Wall clock time and date at job start Mon Mar 30 2020 03:29:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37982 * 119.73349 * 2 1 4 4 C 1.38215 * 119.77224 * 180.26137 * 3 2 1 5 5 C 1.37976 * 119.77461 * 359.35513 * 4 3 2 6 6 C 1.38864 * 120.54331 * 0.23879 * 5 4 3 7 7 C 1.37712 * 119.68242 * 0.29945 * 6 5 4 8 8 C 1.50627 * 122.55533 * 179.24825 * 7 6 5 9 9 H 1.08998 * 109.25902 * 138.33743 * 8 7 6 10 10 C 1.53004 * 109.25339 * 257.81050 * 8 7 6 11 11 C 1.52732 * 110.57730 * 18.08945 * 8 7 6 12 12 H 1.09006 * 109.67425 * 68.53260 * 11 8 7 13 13 C 1.50693 * 109.68300 * 189.08288 * 11 8 7 14 14 H 1.08001 * 120.00157 * 359.97438 * 13 11 8 15 15 C 1.37883 * 120.00400 * 180.02562 * 13 11 8 16 16 N 1.31517 * 119.99389 * 359.97438 * 15 13 11 17 17 Si 1.86791 * 120.00059 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47435 * 89.99999 * 17 15 13 19 19 H 1.48504 * 109.46880 * 209.99863 * 17 15 13 20 20 H 1.48500 * 109.47556 * 329.99899 * 17 15 13 21 21 C 1.53321 * 108.39669 * 308.81018 * 11 8 7 22 22 C 1.50629 * 117.76614 * 180.65688 * 6 5 4 23 23 H 1.08999 * 109.47232 * 270.25851 * 1 2 3 24 24 H 1.09000 * 109.47361 * 30.25644 * 1 2 3 25 25 H 1.09002 * 109.47469 * 150.25360 * 1 2 3 26 26 H 1.07999 * 120.10927 * 0.02562 * 3 2 1 27 27 H 1.08002 * 120.11514 * 179.63774 * 4 3 2 28 28 H 1.08004 * 119.73125 * 180.26483 * 5 4 3 29 29 H 1.09005 * 109.47281 * 60.00187 * 10 8 7 30 30 H 1.08998 * 109.46866 * 179.97438 * 10 8 7 31 31 H 1.09000 * 109.47355 * 299.99789 * 10 8 7 32 32 H 0.96998 * 119.99560 * 180.02562 * 16 15 13 33 33 H 1.08994 * 109.67668 * 189.54402 * 21 11 8 34 34 H 1.09003 * 109.67473 * 310.04638 * 21 11 8 35 35 H 1.09000 * 109.25197 * 317.92219 * 22 6 5 36 36 H 1.09000 * 109.25275 * 77.34675 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1913 1.1982 0.0000 4 6 3.5735 1.1991 -0.0055 5 6 4.2595 0.0020 0.0026 6 6 3.5727 -1.2049 0.0112 7 6 2.1956 -1.2059 0.0054 8 6 1.3860 -2.4761 -0.0026 9 1 0.5417 -2.3686 0.6783 10 6 0.8636 -2.7325 -1.4176 11 6 2.2418 -3.6609 0.4407 12 1 2.4882 -3.5606 1.4978 13 6 1.4867 -4.9453 0.2146 14 1 0.4917 -4.9201 -0.2046 15 6 2.0656 -6.1526 0.5438 16 7 3.2771 -6.1833 1.0547 17 14 1.1292 -7.7445 0.2642 18 1 1.4219 -8.2583 -1.0980 19 1 1.5495 -8.7497 1.2732 20 1 -0.3282 -7.4911 0.3950 21 6 3.5296 -3.6658 -0.3914 22 6 4.3840 -2.4738 0.0350 23 1 -0.3633 0.0046 1.0276 24 1 -0.3634 0.8877 -0.5178 25 1 -0.3634 -0.8922 -0.5099 26 1 1.6488 2.1320 0.0004 27 1 4.1147 2.1337 -0.0114 28 1 5.3395 0.0036 0.0026 29 1 1.7052 -2.8315 -2.1033 30 1 0.2775 -3.6515 -1.4275 31 1 0.2364 -1.8977 -1.7303 32 1 3.6845 -7.0326 1.2859 33 1 4.0771 -4.5916 -0.2148 34 1 3.2830 -3.5815 -1.4498 35 1 5.2277 -2.3738 -0.6479 36 1 4.7579 -2.6425 1.0448 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000260420949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:02 Heat of formation + Delta-G solvation = -0.741689 kcal Electronic energy + Delta-G solvation = -16333.367848 eV Core-core repulsion = 13974.045259 eV Total energy + Delta-G solvation = -2359.322590 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.75004 -36.03185 -33.63266 -32.39378 -30.03003 -29.14841 -26.78487 -26.00660 -24.07493 -21.99184 -21.32846 -20.11387 -17.85128 -16.17825 -15.61781 -15.25277 -14.35442 -14.21296 -13.78033 -13.42016 -13.07771 -12.74142 -12.44998 -12.34880 -11.92878 -11.75660 -11.54440 -11.03850 -10.99222 -10.76280 -10.71655 -10.53730 -10.29685 -10.17063 -9.80926 -9.38456 -8.91295 -8.60049 -8.27936 -8.01221 -7.90223 -5.96097 -4.01308 1.84906 1.94370 3.31398 3.38633 3.41109 4.24261 4.45340 5.26311 5.30271 5.34066 5.41985 5.54030 5.69341 5.90244 5.94428 6.02531 6.06185 6.11350 6.20932 6.30993 6.41166 6.45882 6.50256 6.68373 6.82446 6.88427 6.94369 6.99509 7.06019 7.14893 7.23412 7.35673 7.56080 7.62590 7.78768 8.02996 8.14918 8.49242 9.01719 9.62603 11.10036 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.038058 B = 0.008170 C = 0.007056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.535477 B = 3426.452704 C = 3967.298780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.091 4.091 3 C -0.136 4.136 4 C -0.132 4.132 5 C -0.135 4.135 6 C -0.061 4.061 7 C -0.055 4.055 8 C -0.048 4.048 9 H 0.063 0.937 10 C -0.133 4.133 11 C 0.056 3.944 12 H 0.026 0.974 13 C -0.508 4.508 14 H 0.060 0.940 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.887 3.113 18 H -0.282 1.282 19 H -0.288 1.288 20 H -0.275 1.275 21 C -0.112 4.112 22 C -0.082 4.082 23 H 0.065 0.935 24 H 0.056 0.944 25 H 0.079 0.921 26 H 0.111 0.889 27 H 0.111 0.889 28 H 0.112 0.888 29 H 0.050 0.950 30 H 0.069 0.931 31 H 0.034 0.966 32 H 0.259 0.741 33 H 0.094 0.906 34 H 0.037 0.963 35 H 0.053 0.947 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.085 10.645 -2.573 11.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.091 4.091 3 C -0.154 4.154 4 C -0.150 4.150 5 C -0.153 4.153 6 C -0.061 4.061 7 C -0.055 4.055 8 C -0.066 4.066 9 H 0.082 0.918 10 C -0.189 4.189 11 C 0.038 3.962 12 H 0.045 0.955 13 C -0.546 4.546 14 H 0.078 0.922 15 C -0.140 4.140 16 N -0.529 5.529 17 Si 0.715 3.285 18 H -0.208 1.208 19 H -0.214 1.214 20 H -0.200 1.200 21 C -0.150 4.150 22 C -0.119 4.119 23 H 0.083 0.917 24 H 0.075 0.925 25 H 0.097 0.903 26 H 0.129 0.871 27 H 0.129 0.871 28 H 0.130 0.870 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.052 0.948 32 H 0.069 0.931 33 H 0.112 0.888 34 H 0.056 0.944 35 H 0.072 0.928 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -0.958 10.514 -2.504 10.851 hybrid contribution -0.271 -0.725 -0.071 0.778 sum -1.229 9.789 -2.574 10.196 Atomic orbital electron populations 1.20966 0.91978 1.02779 1.02036 1.19937 0.95776 0.92802 1.00633 1.20785 0.94232 0.96933 1.03486 1.20861 0.94303 0.97388 1.02450 1.21129 0.99289 0.92330 1.02598 1.19918 0.93396 0.95206 0.97551 1.19889 0.93074 0.94992 0.97516 1.20165 0.97279 0.92188 0.97018 0.91827 1.21877 1.00403 1.00471 0.96186 1.18649 0.91417 0.90865 0.95281 0.95539 1.21253 1.01319 0.90698 1.41354 0.92237 1.24966 0.94965 0.98919 0.95197 1.69894 1.14012 1.25623 1.43373 0.86672 0.80262 0.83689 0.77830 1.20800 1.21363 1.19990 1.21673 0.98331 0.96879 0.98118 1.20614 0.97248 0.92994 1.01078 0.91674 0.92486 0.90260 0.87095 0.87066 0.86990 0.93126 0.91243 0.94762 0.93126 0.88766 0.94448 0.92836 0.91375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.74 9.04 36.00 0.33 -1.42 16 2 C -0.09 -1.56 5.83 -104.48 -0.61 -2.17 16 3 C -0.14 -2.10 9.69 -39.68 -0.38 -2.48 16 4 C -0.13 -2.00 10.05 -39.69 -0.40 -2.40 16 5 C -0.14 -2.27 9.61 -39.45 -0.38 -2.64 16 6 C -0.06 -1.17 5.74 -104.62 -0.60 -1.77 16 7 C -0.05 -1.07 5.01 -104.62 -0.52 -1.59 16 8 C -0.05 -1.00 1.77 -91.94 -0.16 -1.17 16 9 H 0.06 1.32 7.16 -51.93 -0.37 0.95 16 10 C -0.13 -2.56 8.23 37.16 0.31 -2.26 16 11 C 0.06 1.38 1.90 -91.75 -0.17 1.20 16 12 H 0.03 0.72 8.10 -51.93 -0.42 0.30 16 13 C -0.51 -13.45 7.82 -34.44 -0.27 -13.72 16 14 H 0.06 1.54 6.07 -52.49 -0.32 1.22 16 15 C 0.06 1.64 5.28 -17.82 -0.09 1.54 16 16 N -0.89 -25.00 11.40 55.43 0.63 -24.37 16 17 Si 0.89 20.96 29.54 -169.99 -5.02 15.94 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 20 H -0.27 -6.41 7.11 56.52 0.40 -6.01 16 21 C -0.11 -2.62 5.10 -26.70 -0.14 -2.75 16 22 C -0.08 -1.66 5.67 -28.05 -0.16 -1.82 16 23 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 24 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 25 H 0.08 1.18 4.54 -51.93 -0.24 0.94 16 26 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 27 H 0.11 1.37 8.06 -52.49 -0.42 0.95 16 28 H 0.11 1.64 8.05 -52.48 -0.42 1.22 16 29 H 0.05 1.00 6.47 -51.93 -0.34 0.67 16 30 H 0.07 1.39 6.04 -51.93 -0.31 1.08 16 31 H 0.03 0.57 6.01 -51.93 -0.31 0.26 16 32 H 0.26 6.98 8.31 -40.82 -0.34 6.64 16 33 H 0.09 2.45 6.02 -51.93 -0.31 2.14 16 34 H 0.04 0.86 6.27 -51.93 -0.33 0.53 16 35 H 0.05 0.97 8.12 -51.93 -0.42 0.55 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 LS Contribution 274.63 15.07 4.14 4.14 Total: -1.00 -27.68 274.63 -8.55 -36.23 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -5.04 Total: 1.51 kcal Atomic # 6 Polarization: -30.18 SS G_CDS: -3.26 Total: -33.45 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.63 Total: -24.37 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -5.02 Total: 15.94 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.68 -8.55 -36.23 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260420949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.490 kcal (2) G-P(sol) polarization free energy of solvation -27.685 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.547 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds