Wall clock time and date at job start Mon Mar 30 2020 03:29:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.37982 * 119.73349 * 2 1 4 4 C 1.38215 * 119.77224 * 180.26137 * 3 2 1 5 5 C 1.37976 * 119.77461 * 359.35513 * 4 3 2 6 6 C 1.38864 * 120.54331 * 0.23879 * 5 4 3 7 7 C 1.37712 * 119.68242 * 0.29945 * 6 5 4 8 8 C 1.50627 * 122.55533 * 179.24825 * 7 6 5 9 9 H 1.08998 * 109.25902 * 138.33743 * 8 7 6 10 10 C 1.53004 * 109.25339 * 257.81050 * 8 7 6 11 11 C 1.52732 * 110.57730 * 18.08945 * 8 7 6 12 12 H 1.09006 * 109.67425 * 68.53260 * 11 8 7 13 13 C 1.50693 * 109.68300 * 189.08288 * 11 8 7 14 14 H 1.08001 * 120.00157 * 359.97438 * 13 11 8 15 15 C 1.37883 * 120.00400 * 180.02562 * 13 11 8 16 16 N 1.31517 * 119.99389 * 359.97438 * 15 13 11 17 17 Si 1.86791 * 120.00059 * 179.97438 * 15 13 11 18 18 H 1.48498 * 109.47435 * 89.99999 * 17 15 13 19 19 H 1.48504 * 109.46880 * 209.99863 * 17 15 13 20 20 H 1.48500 * 109.47556 * 329.99899 * 17 15 13 21 21 C 1.53321 * 108.39669 * 308.81018 * 11 8 7 22 22 C 1.50629 * 117.76614 * 180.65688 * 6 5 4 23 23 H 1.08999 * 109.47232 * 270.25851 * 1 2 3 24 24 H 1.09000 * 109.47361 * 30.25644 * 1 2 3 25 25 H 1.09002 * 109.47469 * 150.25360 * 1 2 3 26 26 H 1.07999 * 120.10927 * 0.02562 * 3 2 1 27 27 H 1.08002 * 120.11514 * 179.63774 * 4 3 2 28 28 H 1.08004 * 119.73125 * 180.26483 * 5 4 3 29 29 H 1.09005 * 109.47281 * 60.00187 * 10 8 7 30 30 H 1.08998 * 109.46866 * 179.97438 * 10 8 7 31 31 H 1.09000 * 109.47355 * 299.99789 * 10 8 7 32 32 H 0.96998 * 119.99560 * 180.02562 * 16 15 13 33 33 H 1.08994 * 109.67668 * 189.54402 * 21 11 8 34 34 H 1.09003 * 109.67473 * 310.04638 * 21 11 8 35 35 H 1.09000 * 109.25197 * 317.92219 * 22 6 5 36 36 H 1.09000 * 109.25275 * 77.34675 * 22 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1913 1.1982 0.0000 4 6 3.5735 1.1991 -0.0055 5 6 4.2595 0.0020 0.0026 6 6 3.5727 -1.2049 0.0112 7 6 2.1956 -1.2059 0.0054 8 6 1.3860 -2.4761 -0.0026 9 1 0.5417 -2.3686 0.6783 10 6 0.8636 -2.7325 -1.4176 11 6 2.2418 -3.6609 0.4407 12 1 2.4882 -3.5606 1.4978 13 6 1.4867 -4.9453 0.2146 14 1 0.4917 -4.9201 -0.2046 15 6 2.0656 -6.1526 0.5438 16 7 3.2771 -6.1833 1.0547 17 14 1.1292 -7.7445 0.2642 18 1 1.4219 -8.2583 -1.0980 19 1 1.5495 -8.7497 1.2732 20 1 -0.3282 -7.4911 0.3950 21 6 3.5296 -3.6658 -0.3914 22 6 4.3840 -2.4738 0.0350 23 1 -0.3633 0.0046 1.0276 24 1 -0.3634 0.8877 -0.5178 25 1 -0.3634 -0.8922 -0.5099 26 1 1.6488 2.1320 0.0004 27 1 4.1147 2.1337 -0.0114 28 1 5.3395 0.0036 0.0026 29 1 1.7052 -2.8315 -2.1033 30 1 0.2775 -3.6515 -1.4275 31 1 0.2364 -1.8977 -1.7303 32 1 3.6845 -7.0326 1.2859 33 1 4.0771 -4.5916 -0.2148 34 1 3.2830 -3.5815 -1.4498 35 1 5.2277 -2.3738 -0.6479 36 1 4.7579 -2.6425 1.0448 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000260420949.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:01 Heat of formation + Delta-G solvation = -13.514439 kcal Electronic energy + Delta-G solvation = -16333.921716 eV Core-core repulsion = 13974.045259 eV Total energy + Delta-G solvation = -2359.876458 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 230.137 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.17728 -37.64235 -35.02538 -34.33880 -31.49390 -30.75404 -28.18570 -27.67687 -25.79365 -23.61786 -22.90771 -21.46341 -19.52406 -18.16320 -17.06949 -16.79641 -16.06950 -15.74583 -15.19388 -14.76810 -14.68481 -14.42270 -13.99819 -13.85713 -13.31120 -13.19075 -13.05560 -12.89191 -12.55431 -12.40174 -12.25329 -12.14413 -11.98693 -11.73605 -11.60591 -11.23342 -10.68712 -10.50735 -10.30808 -9.30588 -9.27696 -8.04171 -6.16186 0.56953 0.63020 1.42239 1.43280 1.52627 2.45839 2.94362 3.23264 3.98724 3.99851 4.17962 4.24419 4.36227 4.43255 4.52643 4.60888 4.72056 4.78953 4.81224 4.88237 4.90281 4.98165 5.08468 5.17942 5.31180 5.32061 5.38810 5.49323 5.52112 5.55268 5.67364 5.74824 5.77283 6.00915 6.07829 6.19384 6.29144 6.46409 6.94906 7.50795 9.00991 Molecular weight = 230.14amu Principal moments of inertia in cm(-1) A = 0.038058 B = 0.008170 C = 0.007056 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 735.535477 B = 3426.452704 C = 3967.298780 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.099 4.099 3 C -0.132 4.132 4 C -0.124 4.124 5 C -0.141 4.141 6 C -0.088 4.088 7 C -0.083 4.083 8 C -0.040 4.040 9 H 0.058 0.942 10 C -0.124 4.124 11 C 0.055 3.945 12 H -0.016 1.016 13 C -0.521 4.521 14 H 0.062 0.938 15 C 0.010 3.990 16 N -0.919 5.919 17 Si 0.950 3.050 18 H -0.277 1.277 19 H -0.288 1.288 20 H -0.267 1.267 21 C -0.104 4.104 22 C -0.075 4.075 23 H 0.070 0.930 24 H 0.085 0.915 25 H 0.069 0.931 26 H 0.146 0.854 27 H 0.148 0.852 28 H 0.130 0.870 29 H 0.039 0.961 30 H 0.055 0.945 31 H 0.063 0.937 32 H 0.258 0.742 33 H 0.061 0.939 34 H 0.035 0.965 35 H 0.072 0.928 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.896 12.995 -3.374 13.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.099 4.099 3 C -0.150 4.150 4 C -0.142 4.142 5 C -0.158 4.158 6 C -0.088 4.088 7 C -0.083 4.083 8 C -0.059 4.059 9 H 0.076 0.924 10 C -0.180 4.180 11 C 0.037 3.963 12 H 0.002 0.998 13 C -0.559 4.559 14 H 0.080 0.920 15 C -0.188 4.188 16 N -0.559 5.559 17 Si 0.776 3.224 18 H -0.203 1.203 19 H -0.214 1.214 20 H -0.192 1.192 21 C -0.142 4.142 22 C -0.112 4.112 23 H 0.089 0.911 24 H 0.103 0.897 25 H 0.088 0.912 26 H 0.164 0.836 27 H 0.166 0.834 28 H 0.148 0.852 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.082 0.918 32 H 0.067 0.933 33 H 0.079 0.921 34 H 0.054 0.946 35 H 0.090 0.910 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -1.778 12.871 -3.309 13.408 hybrid contribution -0.006 -1.378 0.205 1.393 sum -1.784 11.493 -3.104 12.038 Atomic orbital electron populations 1.20998 0.90304 1.03690 1.02685 1.20209 0.97163 0.92419 1.00101 1.21217 0.94615 0.97546 1.01577 1.21303 0.94579 0.98096 1.00214 1.21340 1.00377 0.91933 1.02193 1.19912 0.93583 0.95495 0.99825 1.19855 0.93288 0.95205 1.00000 1.19963 0.96644 0.91742 0.97526 0.92358 1.21777 1.00146 1.01012 0.95092 1.18563 0.92644 0.92138 0.93002 0.99775 1.21627 1.01586 0.91811 1.40912 0.91962 1.25738 0.95784 1.02136 0.95177 1.70047 1.15369 1.26156 1.44346 0.85683 0.79281 0.79768 0.77691 1.20265 1.21354 1.19159 1.21454 0.98050 0.96951 0.97738 1.20455 0.97524 0.92715 1.00501 0.91144 0.89658 0.91204 0.83641 0.83422 0.85179 0.94160 0.92563 0.91823 0.93305 0.92069 0.94594 0.90998 0.92898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.04 71.24 0.64 -2.47 16 2 C -0.10 -3.11 5.83 -19.77 -0.12 -3.23 16 3 C -0.13 -3.49 9.69 22.20 0.22 -3.27 16 4 C -0.12 -3.25 10.05 22.20 0.22 -3.03 16 5 C -0.14 -4.37 9.61 22.36 0.21 -4.16 16 6 C -0.09 -3.37 5.74 -19.86 -0.11 -3.48 16 7 C -0.08 -3.21 5.01 -19.86 -0.10 -3.31 16 8 C -0.04 -1.71 1.77 -11.65 -0.02 -1.73 16 9 H 0.06 2.46 7.16 -2.39 -0.02 2.45 16 10 C -0.12 -4.76 8.23 71.98 0.59 -4.17 16 11 C 0.05 2.82 1.90 -11.52 -0.02 2.79 16 12 H -0.02 -0.93 8.10 -2.38 -0.02 -0.95 16 13 C -0.52 -28.53 7.82 25.60 0.20 -28.33 16 14 H 0.06 3.29 6.07 -2.91 -0.02 3.28 16 15 C 0.01 0.53 5.28 84.66 0.45 0.98 16 16 N -0.92 -53.79 11.40 21.45 0.24 -53.55 16 17 Si 0.95 43.84 29.54 68.60 2.03 45.86 16 18 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 19 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 20 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 21 C -0.10 -5.08 5.10 30.61 0.16 -4.92 16 22 C -0.07 -3.11 5.67 29.74 0.17 -2.94 16 23 H 0.07 1.74 8.14 -2.39 -0.02 1.73 16 24 H 0.08 1.71 8.08 -2.39 -0.02 1.69 16 25 H 0.07 1.92 4.54 -2.39 -0.01 1.91 16 26 H 0.15 2.85 8.06 -2.91 -0.02 2.83 16 27 H 0.15 2.80 8.06 -2.91 -0.02 2.77 16 28 H 0.13 3.47 8.05 -2.91 -0.02 3.45 16 29 H 0.04 1.60 6.47 -2.38 -0.02 1.59 16 30 H 0.06 2.27 6.04 -2.39 -0.01 2.26 16 31 H 0.06 2.05 6.01 -2.39 -0.01 2.03 16 32 H 0.26 14.42 8.31 -92.71 -0.77 13.65 16 33 H 0.06 3.37 6.02 -2.39 -0.01 3.36 16 34 H 0.04 1.71 6.27 -2.39 -0.01 1.70 16 35 H 0.07 2.63 8.12 -2.39 -0.02 2.61 16 36 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 Total: -1.00 -61.61 274.63 5.82 -55.78 By element: Atomic # 1 Polarization: 12.11 SS G_CDS: 1.06 Total: 13.17 kcal Atomic # 6 Polarization: -63.76 SS G_CDS: 2.49 Total: -61.27 kcal Atomic # 7 Polarization: -53.79 SS G_CDS: 0.24 Total: -53.55 kcal Atomic # 14 Polarization: 43.84 SS G_CDS: 2.03 Total: 45.86 kcal Total: -61.61 5.82 -55.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000260420949.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.268 kcal (2) G-P(sol) polarization free energy of solvation -61.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.339 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.824 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds