.79914 1.18891 1.20397 1.19078 1.19519 0.97987 0.91329 1.40822 0.90676 1.17585 0.91199 0.91951 0.88525 1.21306 0.99410 0.96726 1.01154 1.20667 0.98516 0.93466 0.99952 1.20196 1.01061 0.95797 1.08078 1.19239 0.95761 0.93203 0.97937 1.20593 0.97356 0.94882 0.97337 1.21721 0.97502 0.95914 0.95041 1.22387 0.99385 0.96401 0.96790 1.22529 1.00202 0.97012 0.96757 1.22339 1.00670 0.97415 0.95659 1.22259 1.00147 0.94928 0.98664 1.20822 1.03524 0.92393 1.07170 0.90966 0.86674 0.89714 0.89806 0.92428 0.92510 0.91127 0.91526 0.91668 0.91959 0.92183 0.92412 0.91995 0.92330 0.91963 0.89314 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -21.07 10.95 55.55 0.61 -20.46 16 2 C 0.08 1.97 5.14 -17.34 -0.09 1.88 16 3 Si 0.91 19.01 29.59 -169.99 -5.03 13.98 16 4 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 5 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 6 H -0.27 -5.50 7.11 56.52 0.40 -5.10 16 7 C -0.47 -12.66 9.05 -37.74 -0.34 -13.00 16 8 H 0.08 1.96 7.91 -52.49 -0.41 1.55 16 9 C 0.11 2.99 5.57 -106.82 -0.60 2.39 16 10 C -0.17 -4.44 8.70 -38.87 -0.34 -4.78 16 11 C -0.11 -2.59 10.02 -39.66 -0.40 -2.98 16 12 C -0.23 -5.21 8.91 -39.29 -0.35 -5.56 16 13 C -0.06 -1.36 4.90 -104.71 -0.51 -1.87 16 14 C -0.06 -1.14 4.48 -27.89 -0.13 -1.27 16 15 C -0.08 -1.30 2.92 -89.50 -0.26 -1.56 16 16 C -0.11 -1.68 5.42 -25.08 -0.14 -1.81 16 17 C -0.13 -1.56 6.91 -24.74 -0.17 -1.73 16 18 C -0.12 -1.41 6.83 -25.08 -0.17 -1.58 16 19 C -0.12 -1.57 6.46 -25.61 -0.17 -1.74 16 20 C -0.22 -5.46 9.44 -38.87 -0.37 -5.82 16 21 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 22 H 0.12 3.17 6.16 -52.49 -0.32 2.84 16 23 H 0.08 1.83 8.06 -52.49 -0.42 1.41 16 24 H 0.08 1.69 7.34 -52.49 -0.39 1.31 16 25 H 0.06 1.00 8.08 -51.92 -0.42 0.58 16 26 H 0.06 0.95 7.95 -51.93 -0.41 0.54 16 27 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 28 H 0.07 1.02 6.89 -51.93 -0.36 0.66 16 29 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 30 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 33 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 35 H 0.06 0.77 7.67 -51.93 -0.40 0.37 16 36 H 0.09 2.11 8.06 -52.49 -0.42 1.69 16 LS Contribution 290.02 15.07 4.37 4.37 Total: -1.00 -27.29 290.02 -9.72 -37.01 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -5.65 Total: 4.54 kcal Atomic # 6 Polarization: -35.42 SS G_CDS: -4.02 Total: -39.44 kcal Atomic # 7 Polarization: -21.07 SS G_CDS: 0.61 Total: -20.46 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -5.03 Total: 13.98 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -27.29 -9.72 -37.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260391250.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.598 kcal (2) G-P(sol) polarization free energy of solvation -27.289 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.415 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds