Wall clock time and date at job start Mon Mar 30 2020 03:24:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30829 * 1 3 3 Si 1.86802 * 120.00129 * 2 1 4 4 H 1.48506 * 109.47183 * 240.00241 * 3 2 1 5 5 H 1.48501 * 109.46994 * 0.02562 * 3 2 1 6 6 H 1.48500 * 109.46762 * 120.00058 * 3 2 1 7 7 C 1.39945 * 119.99736 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99740 * 197.70645 * 7 2 1 9 9 C 1.41396 * 120.00086 * 17.71288 * 7 2 1 10 10 C 1.40733 * 120.24499 * 24.52826 * 9 7 2 11 11 C 1.37599 * 119.74056 * 180.27552 * 10 9 7 12 12 C 1.38657 * 120.25212 * 359.49921 * 11 10 9 13 13 C 1.38616 * 120.50082 * 0.22992 * 12 11 10 14 14 C 1.50689 * 119.87416 * 180.02562 * 13 12 11 15 15 C 1.53002 * 109.47397 * 90.00071 * 14 13 12 16 16 C 1.54262 * 110.03367 * 292.16498 * 15 14 13 17 17 C 1.54883 * 104.19593 * 217.10396 * 16 15 14 18 18 C 1.54887 * 102.74988 * 37.94367 * 17 16 15 19 19 C 1.53878 * 110.03335 * 174.99771 * 15 14 13 20 20 C 1.37640 * 120.24452 * 0.02562 * 13 12 11 21 21 H 0.96996 * 120.00028 * 359.97438 * 1 2 3 22 22 H 1.07993 * 120.13026 * 0.03276 * 10 9 7 23 23 H 1.07999 * 119.87011 * 179.77375 * 11 10 9 24 24 H 1.08001 * 119.74857 * 180.25268 * 12 11 10 25 25 H 1.09009 * 109.47342 * 210.00213 * 14 13 12 26 26 H 1.09003 * 109.47397 * 329.99697 * 14 13 12 27 27 H 1.09006 * 110.01577 * 53.60924 * 15 14 13 28 28 H 1.09003 * 110.48740 * 335.78673 * 16 15 14 29 29 H 1.09002 * 110.48690 * 98.42188 * 16 15 14 30 30 H 1.09004 * 110.75633 * 279.62264 * 17 16 15 31 31 H 1.09003 * 110.90999 * 156.33143 * 17 16 15 32 32 H 1.09006 * 110.48307 * 203.37916 * 18 17 16 33 33 H 1.08997 * 110.60227 * 80.79035 * 18 17 16 34 34 H 1.09004 * 110.03172 * 238.57098 * 19 15 14 35 35 H 1.08997 * 110.02980 * 359.97438 * 19 15 14 36 36 H 1.08002 * 120.12215 * 179.97438 * 20 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2423 1.6177 0.0000 4 1 3.0961 1.6964 -1.2126 5 1 1.2773 2.7465 0.0006 6 1 3.0961 1.6963 1.2125 7 6 2.0080 -1.2120 -0.0005 8 1 3.0496 -1.2343 0.2839 9 6 1.3512 -2.4073 -0.3736 10 6 0.2198 -2.3633 -1.2094 11 6 -0.4147 -3.5325 -1.5614 12 6 0.0628 -4.7514 -1.1043 13 6 1.1797 -4.8070 -0.2853 14 6 1.6869 -6.1394 0.2029 15 6 2.7061 -6.6938 -0.7946 16 6 2.0040 -7.0620 -2.1179 17 6 2.7294 -8.3473 -2.5878 18 6 2.9772 -9.1049 -1.2598 19 6 3.3248 -7.9927 -0.2489 20 6 1.8271 -3.6498 0.0838 21 1 -0.4850 0.8400 0.0004 22 1 -0.1513 -1.4154 -1.5700 23 1 -1.2853 -3.5009 -2.1997 24 1 -0.4391 -5.6643 -1.3890 25 1 2.1622 -6.0131 1.1757 26 1 0.8523 -6.8347 0.2939 27 1 3.4875 -5.9563 -0.9782 28 1 0.9464 -7.2620 -1.9459 29 1 2.1281 -6.2644 -2.8504 30 1 3.6733 -8.1021 -3.0747 31 1 2.0936 -8.9316 -3.2531 32 1 3.8116 -9.7982 -1.3661 33 1 2.0781 -9.6364 -0.9479 34 1 4.4067 -7.8859 -0.1686 35 1 2.8994 -8.2279 0.7266 36 1 2.6969 -3.6955 0.7224 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260391250.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:24:22 Heat of formation + Delta-G solvation = -29.917220 kcal Electronic energy + Delta-G solvation = -15523.265315 eV Core-core repulsion = 13162.677580 eV Total energy + Delta-G solvation = -2360.587736 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.02241 -38.60397 -35.68720 -33.35268 -31.71512 -29.82575 -29.34307 -27.15724 -25.67561 -22.64337 -21.93110 -21.31476 -20.35436 -18.83648 -17.26740 -16.59344 -16.41050 -15.93558 -15.44841 -15.31110 -14.39140 -14.26458 -14.09155 -13.76840 -13.43940 -13.12022 -12.83830 -12.62992 -12.47689 -12.15415 -12.08898 -11.88908 -11.80095 -11.54674 -11.41822 -11.27675 -11.18201 -11.08242 -10.95065 -9.35772 -9.05799 -8.62639 -6.34104 1.01398 1.13303 1.36297 1.47934 1.54529 2.20357 2.74012 3.70116 3.78073 3.84182 3.98615 4.31917 4.40353 4.56513 4.61471 4.66991 4.71138 4.79549 4.84408 4.93577 5.01373 5.06933 5.10532 5.14716 5.17057 5.19953 5.33368 5.35998 5.46550 5.53817 5.58061 5.62700 5.76474 6.07010 6.14324 6.24930 6.42868 6.72733 6.95978 7.07578 8.34520 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.044773 B = 0.005674 C = 0.005367 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.230864 B = 4933.404999 C = 5215.616116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.035 3.965 3 Si 0.982 3.018 4 H -0.261 1.261 5 H -0.266 1.266 6 H -0.259 1.259 7 C -0.506 4.506 8 H 0.072 0.928 9 C 0.078 3.922 10 C -0.197 4.197 11 C -0.112 4.112 12 C -0.228 4.228 13 C -0.055 4.055 14 C -0.061 4.061 15 C -0.083 4.083 16 C -0.115 4.115 17 C -0.123 4.123 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.240 4.240 21 H 0.287 0.713 22 H 0.097 0.903 23 H 0.107 0.893 24 H 0.114 0.886 25 H 0.061 0.939 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.065 0.935 29 H 0.043 0.957 30 H 0.064 0.936 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.070 0.930 34 H 0.065 0.935 35 H 0.069 0.931 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 -11.583 -2.243 12.443 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.455 5.455 2 C -0.179 4.179 3 Si 0.802 3.198 4 H -0.186 1.186 5 H -0.190 1.190 6 H -0.183 1.183 7 C -0.536 4.536 8 H 0.090 0.910 9 C 0.076 3.924 10 C -0.216 4.216 11 C -0.130 4.130 12 C -0.247 4.247 13 C -0.055 4.055 14 C -0.098 4.098 15 C -0.101 4.101 16 C -0.153 4.153 17 C -0.160 4.160 18 C -0.155 4.155 19 C -0.156 4.156 20 C -0.259 4.259 21 H 0.098 0.902 22 H 0.115 0.885 23 H 0.125 0.875 24 H 0.132 0.868 25 H 0.079 0.921 26 H 0.092 0.908 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.062 0.938 30 H 0.083 0.917 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.084 0.916 35 H 0.088 0.912 36 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 3.745 -11.433 -2.216 12.233 hybrid contribution 0.098 1.288 0.087 1.295 sum 3.844 -10.145 -2.129 11.055 Atomic orbital electron populations 1.69886 1.09027 1.30474 1.36084 1.26756 0.95483 1.04485 0.91191 0.85269 0.78806 0.75680 0.80022 1.18573 1.19038 1.18345 1.19782 0.98185 0.92719 1.42896 0.91009 1.17969 0.92008 0.93137 0.89295 1.21260 1.00532 0.97053 1.02789 1.20979 0.98897 0.93299 0.99828 1.20560 1.00819 0.96292 1.07048 1.19695 0.94843 0.94498 0.96453 1.20642 0.98507 0.92683 0.97955 1.21682 0.96463 0.96931 0.95069 1.22377 0.99620 0.97320 0.95939 1.22510 1.00218 0.95678 0.97606 1.22336 1.01861 0.97041 0.94309 1.22227 1.00421 0.93638 0.99347 1.21003 1.04150 0.92859 1.07906 0.90235 0.88479 0.87501 0.86785 0.92063 0.90757 0.93291 0.91643 0.93827 0.91711 0.90708 0.90501 0.91138 0.91615 0.91198 0.89284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -45.09 10.95 21.83 0.24 -44.85 16 2 C 0.04 1.85 5.14 85.26 0.44 2.28 16 3 Si 0.98 39.55 29.59 68.60 2.03 41.59 16 4 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 5 H -0.27 -10.06 7.11 99.48 0.71 -9.36 16 6 H -0.26 -10.07 7.11 99.48 0.71 -9.37 16 7 C -0.51 -28.61 9.05 23.46 0.21 -28.39 16 8 H 0.07 3.92 7.91 -2.91 -0.02 3.90 16 9 C 0.08 4.42 5.57 -21.29 -0.12 4.30 16 10 C -0.20 -10.88 8.70 22.73 0.20 -10.68 16 11 C -0.11 -5.39 10.02 22.22 0.22 -5.17 16 12 C -0.23 -10.01 8.91 22.46 0.20 -9.81 16 13 C -0.05 -2.41 4.90 -19.92 -0.10 -2.51 16 14 C -0.06 -2.05 4.48 29.85 0.13 -1.92 16 15 C -0.08 -2.46 2.92 -10.07 -0.03 -2.49 16 16 C -0.11 -3.24 5.42 31.67 0.17 -3.07 16 17 C -0.12 -2.64 6.91 31.88 0.22 -2.42 16 18 C -0.12 -2.26 6.83 31.67 0.22 -2.05 16 19 C -0.12 -2.71 6.46 31.32 0.20 -2.51 16 20 C -0.24 -12.24 9.44 22.73 0.21 -12.02 16 21 H 0.29 14.12 8.30 -92.71 -0.77 13.35 16 22 H 0.10 5.61 6.16 -2.91 -0.02 5.59 16 23 H 0.11 4.56 8.06 -2.91 -0.02 4.53 16 24 H 0.11 4.29 7.34 -2.91 -0.02 4.27 16 25 H 0.06 2.03 8.08 -2.38 -0.02 2.01 16 26 H 0.07 2.28 7.95 -2.39 -0.02 2.26 16 27 H 0.05 1.65 8.14 -2.38 -0.02 1.64 16 28 H 0.06 1.84 6.89 -2.39 -0.02 1.83 16 29 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 32 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 33 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.07 1.41 8.14 -2.38 -0.02 1.39 16 35 H 0.07 1.50 7.67 -2.39 -0.02 1.48 16 36 H 0.09 4.39 8.06 -2.91 -0.02 4.37 16 Total: -1.00 -60.37 290.02 5.49 -54.88 By element: Atomic # 1 Polarization: 23.79 SS G_CDS: 1.03 Total: 24.83 kcal Atomic # 6 Polarization: -78.63 SS G_CDS: 2.18 Total: -76.44 kcal Atomic # 7 Polarization: -45.09 SS G_CDS: 0.24 Total: -44.85 kcal Atomic # 14 Polarization: 39.55 SS G_CDS: 2.03 Total: 41.59 kcal Total: -60.37 5.49 -54.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260391250.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.963 kcal (2) G-P(sol) polarization free energy of solvation -60.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.487 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds